Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0020499

Physical Location & Seq

Genomic Coordinates Forward (+)

67552664 .. 67553238

Gene Structure 575 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ51914

Sequence Viewer

CDS Protein Promoter (2k)

Length: 201 bp

ATGAGAACCACAATGGGGAGCAAGATGGGAAGTAACCAAGCTGTCATCTCCTTCCTCACCAACCTTGCATGCGCAGCTTTTGATCTCGGCGTCGGAGCCACCATCGTCAACTCCGACGTCCAAGCTCTGGAGCACGAGAGCTTGATCCGCTGCCAAGTGCGATCTCCTACCCGGAAGCCCCTCGGAAATCTCCAAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0005773 GO:0005774 GO:0005886 GO:0006950 GO:0006970 GO:0006979 GO:0006996 GO:0007005 GO:0007275 GO:0008150 GO:0009505 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009791 GO:0009987 GO:0010033 GO:0010035 GO:0016020 GO:0016043 GO:0019866 GO:0022622 GO:0030312 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0048364 GO:0048519 GO:0048523 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051301 GO:0051302 GO:0051782 GO:0065007 GO:0070013 GO:0070469 GO:0071731 GO:0071840 GO:0071944 GO:0090696 GO:0097366 GO:0098588 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:0098805 GO:0099402 GO:1901698 GO:1901700 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Band_7

Protein Analysis

66

Amino Acids

7.05

Weight (kDa)

8.89

Isoelectric Point (pI)

29.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020499)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0108681 RchiOBHm_Chr2g0149741
rosa_samantha	Rh2BG486900 Rh2CG207900 Rh2DG211100 Rh4CG081900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	120
Acc16I	TGCGCA	1 cut(s)	73
AccB7I	CCANNNNNTGG	1 cut(s)	127
AciI	CCGC	1 cut(s)	148
AclWI	GGATC	1 cut(s)	139
AcyI	GRCGYC	2 cut(s)	90, 117
AfiI	CCNNNNNNNGG	2 cut(s)	15, 127
AluBI	AGCT	4 cut(s)	41, 77, 125, 141
AluI	AGCT	4 cut(s)	41, 77, 125, 141
Alw21I	GWGCWC	1 cut(s)	135
AlwI	GGATC	1 cut(s)	139
ApeKI	GCWGC	2 cut(s)	74, 150
AspLEI	GCGC	1 cut(s)	74
AsuC2I	CCSGG	1 cut(s)	172
AsuHPI	GGTGA	1 cut(s)	49
BauI	CACGAG	1 cut(s)	134
Bbv12I	GWGCWC	1 cut(s)	135
BbvI	GCAGC	2 cut(s)	86, 137
BccI	CCATC	2 cut(s)	19, 110
BcnI	CCSGG	1 cut(s)	172
BisI	GCNGC	2 cut(s)	75, 151
BlsI	GCNGC	2 cut(s)	76, 152
Bme1390I	CCNGG	1 cut(s)	172
BmiI	GGNNCC	1 cut(s)	97
BmrFI	CCNGG	1 cut(s)	172
BpmI	CTGGAG	1 cut(s)	149
BpuMI	CCSGG	1 cut(s)	172
BsaHI	GRCGYC	2 cut(s)	90, 117
BsaJI	CCNNGG	1 cut(s)	181
Bsc4I	CCNNNNNNNGG	2 cut(s)	15, 127
BseDI	CCNNGG	1 cut(s)	181
BseLI	CCNNNNNNNGG	2 cut(s)	15, 127
BseXI	GCAGC	2 cut(s)	86, 137
BsiHKAI	GWGCWC	1 cut(s)	135
BsiSI	CCGG	1 cut(s)	172
BslI	CCNNNNNNNGG	2 cut(s)	15, 127
Bsp1286I	GDGCHC	1 cut(s)	135
Bsp143I	GATC	3 cut(s)	82, 144, 161
BspACI	CCGC	1 cut(s)	148
BspLI	GGNNCC	1 cut(s)	97
BspPI	GGATC	1 cut(s)	139
BssECI	CCNNGG	1 cut(s)	181
BssMI	GATC	3 cut(s)	82, 144, 161
BssNI	GRCGYC	2 cut(s)	90, 117
BssSI	CACGAG	1 cut(s)	134
Bst2BI	CACGAG	1 cut(s)	134
BstACI	GRCGYC	2 cut(s)	90, 117
BstC8I	GCNNGC	1 cut(s)	70
BstHHI	GCGC	1 cut(s)	74
BstKTI	GATC	3 cut(s)	85, 147, 164
BstMBI	GATC	3 cut(s)	82, 144, 161
BstMWI	GCNNNNNNNGC	2 cut(s)	74, 147
BstNSI	RCATGY	1 cut(s)	72
BstSCI	CCNGG	1 cut(s)	170
BstV1I	GCAGC	2 cut(s)	86, 137
Cac8I	GCNNGC	1 cut(s)	70
CfoI	GCGC	1 cut(s)	74
CseI	GACGC	1 cut(s)	79
CviAII	CATG	1 cut(s)	69
CviJI	RGCY	6 cut(s)	41, 77, 98, 125, 141, 178
CviKI_1	RGCY	6 cut(s)	41, 77, 98, 125, 141, 178
DpnI	GATC	3 cut(s)	84, 146, 163
DpnII	GATC	3 cut(s)	82, 144, 161
FaeI	CATG	1 cut(s)	72
FaiI	YATR	1 cut(s)	70
FatI	CATG	1 cut(s)	68
Fnu4HI	GCNGC	2 cut(s)	75, 151
Fsp4HI	GCNGC	2 cut(s)	75, 151
FspI	TGCGCA	1 cut(s)	73
GlaI	GCGC	1 cut(s)	73
GluI	GCNGC	2 cut(s)	75, 151
GsuI	CTGGAG	1 cut(s)	149
HapII	CCGG	1 cut(s)	172
HgaI	GACGC	1 cut(s)	79
HhaI	GCGC	1 cut(s)	74
Hin1I	GRCGYC	2 cut(s)	90, 117
Hin1II	CATG	1 cut(s)	72
Hin6I	GCGC	1 cut(s)	72
HinP1I	GCGC	1 cut(s)	72
HincII	GTYRAC	1 cut(s)	109
HindII	GTYRAC	1 cut(s)	109
HpaII	CCGG	1 cut(s)	172
HphI	GGTGA	1 cut(s)	49
Hpy166II	GTNNAC	1 cut(s)	109
Hpy188I	TCNGA	3 cut(s)	95, 115, 185
Hpy188III	TCNNGA	1 cut(s)	128
Hpy8I	GTNNAC	1 cut(s)	109
Hpy99I	CGWCG	2 cut(s)	95, 119
HpyAV	CCTTC	1 cut(s)	61
HpyCH4IV	ACGT	1 cut(s)	117
HpyCH4V	TGCA	1 cut(s)	68
HpyF10VI	GCNNNNNNNGC	2 cut(s)	74, 147
HpySE526I	ACGT	1 cut(s)	117
Hsp92I	GRCGYC	2 cut(s)	90, 117
Hsp92II	CATG	1 cut(s)	72
HspAI	GCGC	1 cut(s)	72
Kzo9I	GATC	3 cut(s)	82, 144, 161
LmnI	GCTCC	3 cut(s)	18, 95, 130
LpnPI	CCDG	2 cut(s)	113, 185
Lsp1109I	GCAGC	2 cut(s)	86, 137
MaeII	ACGT	1 cut(s)	117
MaeIII	GTNAC	1 cut(s)	32
MalI	GATC	3 cut(s)	84, 146, 163
MboI	GATC	3 cut(s)	82, 144, 161
MhlI	GDGCHC	1 cut(s)	135
MmeI	TCCRAC	2 cut(s)	73, 138
MnlI	CCTC	2 cut(s)	65, 191
MspA1I	CMGCKG	1 cut(s)	150
MspI	CCGG	1 cut(s)	172
MspR9I	CCNGG	1 cut(s)	172
MwoI	GCNNNNNNNGC	2 cut(s)	74, 147
NciI	CCSGG	1 cut(s)	172
NdeII	GATC	3 cut(s)	82, 144, 161
NlaIII	CATG	1 cut(s)	72
NlaIV	GGNNCC	1 cut(s)	97
NmeAIII	GCCGAG	1 cut(s)	66
NsbI	TGCGCA	1 cut(s)	73
NspI	RCATGY	1 cut(s)	72
PaeI	GCATGC	1 cut(s)	72
PcsI	WCGNNNNNNNCGW	1 cut(s)	111
PflMI	CCANNNNNTGG	1 cut(s)	127
PkrI	GCNGC	2 cut(s)	76, 152
PspN4I	GGNNCC	1 cut(s)	97
SatI	GCNGC	2 cut(s)	75, 151
Sau3AI	GATC	3 cut(s)	82, 144, 161
ScrFI	CCNGG	1 cut(s)	172
SduI	GDGCHC	1 cut(s)	135
SetI	ASST	6 cut(s)	43, 66, 79, 120, 127, 143
SphI	GCATGC	1 cut(s)	72
SsiI	CCGC	1 cut(s)	148
StyD4I	CCNGG	1 cut(s)	170
TaiI	ACGT	1 cut(s)	120
TseI	GCWGC	2 cut(s)	74, 150
Van91I	CCANNNNNTGG	1 cut(s)	127
XceI	RCATGY	1 cut(s)	72
ZraI	GACGTC	1 cut(s)	118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.