Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007192.1

Orthogroup ID

OG0015854

Physical Location & Seq

Genomic Coordinates Forward (+)

53024 .. 56833

Gene Structure 3810 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007192.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

atgaacctgaacatcttcaagaagaagacctcccctaaagaggctctgagatccagcaaaagagacatggctgttgctaccagaggcattgaacgtgagatttcgtctcttcagttggaggaaaagaaattggtggcagagatcaagaaaacagctaaaactggaaatgaggctgccacaaaaatcctggctcgccaacttgttaggctacgtcaacagattaccaacttgcaaggaagccgtgcccaaataagaggcgtagctactcatacgcaggcattatatgcaagcacttcaatttccacaggcatgaaaggtgcaactaaagcaatggtggcaatgaacaaggaaatgcaacctgcaaaacaaattaaagtgatcagagaattccagaagcagtcagcacaaatggacatgacgattgaaatgatgtcagagtccattgatgagaccttagacaaagatgaggctgaagaggaaacagaggagctcactaaccaggttctcgatgagattggtgttgatattgcatcccagttatcttcagctccaaaaggcaagattggatcaagaaatggtgaaaatgttgcaccaaggaatgctgcaaatgttgttcccgggagttctgaatctcctgatgttgaggatcttgagaagagattggcctctctgcgacgcatatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000815 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0010008 GO:0012505 GO:0016020 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0036452 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04144 ko04217 map04144 map04217

Pfam Domains

Protein Families

Snf7

Protein Analysis

227

Amino Acids

25.0

Weight (kDa)

9.2

Isoelectric Point (pI)

56.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015854)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44560 AT5G44560
fragaria_vesca	FvH4_3g11600
malus_domestica	MD05G1262400.v1.1 MD10G1240400.v1.1
prunus_persica	Prupe.4G103400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0018561
rosa_laevigata	RLG00000032379
rosa_multiflora	Rmu_sc0002579.1_g000007 Rmu_sc0007192.1_g000012
rosa_roxburghii	Rroxscaffold_1G00059190
rosa_rugosa	Rorug05G0045200
rosa_samantha	Rh5AG136200 Rh5BG135200
rosa_wichuraiana	Rw5G012070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	367
AclWI	GGATC	3 cut(s)	45, 574, 654
AcsI	RAATTY	1 cut(s)	386
AcuI	CTGAAG	3 cut(s)	95, 492, 528
AfiI	CCNNNNNNNGG	1 cut(s)	40
AgsI	TTSAA	4 cut(s)	19, 92, 297, 425
AjnI	CCWGG	2 cut(s)	186, 498
AluBI	AGCT	4 cut(s)	155, 263, 490, 548
AluI	AGCT	4 cut(s)	155, 263, 490, 548
Alw21I	GWGCWC	1 cut(s)	492
Alw26I	GTCTC	3 cut(s)	57, 111, 443
AlwI	GGATC	3 cut(s)	45, 574, 654
Ama87I	CYCGRG	1 cut(s)	617
AoxI	GGCC	1 cut(s)	663
ApeKI	GCWGC	2 cut(s)	173, 602
ApoI	RAATTY	1 cut(s)	386
Asp700I	GAANNNNTTC	1 cut(s)	14
AsuC2I	CCSGG	2 cut(s)	618, 619
AsuHPI	GGTGA	1 cut(s)	590
AvaI	CYCGRG	1 cut(s)	617
BaeGI	GKGCMC	1 cut(s)	247
BanII	GRGCYC	1 cut(s)	492
BbsI	GAAGAC	1 cut(s)	32
Bbv12I	GWGCWC	1 cut(s)	492
BbvI	GCAGC	2 cut(s)	160, 589
BceAI	ACGGC	1 cut(s)	225
BciT130I	CCWGG	2 cut(s)	188, 500
BclI	TGATCA	1 cut(s)	378
BcnI	CCSGG	2 cut(s)	618, 619
BcoDI	GTCTC	3 cut(s)	57, 111, 443
BfuAI	ACCTGC	1 cut(s)	367
BisI	GCNGC	2 cut(s)	174, 603
BlsI	GCNGC	2 cut(s)	175, 604
Bme1390I	CCNGG	4 cut(s)	188, 500, 618, 619
BmeT110I	CYCGRG	1 cut(s)	617
BmrFI	CCNGG	4 cut(s)	188, 500, 618, 619
BmrI	ACTGGG	1 cut(s)	529
BmsI	GCATC	1 cut(s)	539
BmuI	ACTGGG	1 cut(s)	529
BpiI	GAAGAC	1 cut(s)	32
BpuEI	CTTGAG	1 cut(s)	671
BpuMI	CCSGG	2 cut(s)	618, 619
BsaI	GGTCTC	1 cut(s)	443
BsaJI	CCNNGG	2 cut(s)	593, 617
Bsc4I	CCNNNNNNNGG	1 cut(s)	40
Bse1I	ACTGG	2 cut(s)	166, 535
Bse3DI	GCAATG	2 cut(s)	336, 345
BseBI	CCWGG	2 cut(s)	188, 500
BseDI	CCNNGG	2 cut(s)	593, 617
BseGI	GGATG	1 cut(s)	530
BseLI	CCNNNNNNNGG	1 cut(s)	40
BseMI	GCAATG	2 cut(s)	336, 345
BseMII	CTCAG	1 cut(s)	38
BseNI	ACTGG	2 cut(s)	166, 535
BseRI	GAGGAG	1 cut(s)	500
BseSI	GKGCMC	1 cut(s)	247
BseXI	GCAGC	2 cut(s)	160, 589
BshFI	GGCC	1 cut(s)	665
BsiHKAI	GWGCWC	1 cut(s)	492
BsiHKCI	CYCGRG	1 cut(s)	617
BsiSI	CCGG	1 cut(s)	618
BslI	CCNNNNNNNGG	1 cut(s)	40
BsmAI	GTCTC	3 cut(s)	57, 111, 443
BsmBI	CGTCTC	1 cut(s)	111
BsmI	GAATGC	1 cut(s)	604
BsnI	GGCC	1 cut(s)	665
Bso31I	GGTCTC	1 cut(s)	443
BsoBI	CYCGRG	1 cut(s)	617
Bsp1286I	GDGCHC	2 cut(s)	247, 492
Bsp143I	GATC	5 cut(s)	50, 141, 378, 566, 646
BspANI	GGCC	1 cut(s)	665
BspCNI	CTCAG	1 cut(s)	39
BspMI	ACCTGC	1 cut(s)	367
BspPI	GGATC	3 cut(s)	45, 574, 654
BspTNI	GGTCTC	1 cut(s)	443
BsrDI	GCAATG	2 cut(s)	336, 345
BsrI	ACTGG	2 cut(s)	166, 535
BssECI	CCNNGG	2 cut(s)	593, 617
BssMI	GATC	5 cut(s)	50, 141, 378, 566, 646
BssT1I	CCWWGG	1 cut(s)	593
Bst2UI	CCWGG	2 cut(s)	188, 500
Bst6I	CTCTTC	3 cut(s)	114, 468, 650
BstAPI	GCANNNNNTGC	1 cut(s)	284
BstC8I	GCNNGC	3 cut(s)	193, 276, 289
BstDEI	CTNAG	2 cut(s)	47, 454
BstF5I	GGATG	1 cut(s)	530
BstKTI	GATC	5 cut(s)	53, 144, 381, 569, 649
BstMAI	GTCTC	3 cut(s)	57, 111, 443
BstMBI	GATC	5 cut(s)	50, 141, 378, 566, 646
BstMWI	GCNNNNNNNGC	3 cut(s)	284, 326, 335
BstNI	CCWGG	2 cut(s)	188, 500
BstSCI	CCNGG	4 cut(s)	186, 498, 616, 617
BstSLI	GKGCMC	1 cut(s)	247
BstV1I	GCAGC	2 cut(s)	160, 589
BstV2I	GAAGAC	1 cut(s)	32
BstX2I	RGATCY	2 cut(s)	50, 646
BstYI	RGATCY	2 cut(s)	50, 646
BsuRI	GGCC	1 cut(s)	665
BtsCI	GGATG	1 cut(s)	530
BveI	ACCTGC	1 cut(s)	367
Cac8I	GCNNGC	3 cut(s)	193, 276, 289
Cfr9I	CCCGGG	1 cut(s)	617
CsiI	ACCWGGT	1 cut(s)	498
CviAII	CATG	3 cut(s)	67, 310, 415
DdeI	CTNAG	2 cut(s)	47, 454
DpnI	GATC	5 cut(s)	52, 143, 380, 568, 648
DpnII	GATC	5 cut(s)	50, 141, 378, 566, 646
Eam1104I	CTCTTC	3 cut(s)	114, 468, 650
EarI	CTCTTC	3 cut(s)	114, 468, 650
Ecl136II	GAGCTC	1 cut(s)	490
Eco130I	CCWWGG	1 cut(s)	593
Eco24I	GRGCYC	1 cut(s)	492
Eco31I	GGTCTC	1 cut(s)	443
Eco53kI	GAGCTC	1 cut(s)	490
Eco57I	CTGAAG	3 cut(s)	95, 492, 528
Eco88I	CYCGRG	1 cut(s)	617
EcoICRI	GAGCTC	1 cut(s)	490
EcoRI	GAATTC	1 cut(s)	386
EcoRII	CCWGG	2 cut(s)	186, 498
EcoT14I	CCWWGG	1 cut(s)	593
EcoT38I	GRGCYC	1 cut(s)	492
ErhI	CCWWGG	1 cut(s)	593
Esp3I	CGTCTC	1 cut(s)	111
FaeI	CATG	3 cut(s)	70, 313, 418
FaiI	YATR	8 cut(s)	68, 270, 283, 285, 311, 416, 680, 682
FatI	CATG	3 cut(s)	66, 309, 414
FauNDI	CATATG	1 cut(s)	680
FbaI	TGATCA	1 cut(s)	378
Fnu4HI	GCNGC	2 cut(s)	174, 603
FokI	GGATG	1 cut(s)	517
FriOI	GRGCYC	1 cut(s)	492
Fsp4HI	GCNGC	2 cut(s)	174, 603
GluI	GCNGC	2 cut(s)	174, 603
HaeIII	GGCC	1 cut(s)	665
HapII	CCGG	1 cut(s)	618
Hin1II	CATG	3 cut(s)	70, 313, 418
HincII	GTYRAC	1 cut(s)	215
HindII	GTYRAC	1 cut(s)	215
HinfI	GANTC	2 cut(s)	437, 629
HpaII	CCGG	1 cut(s)	618
HphI	GGTGA	1 cut(s)	590
Hpy166II	GTNNAC	1 cut(s)	215
Hpy188I	TCNGA	4 cut(s)	48, 383, 436, 628
Hpy188III	TCNNGA	7 cut(s)	19, 145, 391, 506, 570, 635, 650
Hpy8I	GTNNAC	1 cut(s)	215
Hpy99I	CGWCG	1 cut(s)	678
HpyCH4IV	ACGT	2 cut(s)	94, 211
HpyCH4V	TGCA	8 cut(s)	232, 287, 320, 355, 362, 530, 590, 605
HpyF10VI	GCNNNNNNNGC	3 cut(s)	284, 326, 335
HpyF3I	CTNAG	2 cut(s)	47, 454
HpySE526I	ACGT	2 cut(s)	94, 211
Hsp92II	CATG	3 cut(s)	70, 313, 418
Ksp22I	TGATCA	1 cut(s)	378
Kzo9I	GATC	5 cut(s)	50, 141, 378, 566, 646
LmnI	GCTCC	2 cut(s)	487, 553
Lsp1109I	GCAGC	2 cut(s)	160, 589
LweI	GCATC	1 cut(s)	539
MabI	ACCWGGT	1 cut(s)	498
MaeII	ACGT	2 cut(s)	94, 211
MalI	GATC	5 cut(s)	52, 143, 380, 568, 648
MboI	GATC	5 cut(s)	50, 141, 378, 566, 646
MboII	GAAGA	7 cut(s)	7, 34, 37, 101, 485, 534, 667
MflI	RGATCY	2 cut(s)	50, 646
MhlI	GDGCHC	2 cut(s)	247, 492
MluCI	AATT	4 cut(s)	128, 297, 369, 386
MlyI	GAGTC	1 cut(s)	446
MmeI	TCCRAC	1 cut(s)	96
MroXI	GAANNNNTTC	1 cut(s)	14
MseI	TTAA	1 cut(s)	372
MslI	CAYNNNNRTG	1 cut(s)	308
MspI	CCGG	1 cut(s)	618
MspR9I	CCNGG	4 cut(s)	188, 500, 618, 619
Mva1269I	GAATGC	1 cut(s)	604
MvaI	CCWGG	2 cut(s)	188, 500
MwoI	GCNNNNNNNGC	3 cut(s)	284, 326, 335
NciI	CCSGG	2 cut(s)	618, 619
NdeI	CATATG	1 cut(s)	680
NdeII	GATC	5 cut(s)	50, 141, 378, 566, 646
NlaIII	CATG	3 cut(s)	70, 313, 418
PctI	GAATGC	1 cut(s)	604
PdmI	GAANNNNTTC	1 cut(s)	14
PfeI	GAWTC	1 cut(s)	629
PkrI	GCNGC	2 cut(s)	175, 604
PleI	GAGTC	1 cut(s)	445
PpsI	GAGTC	1 cut(s)	445
Psp124BI	GAGCTC	1 cut(s)	492
Psp6I	CCWGG	2 cut(s)	186, 498
PspGI	CCWGG	2 cut(s)	186, 498
PsuI	RGATCY	2 cut(s)	50, 646
RseI	CAYNNNNRTG	1 cut(s)	308
SacI	GAGCTC	1 cut(s)	492
SaqAI	TTAA	1 cut(s)	372
SatI	GCNGC	2 cut(s)	174, 603
Sau3AI	GATC	5 cut(s)	50, 141, 378, 566, 646
SchI	GAGTC	1 cut(s)	446
ScrFI	CCNGG	4 cut(s)	188, 500, 618, 619
SduI	GDGCHC	2 cut(s)	247, 492
SexAI	ACCWGGT	1 cut(s)	498
SfaNI	GCATC	1 cut(s)	539
SmaI	CCCGGG	1 cut(s)	619
SmiMI	CAYNNNNRTG	1 cut(s)	308
SmlI	CTYRAG	1 cut(s)	650
SmoI	CTYRAG	1 cut(s)	650
Sse9I	AATT	4 cut(s)	128, 297, 369, 386
SstI	GAGCTC	1 cut(s)	492
StyD4I	CCNGG	4 cut(s)	186, 498, 616, 617
StyI	CCWWGG	1 cut(s)	593
TaiI	ACGT	2 cut(s)	97, 214
TaqI	TCGA	1 cut(s)	507
TasI	AATT	4 cut(s)	128, 297, 369, 386
TfiI	GAWTC	1 cut(s)	629
Tru1I	TTAA	1 cut(s)	372
Tru9I	TTAA	1 cut(s)	372
TseI	GCWGC	2 cut(s)	173, 602
TspDTI	ATGAA	3 cut(s)	17, 326, 356
TspMI	CCCGGG	1 cut(s)	617
XapI	RAATTY	1 cut(s)	386
XcmI	CCANNNNNNNNNTGG	1 cut(s)	184
XmaI	CCCGGG	1 cut(s)	617
XmnI	GAANNNNTTC	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.