Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0020499

Physical Location & Seq

Genomic Coordinates Forward (+)

68682491 .. 68691926

Gene Structure 9436 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG486900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGGGGAGCAAGATGGGAAGTAACCAAGCTGTCATCTCCTTCCTCACCAACCTTGCATGCGCAGCTTTTGATCTCGGCGTCGGAGCCACCATCGTCAACTCCGACGTCCAAGCTCTGGAGCACGAGAGCTTGATCCGCTGCCAAGTGCGATCTCCTACCCGGAAGCCCCTTGGAAATCTCCAATCTCGAGATTTGTTATCAGGGAAATTGCTTCAGTTTTTTCGCTGTCTTGTGGGTTGTTGCTTTGGAGATTACAGCTCCTCGGTCAAATCACCAGCAGCCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0005773 GO:0005774 GO:0005886 GO:0006950 GO:0006970 GO:0006979 GO:0006996 GO:0007005 GO:0007275 GO:0008150 GO:0009505 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009791 GO:0009987 GO:0010033 GO:0010035 GO:0016020 GO:0016043 GO:0019866 GO:0022622 GO:0030312 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0048364 GO:0048519 GO:0048523 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051301 GO:0051302 GO:0051782 GO:0065007 GO:0070013 GO:0070469 GO:0071731 GO:0071840 GO:0071944 GO:0090696 GO:0097366 GO:0098588 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:0098805 GO:0099402 GO:1901698 GO:1901700 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Band_7

Protein Analysis

95

Amino Acids

10.13

Weight (kDa)

8.99

Isoelectric Point (pI)

43.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020499)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0108681 RchiOBHm_Chr2g0149741
rosa_samantha	Rh2BG486900 Rh2CG207900 Rh2DG211100 Rh4CG081900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	108
Acc16I	TGCGCA	1 cut(s)	61
AccB7I	CCANNNNNTGG	1 cut(s)	115
AciI	CCGC	1 cut(s)	136
AclWI	GGATC	1 cut(s)	127
AcuI	CTGAAG	1 cut(s)	197
AcyI	GRCGYC	2 cut(s)	78, 105
AfiI	CCNNNNNNNGG	1 cut(s)	115
AluBI	AGCT	5 cut(s)	29, 65, 113, 129, 258
AluI	AGCT	5 cut(s)	29, 65, 113, 129, 258
Alw21I	GWGCWC	1 cut(s)	123
AlwI	GGATC	1 cut(s)	127
Ama87I	CYCGRG	1 cut(s)	186
ApeKI	GCWGC	3 cut(s)	62, 138, 278
AspLEI	GCGC	1 cut(s)	62
AsuC2I	CCSGG	1 cut(s)	160
AsuHPI	GGTGA	2 cut(s)	37, 264
AvaI	CYCGRG	1 cut(s)	186
BauI	CACGAG	1 cut(s)	122
Bbv12I	GWGCWC	1 cut(s)	123
BbvI	GCAGC	2 cut(s)	74, 125
BccI	CCATC	2 cut(s)	7, 98
BcnI	CCSGG	1 cut(s)	160
BisI	GCNGC	3 cut(s)	63, 139, 279
BlsI	GCNGC	3 cut(s)	64, 140, 280
Bme1390I	CCNGG	1 cut(s)	160
BmeT110I	CYCGRG	1 cut(s)	186
BmiI	GGNNCC	1 cut(s)	85
BmrFI	CCNGG	1 cut(s)	160
BpmI	CTGGAG	1 cut(s)	137
BpuMI	CCSGG	1 cut(s)	160
BsaHI	GRCGYC	2 cut(s)	78, 105
BsaJI	CCNNGG	2 cut(s)	169, 261
Bsc4I	CCNNNNNNNGG	1 cut(s)	115
BseDI	CCNNGG	2 cut(s)	169, 261
BseLI	CCNNNNNNNGG	1 cut(s)	115
BseRI	GAGGAG	1 cut(s)	250
BseXI	GCAGC	2 cut(s)	74, 125
BsiHKAI	GWGCWC	1 cut(s)	123
BsiHKCI	CYCGRG	1 cut(s)	186
BsiSI	CCGG	1 cut(s)	160
BslI	CCNNNNNNNGG	1 cut(s)	115
BsoBI	CYCGRG	1 cut(s)	186
Bsp1286I	GDGCHC	1 cut(s)	123
Bsp143I	GATC	3 cut(s)	70, 132, 149
BspACI	CCGC	1 cut(s)	136
BspLI	GGNNCC	1 cut(s)	85
BspPI	GGATC	1 cut(s)	127
BssECI	CCNNGG	2 cut(s)	169, 261
BssMI	GATC	3 cut(s)	70, 132, 149
BssNI	GRCGYC	2 cut(s)	78, 105
BssSI	CACGAG	1 cut(s)	122
BssT1I	CCWWGG	1 cut(s)	169
Bst2BI	CACGAG	1 cut(s)	122
BstACI	GRCGYC	2 cut(s)	78, 105
BstC8I	GCNNGC	1 cut(s)	58
BstHHI	GCGC	1 cut(s)	62
BstKTI	GATC	3 cut(s)	73, 135, 152
BstMBI	GATC	3 cut(s)	70, 132, 149
BstMWI	GCNNNNNNNGC	2 cut(s)	62, 135
BstNSI	RCATGY	1 cut(s)	60
BstSCI	CCNGG	1 cut(s)	158
BstV1I	GCAGC	2 cut(s)	74, 125
Cac8I	GCNNGC	1 cut(s)	58
CfoI	GCGC	1 cut(s)	62
CseI	GACGC	1 cut(s)	67
CviAII	CATG	1 cut(s)	57
CviJI	RGCY	8 cut(s)	29, 65, 86, 113, 129, 166, 258, 281
CviKI_1	RGCY	8 cut(s)	29, 65, 86, 113, 129, 166, 258, 281
DpnI	GATC	3 cut(s)	72, 134, 151
DpnII	GATC	3 cut(s)	70, 132, 149
Eco130I	CCWWGG	1 cut(s)	169
Eco57I	CTGAAG	1 cut(s)	197
Eco88I	CYCGRG	1 cut(s)	186
EcoT14I	CCWWGG	1 cut(s)	169
ErhI	CCWWGG	1 cut(s)	169
FaeI	CATG	1 cut(s)	60
FaiI	YATR	1 cut(s)	58
FatI	CATG	1 cut(s)	56
Fnu4HI	GCNGC	3 cut(s)	63, 139, 279
Fsp4HI	GCNGC	3 cut(s)	63, 139, 279
FspI	TGCGCA	1 cut(s)	61
GlaI	GCGC	1 cut(s)	61
GluI	GCNGC	3 cut(s)	63, 139, 279
GsuI	CTGGAG	1 cut(s)	137
HapII	CCGG	1 cut(s)	160
HgaI	GACGC	1 cut(s)	67
HhaI	GCGC	1 cut(s)	62
Hin1I	GRCGYC	2 cut(s)	78, 105
Hin1II	CATG	1 cut(s)	60
Hin6I	GCGC	1 cut(s)	60
HinP1I	GCGC	1 cut(s)	60
HincII	GTYRAC	1 cut(s)	97
HindII	GTYRAC	1 cut(s)	97
HpaII	CCGG	1 cut(s)	160
HphI	GGTGA	2 cut(s)	37, 264
Hpy166II	GTNNAC	1 cut(s)	97
Hpy188I	TCNGA	2 cut(s)	83, 103
Hpy188III	TCNNGA	3 cut(s)	116, 186, 188
Hpy8I	GTNNAC	1 cut(s)	97
Hpy99I	CGWCG	2 cut(s)	83, 107
HpyAV	CCTTC	1 cut(s)	49
HpyCH4IV	ACGT	1 cut(s)	105
HpyCH4V	TGCA	1 cut(s)	56
HpyF10VI	GCNNNNNNNGC	2 cut(s)	62, 135
HpySE526I	ACGT	1 cut(s)	105
Hsp92I	GRCGYC	2 cut(s)	78, 105
Hsp92II	CATG	1 cut(s)	60
HspAI	GCGC	1 cut(s)	60
Kzo9I	GATC	3 cut(s)	70, 132, 149
LmnI	GCTCC	4 cut(s)	6, 83, 118, 263
LpnPI	CCDG	3 cut(s)	101, 173, 186
Lsp1109I	GCAGC	2 cut(s)	74, 125
MaeII	ACGT	1 cut(s)	105
MaeIII	GTNAC	1 cut(s)	20
MalI	GATC	3 cut(s)	72, 134, 151
MboI	GATC	3 cut(s)	70, 132, 149
MhlI	GDGCHC	1 cut(s)	123
MluCI	AATT	1 cut(s)	206
MmeI	TCCRAC	2 cut(s)	61, 126
MnlI	CCTC	2 cut(s)	53, 271
MspA1I	CMGCKG	1 cut(s)	138
MspI	CCGG	1 cut(s)	160
MspR9I	CCNGG	1 cut(s)	160
MwoI	GCNNNNNNNGC	2 cut(s)	62, 135
NciI	CCSGG	1 cut(s)	160
NdeII	GATC	3 cut(s)	70, 132, 149
NlaIII	CATG	1 cut(s)	60
NlaIV	GGNNCC	1 cut(s)	85
NmeAIII	GCCGAG	1 cut(s)	54
NsbI	TGCGCA	1 cut(s)	61
NspI	RCATGY	1 cut(s)	60
PaeI	GCATGC	1 cut(s)	60
PaeR7I	CTCGAG	1 cut(s)	186
PcsI	WCGNNNNNNNCGW	1 cut(s)	99
PflMI	CCANNNNNTGG	1 cut(s)	115
PkrI	GCNGC	3 cut(s)	64, 140, 280
PspN4I	GGNNCC	1 cut(s)	85
SatI	GCNGC	3 cut(s)	63, 139, 279
Sau3AI	GATC	3 cut(s)	70, 132, 149
ScrFI	CCNGG	1 cut(s)	160
SduI	GDGCHC	1 cut(s)	123
SetI	ASST	7 cut(s)	31, 54, 67, 108, 115, 131, 260
Sfr274I	CTCGAG	1 cut(s)	186
SlaI	CTCGAG	1 cut(s)	186
SmlI	CTYRAG	1 cut(s)	186
SmoI	CTYRAG	1 cut(s)	186
SphI	GCATGC	1 cut(s)	60
Sse9I	AATT	1 cut(s)	206
SsiI	CCGC	1 cut(s)	136
StyD4I	CCNGG	1 cut(s)	158
StyI	CCWWGG	1 cut(s)	169
TaiI	ACGT	1 cut(s)	108
TaqI	TCGA	1 cut(s)	187
TaqII	GACCGA	1 cut(s)	253
TasI	AATT	1 cut(s)	206
TseI	GCWGC	3 cut(s)	62, 138, 278
Van91I	CCANNNNNTGG	1 cut(s)	115
XceI	RCATGY	1 cut(s)	60
XhoI	CTCGAG	1 cut(s)	186
ZraI	GACGTC	1 cut(s)	106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.