RchiOBHm_Chr2g0107161

Metal transporter

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Forward (+)
18520802 .. 18523896
3095 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1527 bp
ATGGCTGCACAGGAGCACGAACAGCCGCTTCTCGACTCCGAAGGCCGCGACCAGTTGGAAGAGACAGCCTACGACTCGGACGACAAGGTCCACATCGTCGGAATCGACGACGCCGATGACGGCTCCAGAACGCCGCCGTTTTCATGGAAGAAGCTCTGGCTGTTCACCGGGCCGGGGTTCCTGATGAGCATCGCTTTTCTCGACCCGGGAAACCTGGAGGGCGATCTTCAGGCCGGAGCGATCGCCGGGAACTCGCTGCTGTGGCTTCTGATGTGGGCGACGGCGATGGGGCTTTTGGTGCAGCTGTTGTCGGCACGGCTCGGCGTGGCGACGGGGCGCCACCTGGCGGAGCTGTGCAGGGAGGAGTACCCGAGGTGGGCTGGGCTTGTGCTGTGGGTGATGGCTGAGCTGGCGCTGATTGGGGCGGATATTCAGGAGGTTATAGGTAGTGCGATTGCGATTAAGATTTTGAGTAATGGGGCTTTGCCGCTTTGGGCTGGAGTCGTCATAACGGCGTTGGATTGTTTTATCTTTCTACTTTTGGAGAACTATGGCGTCAGGAAACTGGAAGCTGTTTTCGCAGTTCTAATTGCAACAATGGCGCTAACATTTGCCTGGATGTTTGGTGAAGCAAAGCCAAGCGGCATTGAACTTCTGCTTGGTATTCTGATTCCGAAACTTAGCTCCAGGACAATCAAGCAGGCTGTTGGAGTTGTGGGGTGCATTATTATGCCTCACAATGTGTTCTTGCACTCGGCTCTTGTACAGTCGAGAGAGATTGATCTCAGCAAGAAAGGTCGAGTTCAGGAAGCTCTCAATTACTATAGCATTGAGTCCACCATTGCTCTTATTATCTCCTTCGTTATCAATCTGTTTGTTACCACCGTGTTTGCCAAGGGTTTTTATGGTACTGAACTGGCGGATAGTATAGGCCTTGTAAATGCAGGGCAGTATCTTCAAGAGAAGTATGGGGGTGGTTTGTTCCCAATTCTTTACATTTGGGCTATCGGTTTATTAGCGGCTGGCCAGAGTAGCACTATCACAGGTACCTATGCAGGGCAGTTCATCATGGGAGGTTTCTTAAACTTGAGATTGAAGAAATGGATGAGGGCATTGATCACAAGAAGCTGTGCAATCATTCCAACTATAATTGTTGCTCTAGTGTTTGATACATCTGAGGACACATTGGATGTTCTGAATGAGTGGCTTAATGTGCTTCAGTCAATTCAGATTCCTTTTGCCTTGATTCCCTTGCTTTTCTTGGTGTCAAGCGAGCGAATCATGGGATCTTTTAAGATTGGCAATGTTCTCAAGATGGTTGCATGGCTTGTGGCTGCACTGGTGATGGTGATCAATGGCTATCTGTTGGTGGACTTCTTTTCTAACGAAGTGAACGGGGTGTTGTTTGGCTGTGTAGTCTGTGCCTTTACTGCAGGATATGCAGCGTTTATAGTCTACCTTGTTTTCAAGGGAATCACCTTTCCAAGGTGGGGCAAATCAAAGAGTGTCACTGACACACTGAACTGA

Protein Analysis

508

Amino Acids

55.44

Weight (kDa)

5.14

Isoelectric Point (pI)

32.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nramp PF01566 73 - 434 1.6e-110 Natural resistance-associated macrophage protein-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011831)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 86
Acc65I GGTACC 1 cut(s) 1046
AccB1I GGYRCC 2 cut(s) 336, 1046
AccI GTMKAC 1 cut(s) 1455
AccII CGCG 1 cut(s) 48
AciI CCGC 9 cut(s) 26, 46, 134, 347, 425, 488, 642, 920, 1019
AclWI GGATC 1 cut(s) 1294
AcoI YGGCCR 1 cut(s) 1024
AcuI CTGAAG 2 cut(s) 212, 1202
AcyI GRCGYC 3 cut(s) 111, 337, 555
AdeI CACNNNGTG 1 cut(s) 742
AfaI GTAC 4 cut(s) 368, 765, 910, 1048
AfiI CCNNNNNNNGG 6 cut(s) 174, 346, 376, 1056, 1485, 1490
AgsI TTSAA 4 cut(s) 650, 959, 1096, 1468
AjnI CCWGG 4 cut(s) 213, 342, 614, 686
AjuI GAANNNNNNNTTGG 2 cut(s) 642, 674
AluBI AGCT 8 cut(s) 154, 304, 352, 409, 572, 684, 812, 1128
AluI AGCT 8 cut(s) 154, 304, 352, 409, 572, 684, 812, 1128
Alw21I GWGCWC 1 cut(s) 18
Alw26I GTCTC 1 cut(s) 56
AlwI GGATC 1 cut(s) 1294
Ama87I CYCGRG 2 cut(s) 205, 370
AoxI GGCC 5 cut(s) 43, 170, 231, 931, 1024
ApeKI GCWGC 5 cut(s) 5, 256, 301, 1334, 1442
AsiSI GCGATCGC 1 cut(s) 243
Asp718I GGTACC 1 cut(s) 1046
AspLEI GCGC 3 cut(s) 339, 415, 604
AspS9I GGNCC 2 cut(s) 88, 170
AsuC2I CCSGG 5 cut(s) 169, 174, 206, 207, 247
AsuHPI GGTGA 6 cut(s) 157, 409, 638, 1354, 1360, 1468
AvaI CYCGRG 2 cut(s) 205, 370
AvaII GGWCC 1 cut(s) 88
BalI TGGCCA 1 cut(s) 1026
BanI GGYRCC 2 cut(s) 336, 1046
Bbv12I GWGCWC 1 cut(s) 18
BbvI GCAGC 4 cut(s) 243, 313, 1321, 1454
BccI CCATC 4 cut(s) 280, 394, 1309, 1339
BceAI ACGGC 5 cut(s) 121, 136, 297, 332, 528
BciT130I CCWGG 4 cut(s) 215, 344, 616, 688
BclI TGATCA 2 cut(s) 1116, 1350
BcnI CCSGG 5 cut(s) 169, 174, 206, 207, 247
BcoDI GTCTC 1 cut(s) 56
BfaI CTAG 1 cut(s) 1160
BfmI CTRYAG 2 cut(s) 823, 1431
BfoI RGCGCY 3 cut(s) 340, 416, 605
BlpI GCTNAGC 1 cut(s) 405
Bme1390I CCNGG 9 cut(s) 169, 174, 206, 207, 215, 247, 344, 616, 688
Bme18I GGWCC 1 cut(s) 88
BmeT110I CYCGRG 2 cut(s) 205, 370
BmgT120I GGNCC 2 cut(s) 88, 170
BmiI GGNNCC 4 cut(s) 124, 179, 338, 1048
BmrFI CCNGG 9 cut(s) 169, 174, 206, 207, 215, 247, 344, 616, 688
BmsI GCATC 1 cut(s) 198
BpmI CTGGAG 4 cut(s) 109, 236, 519, 670
Bpu1102I GCTNAGC 1 cut(s) 405
BpuEI CTTGAG 2 cut(s) 1108, 1295
BpuMI CCSGG 5 cut(s) 169, 174, 206, 207, 247
BsaBI GATNNNNATC 2 cut(s) 188, 1349
BsaHI GRCGYC 3 cut(s) 111, 337, 555
BsaJI CCNNGG 5 cut(s) 173, 205, 371, 894, 1484
Bsc4I CCNNNNNNNGG 6 cut(s) 174, 346, 376, 1056, 1485, 1490
Bse1I ACTGG 4 cut(s) 52, 570, 921, 1344
Bse3DI GCAATG 2 cut(s) 840, 1309
Bse8I GATNNNNATC 2 cut(s) 188, 1349
BseBI CCWGG 4 cut(s) 215, 344, 616, 688
BseDI CCNNGG 5 cut(s) 173, 205, 371, 894, 1484
BseGI GGATG 3 cut(s) 624, 1110, 1195
BseJI GATNNNNATC 2 cut(s) 188, 1349
BseLI CCNNNNNNNGG 6 cut(s) 174, 346, 376, 1056, 1485, 1490
BseMI GCAATG 2 cut(s) 840, 1309
BseMII CTCAG 3 cut(s) 396, 799, 1167
BseNI ACTGG 4 cut(s) 52, 570, 921, 1344
BseRI GAGGAG 1 cut(s) 377
BseXI GCAGC 4 cut(s) 243, 313, 1321, 1454
BseYI CCCAGC 1 cut(s) 380
BsgI GTGCAG 3 cut(s) 320, 376, 1320
Bsh1236I CGCG 1 cut(s) 48
Bsh1285I CGRYCG 1 cut(s) 243
BshFI GGCC 5 cut(s) 45, 172, 233, 933, 1026
BshNI GGYRCC 2 cut(s) 336, 1046
BsiEI CGRYCG 1 cut(s) 243
BsiHKAI GWGCWC 1 cut(s) 18
BsiHKCI CYCGRG 2 cut(s) 205, 370
BsiSI CCGG 5 cut(s) 168, 173, 206, 234, 246
BslI CCNNNNNNNGG 6 cut(s) 174, 346, 376, 1056, 1485, 1490
BsmAI GTCTC 1 cut(s) 56
BsnI GGCC 5 cut(s) 45, 172, 233, 933, 1026
BsoBI CYCGRG 2 cut(s) 205, 370
Bsp1286I GDGCHC 1 cut(s) 18
Bsp1407I TGTACA 1 cut(s) 763
Bsp143I GATC 6 cut(s) 223, 240, 781, 1116, 1286, 1350
Bsp1720I GCTNAGC 1 cut(s) 405
BspACI CCGC 9 cut(s) 26, 46, 134, 347, 425, 488, 642, 920, 1019
BspANI GGCC 5 cut(s) 45, 172, 233, 933, 1026
BspCNI CTCAG 3 cut(s) 397, 798, 1168
BspFNI CGCG 1 cut(s) 48
BspLI GGNNCC 4 cut(s) 124, 179, 338, 1048
BspMAI CTGCAG 1 cut(s) 1435
BspPI GGATC 1 cut(s) 1294
BspT107I GGYRCC 2 cut(s) 336, 1046
BsrDI GCAATG 2 cut(s) 840, 1309
BsrGI TGTACA 1 cut(s) 763
BsrI ACTGG 4 cut(s) 52, 570, 921, 1344
BssECI CCNNGG 5 cut(s) 173, 205, 371, 894, 1484
BssMI GATC 6 cut(s) 223, 240, 781, 1116, 1286, 1350
BssNI GRCGYC 3 cut(s) 111, 337, 555
BssT1I CCWWGG 2 cut(s) 894, 1484
Bst2UI CCWGG 4 cut(s) 215, 344, 616, 688
Bst4CI ACNGT 2 cut(s) 768, 886
Bst6I CTCTTC 1 cut(s) 54
BstACI GRCGYC 3 cut(s) 111, 337, 555
BstAPI GCANNNNNTGC 1 cut(s) 1439
BstAUI TGTACA 1 cut(s) 763
BstC8I GCNNGC 4 cut(s) 411, 702, 1024, 1274
BstDEI CTNAG 4 cut(s) 405, 680, 785, 1176
BstENI CCTNNNNNAGG 1 cut(s) 1483
BstF5I GGATG 3 cut(s) 624, 1110, 1195
BstFNI CGCG 1 cut(s) 48
BstH2I RGCGCY 3 cut(s) 340, 416, 605
BstHHI GCGC 3 cut(s) 339, 415, 604
BstKTI GATC 6 cut(s) 226, 243, 784, 1119, 1289, 1353
BstMAI GTCTC 1 cut(s) 56
BstMBI GATC 6 cut(s) 223, 240, 781, 1116, 1286, 1350
BstMCI CGRYCG 1 cut(s) 243
BstNI CCWGG 4 cut(s) 215, 344, 616, 688
BstSCI CCNGG 9 cut(s) 167, 172, 204, 205, 213, 245, 342, 614, 686
BstSFI CTRYAG 2 cut(s) 823, 1431
BstUI CGCG 1 cut(s) 48
BstV1I GCAGC 4 cut(s) 243, 313, 1321, 1454
BstX2I RGATCY 1 cut(s) 1286
BstYI RGATCY 1 cut(s) 1286
BsuRI GGCC 5 cut(s) 45, 172, 233, 933, 1026
BtgZI GCGATG 2 cut(s) 175, 299
BtsCI GGATG 3 cut(s) 624, 1110, 1195
BtsIMutI CAGTG 3 cut(s) 1337, 1509, 1517
Cac8I GCNNGC 4 cut(s) 411, 702, 1024, 1274
CfoI GCGC 3 cut(s) 339, 415, 604
Cfr13I GGNCC 2 cut(s) 88, 170
Cfr9I CCCGGG 1 cut(s) 205
CseI GACGC 2 cut(s) 119, 544
Csp6I GTAC 4 cut(s) 367, 764, 909, 1047
CspCI CAANNNNNGTGG 2 cut(s) 871, 906
CviAII CATG 4 cut(s) 144, 1069, 1282, 1323
CviQI GTAC 4 cut(s) 367, 764, 909, 1047
DdeI CTNAG 4 cut(s) 405, 680, 785, 1176
DinI GGCGCC 1 cut(s) 338
DpnI GATC 6 cut(s) 225, 242, 783, 1118, 1288, 1352
DpnII GATC 6 cut(s) 223, 240, 781, 1116, 1286, 1350
DraIII CACNNNGTG 1 cut(s) 742
DrdI GACNNNNNNGTC 1 cut(s) 86
DseDI GACNNNNNNGTC 1 cut(s) 86
EaeI YGGCCR 1 cut(s) 1024
Eam1104I CTCTTC 1 cut(s) 54
EarI CTCTTC 1 cut(s) 54
EciI GGCGGA 3 cut(s) 362, 440, 935
Eco130I CCWWGG 2 cut(s) 894, 1484
Eco147I AGGCCT 1 cut(s) 933
Eco47I GGWCC 1 cut(s) 88
Eco57I CTGAAG 2 cut(s) 212, 1202
Eco88I CYCGRG 2 cut(s) 205, 370
EcoNI CCTNNNNNAGG 1 cut(s) 1483
EcoRII CCWGG 4 cut(s) 213, 342, 614, 686
EcoT14I CCWWGG 2 cut(s) 894, 1484
EgeI GGCGCC 1 cut(s) 338
EheI GGCGCC 1 cut(s) 338
ErhI CCWWGG 2 cut(s) 894, 1484
FaeI CATG 4 cut(s) 147, 1072, 1285, 1326
FatI CATG 4 cut(s) 143, 1068, 1281, 1322
FbaI TGATCA 2 cut(s) 1116, 1350
FblI GTMKAC 1 cut(s) 1455
FokI GGATG 3 cut(s) 631, 1117, 1202
FspBI CTAG 1 cut(s) 1160
GlaI GCGC 3 cut(s) 338, 414, 603
GsaI CCCAGC 1 cut(s) 384
GsuI CTGGAG 4 cut(s) 109, 236, 519, 670
HaeII RGCGCY 3 cut(s) 340, 416, 605
HaeIII GGCC 5 cut(s) 45, 172, 233, 933, 1026
HapII CCGG 5 cut(s) 168, 173, 206, 234, 246
HgaI GACGC 2 cut(s) 119, 544
HhaI GCGC 3 cut(s) 339, 415, 604
Hin1I GRCGYC 3 cut(s) 111, 337, 555
Hin1II CATG 4 cut(s) 147, 1072, 1285, 1326
Hin6I GCGC 3 cut(s) 337, 413, 602
HinP1I GCGC 3 cut(s) 337, 413, 602
HpaII CCGG 5 cut(s) 168, 173, 206, 234, 246
HphI GGTGA 6 cut(s) 157, 409, 638, 1354, 1360, 1468
Hpy166II GTNNAC 6 cut(s) 91, 165, 837, 1372, 1393, 1456
Hpy188I TCNGA 9 cut(s) 40, 79, 101, 270, 669, 675, 1177, 1197, 1230
Hpy8I GTNNAC 6 cut(s) 91, 165, 837, 1372, 1393, 1456
Hpy99I CGWCG 5 cut(s) 101, 110, 113, 283, 334
HpyAV CCTTC 2 cut(s) 35, 868
HpyCH4III ACNGT 2 cut(s) 768, 886
HpyF3I CTNAG 4 cut(s) 405, 680, 785, 1176
Hsp92I GRCGYC 3 cut(s) 111, 337, 555
Hsp92II CATG 4 cut(s) 147, 1072, 1285, 1326
HspAI GCGC 3 cut(s) 337, 413, 602
KasI GGCGCC 1 cut(s) 336
KpnI GGTACC 1 cut(s) 1050
Ksp22I TGATCA 2 cut(s) 1116, 1350
Kzo9I GATC 6 cut(s) 223, 240, 781, 1116, 1286, 1350
LmnI GCTCC 5 cut(s) 13, 128, 236, 349, 689
Lsp1109I GCAGC 4 cut(s) 243, 313, 1321, 1454
LweI GCATC 1 cut(s) 198
MaeI CTAG 1 cut(s) 1160
MaeIII GTNAC 2 cut(s) 877, 1507
MalI GATC 6 cut(s) 225, 242, 783, 1118, 1288, 1352
MboI GATC 6 cut(s) 223, 240, 781, 1116, 1286, 1350
MboII GAAGA 5 cut(s) 71, 160, 218, 947, 1108
MflI RGATCY 1 cut(s) 1286
MhlI GDGCHC 1 cut(s) 18
MlsI TGGCCA 1 cut(s) 1026
MluCI AATT 5 cut(s) 588, 817, 987, 1149, 1224
MluNI TGGCCA 1 cut(s) 1026
Mly113I GGCGCC 1 cut(s) 337
MlyI GAGTC 4 cut(s) 29, 68, 510, 842
MmeI TCCRAC 5 cut(s) 36, 79, 498, 688, 1166
MnlI CCTC 8 cut(s) 211, 355, 366, 430, 744, 1067, 1101, 1171
Mox20I TGGCCA 1 cut(s) 1026
MscI TGGCCA 1 cut(s) 1026
MseI TTAA 4 cut(s) 462, 1082, 1209, 1293
MslI CAYNNNNRTG 1 cut(s) 728
Msp20I TGGCCA 1 cut(s) 1026
MspA1I CMGCKG 1 cut(s) 304
MspI CCGG 5 cut(s) 168, 173, 206, 234, 246
MspR9I CCNGG 9 cut(s) 169, 174, 206, 207, 215, 247, 344, 616, 688
MvaI CCWGG 4 cut(s) 215, 344, 616, 688
MvnI CGCG 1 cut(s) 48
NarI GGCGCC 1 cut(s) 337
NciI CCSGG 5 cut(s) 169, 174, 206, 207, 247
NdeII GATC 6 cut(s) 223, 240, 781, 1116, 1286, 1350
NlaIII CATG 4 cut(s) 147, 1072, 1285, 1326
NlaIV GGNNCC 4 cut(s) 124, 179, 338, 1048
NmeAIII GCCGAG 2 cut(s) 300, 734
NmuCI GTSAC 1 cut(s) 1507
PceI AGGCCT 1 cut(s) 933
PcsI WCGNNNNNNNCGW 5 cut(s) 78, 102, 105, 111, 198
PfeI GAWTC 6 cut(s) 102, 670, 1231, 1246, 1278, 1473
PflFI GACNNNGTC 1 cut(s) 86
PfoI TCCNGGA 1 cut(s) 686
Ple19I CGATCG 1 cut(s) 243
PleI GAGTC 4 cut(s) 29, 68, 509, 841
PluTI GGCGCC 1 cut(s) 340
PpsI GAGTC 4 cut(s) 29, 68, 509, 841
Psp6I CCWGG 4 cut(s) 213, 342, 614, 686
PspFI CCCAGC 1 cut(s) 380
PspGI CCWGG 4 cut(s) 213, 342, 614, 686
PspN4I GGNNCC 4 cut(s) 124, 179, 338, 1048
PspPI GGNCC 2 cut(s) 88, 170
PstI CTGCAG 1 cut(s) 1435
PsuI RGATCY 1 cut(s) 1286
PsyI GACNNNGTC 1 cut(s) 86
PvuI CGATCG 1 cut(s) 243
PvuII CAGCTG 1 cut(s) 304
RgaI GCGATCGC 1 cut(s) 243
RsaI GTAC 4 cut(s) 368, 765, 910, 1048
RsaNI GTAC 4 cut(s) 367, 764, 909, 1047
RseI CAYNNNNRTG 1 cut(s) 728
SaqAI TTAA 4 cut(s) 462, 1082, 1209, 1293
Sau3AI GATC 6 cut(s) 223, 240, 781, 1116, 1286, 1350
Sau96I GGNCC 2 cut(s) 88, 170
SchI GAGTC 4 cut(s) 29, 68, 510, 842
ScrFI CCNGG 9 cut(s) 169, 174, 206, 207, 215, 247, 344, 616, 688
SduI GDGCHC 1 cut(s) 18
SfaAI GCGATCGC 1 cut(s) 243
SfaNI GCATC 1 cut(s) 198
SfcI CTRYAG 2 cut(s) 823, 1431
SfoI GGCGCC 1 cut(s) 338
SgfI GCGATCGC 1 cut(s) 243
SinI GGWCC 1 cut(s) 88
SmaI CCCGGG 1 cut(s) 207
SmiMI CAYNNNNRTG 1 cut(s) 728
SmlI CTYRAG 2 cut(s) 1087, 1310
SmoI CTYRAG 2 cut(s) 1087, 1310
Sse9I AATT 5 cut(s) 588, 817, 987, 1149, 1224
SseBI AGGCCT 1 cut(s) 933
SsiI CCGC 9 cut(s) 26, 46, 134, 347, 425, 488, 642, 920, 1019
SspDI GGCGCC 1 cut(s) 336
SspMI CTAG 1 cut(s) 1160
StuI AGGCCT 1 cut(s) 933
StyD4I CCNGG 9 cut(s) 167, 172, 204, 205, 213, 245, 342, 614, 686
StyI CCWWGG 2 cut(s) 894, 1484
TaaI ACNGT 2 cut(s) 768, 886
TaqI TCGA 5 cut(s) 33, 105, 201, 770, 799
TasI AATT 5 cut(s) 588, 817, 987, 1149, 1224
TatI WGTACW 1 cut(s) 763
TauI GCSGC 6 cut(s) 28, 48, 136, 490, 645, 1022
TfiI GAWTC 6 cut(s) 102, 670, 1231, 1246, 1278, 1473
Tru1I TTAA 4 cut(s) 462, 1082, 1209, 1293
Tru9I TTAA 4 cut(s) 462, 1082, 1209, 1293
TscAI CASTG 3 cut(s) 1344, 1516, 1524
TseFI GTSAC 1 cut(s) 1507
TseI GCWGC 5 cut(s) 5, 256, 301, 1334, 1442
Tsp45I GTSAC 1 cut(s) 1507
TspDTI ATGAA 2 cut(s) 132, 1054
TspMI CCCGGG 1 cut(s) 205
TspRI CASTG 3 cut(s) 1344, 1516, 1524
Tth111I GACNNNGTC 1 cut(s) 86
VpaK11BI GGWCC 1 cut(s) 88
XagI CCTNNNNNAGG 1 cut(s) 1483
XmaI CCCGGG 1 cut(s) 205
XmiI GTMKAC 1 cut(s) 1455
XspI CTAG 1 cut(s) 1160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.