Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0020499

Physical Location & Seq

Genomic Coordinates Forward (+)

20040821 .. 20041424

Gene Structure 604 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 219 bp

ATGAGAACCACAATGGGGAGCAAGATGGGAAGTAACCAAGCCGCCATCTCCTTCCTCACCAACCTTGCACGTGTCGCTTTCGATCTCGGCGTCGGAGCCATCATCGTCAACTTCGTGCTCTGCAGCGTCAACGACGTCCAAGCTCTGGCGCACGAGAGCTTGATCCGCCGCCAAGTTAGATCTCCAAGCCGGAAGCCCCTCGGAAATCTCCAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0005773 GO:0005774 GO:0005886 GO:0006950 GO:0006970 GO:0006979 GO:0006996 GO:0007005 GO:0007275 GO:0008150 GO:0009505 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009791 GO:0009987 GO:0010033 GO:0010035 GO:0016020 GO:0016043 GO:0019866 GO:0022622 GO:0030312 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0048364 GO:0048519 GO:0048523 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051301 GO:0051302 GO:0051782 GO:0065007 GO:0070013 GO:0070469 GO:0071731 GO:0071840 GO:0071944 GO:0090696 GO:0097366 GO:0098588 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:0098805 GO:0099402 GO:1901698 GO:1901700 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Band_7

Protein Analysis

72

Amino Acids

7.74

Weight (kDa)

11.35

Isoelectric Point (pI)

37.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020499)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0108681 RchiOBHm_Chr2g0149741
rosa_samantha	Rh2BG486900 Rh2CG207900 Rh2DG211100 Rh4CG081900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	138
AccB7I	CCANNNNNTGG	1 cut(s)	145
AciI	CCGC	3 cut(s)	42, 166, 169
AclWI	GGATC	1 cut(s)	157
AcvI	CACGTG	1 cut(s)	71
AcyI	GRCGYC	2 cut(s)	90, 135
AfiI	CCNNNNNNNGG	2 cut(s)	15, 145
AflIII	ACRYGT	1 cut(s)	70
AluBI	AGCT	3 cut(s)	143, 159, 215
AluI	AGCT	3 cut(s)	143, 159, 215
Alw21I	GWGCWC	1 cut(s)	120
AlwI	GGATC	1 cut(s)	157
ApeKI	GCWGC	1 cut(s)	123
AspLEI	GCGC	1 cut(s)	151
AsuHPI	GGTGA	1 cut(s)	49
BauI	CACGAG	1 cut(s)	152
BbrPI	CACGTG	1 cut(s)	71
Bbv12I	GWGCWC	1 cut(s)	120
BbvI	GCAGC	1 cut(s)	135
BccI	CCATC	3 cut(s)	19, 53, 107
BfmI	CTRYAG	1 cut(s)	121
BglII	AGATCT	1 cut(s)	179
BisI	GCNGC	3 cut(s)	42, 124, 169
BlsI	GCNGC	3 cut(s)	43, 125, 170
BmiI	GGNNCC	1 cut(s)	97
BsaAI	YACGTR	1 cut(s)	71
BsaHI	GRCGYC	2 cut(s)	90, 135
BsaJI	CCNNGG	1 cut(s)	199
Bsc4I	CCNNNNNNNGG	2 cut(s)	15, 145
BseDI	CCNNGG	1 cut(s)	199
BseLI	CCNNNNNNNGG	2 cut(s)	15, 145
BseXI	GCAGC	1 cut(s)	135
BsiHKAI	GWGCWC	1 cut(s)	120
BsiSI	CCGG	1 cut(s)	190
BslI	CCNNNNNNNGG	2 cut(s)	15, 145
Bsp1286I	GDGCHC	1 cut(s)	120
Bsp143I	GATC	3 cut(s)	82, 162, 179
BspACI	CCGC	3 cut(s)	42, 166, 169
BspLI	GGNNCC	1 cut(s)	97
BspMAI	CTGCAG	1 cut(s)	125
BspPI	GGATC	1 cut(s)	157
BssECI	CCNNGG	1 cut(s)	199
BssMI	GATC	3 cut(s)	82, 162, 179
BssNI	GRCGYC	2 cut(s)	90, 135
BssSI	CACGAG	1 cut(s)	152
Bst2BI	CACGAG	1 cut(s)	152
BstACI	GRCGYC	2 cut(s)	90, 135
BstBAI	YACGTR	1 cut(s)	71
BstHHI	GCGC	1 cut(s)	151
BstKTI	GATC	3 cut(s)	85, 165, 182
BstMBI	GATC	3 cut(s)	82, 162, 179
BstMWI	GCNNNNNNNGC	2 cut(s)	74, 165
BstSFI	CTRYAG	1 cut(s)	121
BstV1I	GCAGC	1 cut(s)	135
BstX2I	RGATCY	1 cut(s)	179
BstYI	RGATCY	1 cut(s)	179
CfoI	GCGC	1 cut(s)	151
CseI	GACGC	2 cut(s)	79, 115
CviJI	RGCY	7 cut(s)	41, 98, 143, 159, 189, 196, 215
CviKI_1	RGCY	7 cut(s)	41, 98, 143, 159, 189, 196, 215
DpnI	GATC	3 cut(s)	84, 164, 181
DpnII	GATC	3 cut(s)	82, 162, 179
EciI	GGCGGA	1 cut(s)	155
Eco72I	CACGTG	1 cut(s)	71
Fnu4HI	GCNGC	3 cut(s)	42, 124, 169
Fsp4HI	GCNGC	3 cut(s)	42, 124, 169
GlaI	GCGC	1 cut(s)	150
GluI	GCNGC	3 cut(s)	42, 124, 169
HapII	CCGG	1 cut(s)	190
HgaI	GACGC	2 cut(s)	79, 115
HhaI	GCGC	1 cut(s)	151
Hin1I	GRCGYC	2 cut(s)	90, 135
Hin6I	GCGC	1 cut(s)	149
HinP1I	GCGC	1 cut(s)	149
HincII	GTYRAC	2 cut(s)	109, 130
HindII	GTYRAC	2 cut(s)	109, 130
HindIII	AAGCTT	1 cut(s)	213
HpaII	CCGG	1 cut(s)	190
HphI	GGTGA	1 cut(s)	49
Hpy166II	GTNNAC	2 cut(s)	109, 130
Hpy188I	TCNGA	2 cut(s)	95, 203
Hpy8I	GTNNAC	2 cut(s)	109, 130
Hpy99I	CGWCG	2 cut(s)	95, 137
HpyAV	CCTTC	1 cut(s)	61
HpyCH4IV	ACGT	2 cut(s)	70, 135
HpyCH4V	TGCA	2 cut(s)	68, 123
HpyF10VI	GCNNNNNNNGC	2 cut(s)	74, 165
HpySE526I	ACGT	2 cut(s)	70, 135
Hsp92I	GRCGYC	2 cut(s)	90, 135
HspAI	GCGC	1 cut(s)	149
Kzo9I	GATC	3 cut(s)	82, 162, 179
LmnI	GCTCC	2 cut(s)	18, 95
LpnPI	CCDG	2 cut(s)	131, 203
Lsp1109I	GCAGC	1 cut(s)	135
MaeII	ACGT	2 cut(s)	70, 135
MaeIII	GTNAC	1 cut(s)	32
MalI	GATC	3 cut(s)	84, 164, 181
MboI	GATC	3 cut(s)	82, 162, 179
MflI	RGATCY	1 cut(s)	179
MhlI	GDGCHC	1 cut(s)	120
MmeI	TCCRAC	1 cut(s)	73
MnlI	CCTC	2 cut(s)	65, 209
MspI	CCGG	1 cut(s)	190
MwoI	GCNNNNNNNGC	2 cut(s)	74, 165
NdeII	GATC	3 cut(s)	82, 162, 179
NlaIV	GGNNCC	1 cut(s)	97
NmeAIII	GCCGAG	1 cut(s)	66
PcsI	WCGNNNNNNNCGW	2 cut(s)	87, 111
PflMI	CCANNNNNTGG	1 cut(s)	145
PkrI	GCNGC	3 cut(s)	43, 125, 170
PmaCI	CACGTG	1 cut(s)	71
PmlI	CACGTG	1 cut(s)	71
Ppu21I	YACGTR	1 cut(s)	71
PspCI	CACGTG	1 cut(s)	71
PspN4I	GGNNCC	1 cut(s)	97
PstI	CTGCAG	1 cut(s)	125
PsuI	RGATCY	1 cut(s)	179
SatI	GCNGC	3 cut(s)	42, 124, 169
Sau3AI	GATC	3 cut(s)	82, 162, 179
SduI	GDGCHC	1 cut(s)	120
SetI	ASST	6 cut(s)	66, 73, 138, 145, 161, 217
SfcI	CTRYAG	1 cut(s)	121
SsiI	CCGC	3 cut(s)	42, 166, 169
TaiI	ACGT	2 cut(s)	73, 138
TaqI	TCGA	1 cut(s)	81
TauI	GCSGC	2 cut(s)	44, 171
TseI	GCWGC	1 cut(s)	123
Van91I	CCANNNNNTGG	1 cut(s)	145
ZraI	GACGTC	1 cut(s)	136

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.