FvH4_3g11600

Belongs to the SNF7 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0015854
Physical Location & Seq
Reverse (-)
6843668 .. 6849538
5871 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g11600.t1

Sequence Viewer

Length: 684 bp
ATGAACTTGAACATCTTCAAGAAGAAGACCTCCCCCAAAGAGGCTCTGAGGTCCAGCAAAAGAGACATGGCTGTTGCTACCAGAGGCATTGAACGTGAGATTTCATCTCTTCAATTGGAGGAAAAGAAATTGGTGGCAGAGATCAAGAAAACAGCTAAAACTGGAAATGAGGCTGCCACAAAAATCTTGGCTCGCCAACTTGTTAGGTTACGCCAACAGATTACCAACTTGCAAGGAAGCCGTGCCCAAATAAGAGGCGTAGCTACTCATACTCAGGCATTATATGCAAGCACTTCAATTTCCACAGGCATGAAAGGCGCAACAAAAGCAATGGTGGCAATGAATAAGGAAATGCAACCTGCAAAACAAATTAAAGTGATCAGAGAGTTCCAGAAGCAGTCTGCACAAATGGACATGACGATTGAAATGATGTCAGAGTCCATTGATGAGACCTTAGACAAAGATGAGGCTGAAGAGGAAACAGAGGAACTCACTAACCAGGTTCTCGATGAGATTGGTGTTGATATCGCATCCCAGTTATCTTCAGCTCCAAAAGGCAAGATTGGATCAAGAAATGGTGAAAATGTTGCACCAAGGAATGCTGCAAATGTTGTTCCCAAGAGTTCTGAATCTCCTGATGTTGAGGATCTTGAGAAGAGATTGGCCTCTCTGCGACGCATATGA

Protein Analysis

228

Amino Acids

25.07

Weight (kDa)

9.32

Isoelectric Point (pI)

56.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Snf7 PF03357 20 - 187 5.5e-38 Snf7
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015854)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G44560 AT5G44560
fragaria_vesca FvH4_3g11600
malus_domestica MD05G1262400.v1.1 MD10G1240400.v1.1
prunus_persica Prupe.4G103400_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0018561
rosa_laevigata RLG00000032379
rosa_multiflora Rmu_sc0002579.1_g000007 Rmu_sc0007192.1_g000012
rosa_roxburghii Rroxscaffold_1G00059190
rosa_rugosa Rorug05G0045200
rosa_samantha Rh5AG136200 Rh5BG135200
rosa_wichuraiana Rw5G012070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 367
AclWI GGATC 2 cut(s) 574, 654
AcuI CTGAAG 2 cut(s) 492, 528
AfiI CCNNNNNNNGG 1 cut(s) 40
AgsI TTSAA 6 cut(s) 10, 19, 92, 113, 297, 425
AjnI CCWGG 1 cut(s) 498
AluBI AGCT 3 cut(s) 155, 263, 548
AluI AGCT 3 cut(s) 155, 263, 548
Alw26I GTCTC 2 cut(s) 57, 443
AlwI GGATC 2 cut(s) 574, 654
AoxI GGCC 1 cut(s) 663
ApeKI GCWGC 2 cut(s) 173, 602
Asp700I GAANNNNTTC 1 cut(s) 14
AspLEI GCGC 1 cut(s) 320
AspS9I GGNCC 1 cut(s) 51
AsuHPI GGTGA 1 cut(s) 590
AvaII GGWCC 1 cut(s) 51
BaeGI GKGCMC 1 cut(s) 247
BbsI GAAGAC 1 cut(s) 32
BbvI GCAGC 2 cut(s) 160, 589
BceAI ACGGC 1 cut(s) 225
BciT130I CCWGG 1 cut(s) 500
BclI TGATCA 1 cut(s) 378
BcoDI GTCTC 2 cut(s) 57, 443
BfuAI ACCTGC 1 cut(s) 367
BisI GCNGC 2 cut(s) 174, 603
BlsI GCNGC 2 cut(s) 175, 604
Bme1390I CCNGG 1 cut(s) 500
Bme18I GGWCC 1 cut(s) 51
BmgT120I GGNCC 1 cut(s) 51
BmrFI CCNGG 1 cut(s) 500
BmrI ACTGGG 1 cut(s) 529
BmsI GCATC 1 cut(s) 539
BmuI ACTGGG 1 cut(s) 529
BpiI GAAGAC 1 cut(s) 32
BpuEI CTTGAG 1 cut(s) 671
BsaI GGTCTC 1 cut(s) 443
BsaJI CCNNGG 1 cut(s) 593
Bsc4I CCNNNNNNNGG 1 cut(s) 40
Bse1I ACTGG 2 cut(s) 166, 535
Bse3DI GCAATG 2 cut(s) 336, 345
BseBI CCWGG 1 cut(s) 500
BseDI CCNNGG 1 cut(s) 593
BseGI GGATG 1 cut(s) 530
BseLI CCNNNNNNNGG 1 cut(s) 40
BseMI GCAATG 2 cut(s) 336, 345
BseMII CTCAG 2 cut(s) 38, 287
BseNI ACTGG 2 cut(s) 166, 535
BseSI GKGCMC 1 cut(s) 247
BseXI GCAGC 2 cut(s) 160, 589
BsgI GTGCAG 1 cut(s) 387
BshFI GGCC 1 cut(s) 665
BslI CCNNNNNNNGG 1 cut(s) 40
BsmAI GTCTC 2 cut(s) 57, 443
BsmI GAATGC 1 cut(s) 604
BsnI GGCC 1 cut(s) 665
Bso31I GGTCTC 1 cut(s) 443
Bsp1286I GDGCHC 1 cut(s) 247
Bsp143I GATC 4 cut(s) 141, 378, 566, 646
BspANI GGCC 1 cut(s) 665
BspCNI CTCAG 2 cut(s) 39, 286
BspMI ACCTGC 1 cut(s) 367
BspPI GGATC 2 cut(s) 574, 654
BspTNI GGTCTC 1 cut(s) 443
BsrDI GCAATG 2 cut(s) 336, 345
BsrI ACTGG 2 cut(s) 166, 535
BssECI CCNNGG 1 cut(s) 593
BssMI GATC 4 cut(s) 141, 378, 566, 646
BssT1I CCWWGG 1 cut(s) 593
Bst2UI CCWGG 1 cut(s) 500
Bst6I CTCTTC 3 cut(s) 114, 468, 650
BstAPI GCANNNNNTGC 1 cut(s) 284
BstC8I GCNNGC 2 cut(s) 193, 289
BstDEI CTNAG 3 cut(s) 47, 273, 454
BstF5I GGATG 1 cut(s) 530
BstHHI GCGC 1 cut(s) 320
BstKTI GATC 4 cut(s) 144, 381, 569, 649
BstMAI GTCTC 2 cut(s) 57, 443
BstMBI GATC 4 cut(s) 141, 378, 566, 646
BstMWI GCNNNNNNNGC 4 cut(s) 284, 315, 326, 335
BstNI CCWGG 1 cut(s) 500
BstSCI CCNGG 1 cut(s) 498
BstSLI GKGCMC 1 cut(s) 247
BstV1I GCAGC 2 cut(s) 160, 589
BstV2I GAAGAC 1 cut(s) 32
BstX2I RGATCY 1 cut(s) 646
BstYI RGATCY 1 cut(s) 646
BsuRI GGCC 1 cut(s) 665
BtsCI GGATG 1 cut(s) 530
BveI ACCTGC 1 cut(s) 367
Cac8I GCNNGC 2 cut(s) 193, 289
CfoI GCGC 1 cut(s) 320
Cfr13I GGNCC 1 cut(s) 51
CsiI ACCWGGT 1 cut(s) 498
CviAII CATG 3 cut(s) 67, 310, 415
DdeI CTNAG 3 cut(s) 47, 273, 454
DpnI GATC 4 cut(s) 143, 380, 568, 648
DpnII GATC 4 cut(s) 141, 378, 566, 646
Eam1104I CTCTTC 3 cut(s) 114, 468, 650
EarI CTCTTC 3 cut(s) 114, 468, 650
Eco130I CCWWGG 1 cut(s) 593
Eco31I GGTCTC 1 cut(s) 443
Eco32I GATATC 1 cut(s) 526
Eco47I GGWCC 1 cut(s) 51
Eco57I CTGAAG 2 cut(s) 492, 528
EcoRII CCWGG 1 cut(s) 498
EcoRV GATATC 1 cut(s) 526
EcoT14I CCWWGG 1 cut(s) 593
ErhI CCWWGG 1 cut(s) 593
FaeI CATG 3 cut(s) 70, 313, 418
FaiI YATR 8 cut(s) 68, 270, 283, 285, 311, 416, 680, 682
FatI CATG 3 cut(s) 66, 309, 414
FauNDI CATATG 1 cut(s) 680
FbaI TGATCA 1 cut(s) 378
Fnu4HI GCNGC 2 cut(s) 174, 603
FokI GGATG 1 cut(s) 517
Fsp4HI GCNGC 2 cut(s) 174, 603
GlaI GCGC 1 cut(s) 319
GluI GCNGC 2 cut(s) 174, 603
HaeIII GGCC 1 cut(s) 665
HhaI GCGC 1 cut(s) 320
Hin1II CATG 3 cut(s) 70, 313, 418
Hin6I GCGC 1 cut(s) 318
HinP1I GCGC 1 cut(s) 318
HinfI GANTC 2 cut(s) 437, 629
HphI GGTGA 1 cut(s) 590
Hpy188I TCNGA 4 cut(s) 48, 383, 436, 628
Hpy188III TCNNGA 7 cut(s) 19, 145, 391, 506, 570, 635, 650
Hpy99I CGWCG 1 cut(s) 678
HpyCH4IV ACGT 1 cut(s) 94
HpyCH4V TGCA 7 cut(s) 232, 287, 355, 362, 404, 590, 605
HpyF10VI GCNNNNNNNGC 4 cut(s) 284, 315, 326, 335
HpyF3I CTNAG 3 cut(s) 47, 273, 454
HpySE526I ACGT 1 cut(s) 94
Hsp92II CATG 3 cut(s) 70, 313, 418
HspAI GCGC 1 cut(s) 318
Ksp22I TGATCA 1 cut(s) 378
Kzo9I GATC 4 cut(s) 141, 378, 566, 646
LmnI GCTCC 1 cut(s) 553
Lsp1109I GCAGC 2 cut(s) 160, 589
LweI GCATC 1 cut(s) 539
MabI ACCWGGT 1 cut(s) 498
MaeII ACGT 1 cut(s) 94
MaeIII GTNAC 1 cut(s) 207
MalI GATC 4 cut(s) 143, 380, 568, 648
MboI GATC 4 cut(s) 141, 378, 566, 646
MboII GAAGA 7 cut(s) 7, 34, 37, 101, 485, 534, 667
MfeI CAATTG 1 cut(s) 113
MflI RGATCY 1 cut(s) 646
MhlI GDGCHC 1 cut(s) 247
MluCI AATT 4 cut(s) 113, 128, 297, 369
MlyI GAGTC 1 cut(s) 446
MroXI GAANNNNTTC 1 cut(s) 14
MseI TTAA 1 cut(s) 372
MslI CAYNNNNRTG 1 cut(s) 308
MspR9I CCNGG 1 cut(s) 500
MunI CAATTG 1 cut(s) 113
Mva1269I GAATGC 1 cut(s) 604
MvaI CCWGG 1 cut(s) 500
MwoI GCNNNNNNNGC 4 cut(s) 284, 315, 326, 335
NdeI CATATG 1 cut(s) 680
NdeII GATC 4 cut(s) 141, 378, 566, 646
NlaIII CATG 3 cut(s) 70, 313, 418
PctI GAATGC 1 cut(s) 604
PdmI GAANNNNTTC 1 cut(s) 14
PfeI GAWTC 1 cut(s) 629
PkrI GCNGC 2 cut(s) 175, 604
PleI GAGTC 1 cut(s) 445
PpsI GAGTC 1 cut(s) 445
Psp6I CCWGG 1 cut(s) 498
PspGI CCWGG 1 cut(s) 498
PspPI GGNCC 1 cut(s) 51
PsuI RGATCY 1 cut(s) 646
RseI CAYNNNNRTG 1 cut(s) 308
SaqAI TTAA 1 cut(s) 372
SatI GCNGC 2 cut(s) 174, 603
Sau3AI GATC 4 cut(s) 141, 378, 566, 646
Sau96I GGNCC 1 cut(s) 51
SchI GAGTC 1 cut(s) 446
ScrFI CCNGG 1 cut(s) 500
SduI GDGCHC 1 cut(s) 247
SexAI ACCWGGT 1 cut(s) 498
SfaNI GCATC 1 cut(s) 539
SinI GGWCC 1 cut(s) 51
SmiMI CAYNNNNRTG 1 cut(s) 308
SmlI CTYRAG 1 cut(s) 650
SmoI CTYRAG 1 cut(s) 650
Sse9I AATT 4 cut(s) 113, 128, 297, 369
StyD4I CCNGG 1 cut(s) 498
StyI CCWWGG 1 cut(s) 593
TaiI ACGT 1 cut(s) 97
TaqI TCGA 1 cut(s) 507
TasI AATT 4 cut(s) 113, 128, 297, 369
TfiI GAWTC 1 cut(s) 629
Tru1I TTAA 1 cut(s) 372
Tru9I TTAA 1 cut(s) 372
TseI GCWGC 2 cut(s) 173, 602
TspDTI ATGAA 4 cut(s) 17, 93, 326, 356
VpaK11BI GGWCC 1 cut(s) 51
XcmI CCANNNNNNNNNTGG 1 cut(s) 184
XmnI GAANNNNTTC 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.