RchiOBHm_Chr2g0112131

Trafficking protein particle complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0022674
Physical Location & Seq
Forward (+)
23954307 .. 23954567
261 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 261 bp
ATGACCAACATTCTTTCTGTTTATCTTTTGTTGCAGGTTTATAATGCAGCAACAATCTTTTGCACGAAGATTTGGTGTATTTTCAGTGAGCCTGGTACGCAGCACATGGAAGGTCTCTTAAAACACATCTACGAGCTGTACATTGATTATGTCCTGAAGAACCCCTTCTATGAGATGGAGGTTCCTATCCGGTGCGAGCTCTTTGATATAAACCTAACACAGGCAATAGAAAAGGATCGTGTTGCCTTGTTGGCCCGATAA

Protein Analysis

86

Amino Acids

10.13

Weight (kDa)

5.19

Isoelectric Point (pI)

35.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sybindin PF04099 22 - 78 1.2e-17 Sybindin-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0022674)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0112131 RchiOBHm_Chr4g0392831 RchiOBHm_Chr4g0436621
rosa_multiflora Rmu_sc0001294.1_g000022

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 42
Acc36I ACCTGC 1 cut(s) 25
AclWI GGATC 1 cut(s) 243
AcuI CTGAAG 1 cut(s) 176
AfaI GTAC 2 cut(s) 97, 140
AfiI CCNNNNNNNGG 1 cut(s) 220
AjnI CCWGG 1 cut(s) 91
AluBI AGCT 2 cut(s) 136, 199
AluI AGCT 2 cut(s) 136, 199
Alw21I GWGCWC 1 cut(s) 201
Alw26I GTCTC 1 cut(s) 119
AlwI GGATC 1 cut(s) 243
AoxI GGCC 1 cut(s) 252
ApeKI GCWGC 2 cut(s) 47, 100
Asp700I GAANNNNTTC 1 cut(s) 164
AspS9I GGNCC 1 cut(s) 253
BanII GRGCYC 1 cut(s) 201
Bbv12I GWGCWC 1 cut(s) 201
BbvI GCAGC 2 cut(s) 59, 112
BccI CCATC 1 cut(s) 169
BciT130I CCWGG 1 cut(s) 93
BcoDI GTCTC 1 cut(s) 119
BfuAI ACCTGC 1 cut(s) 25
BglI GCCNNNNNGGC 1 cut(s) 251
BisI GCNGC 2 cut(s) 48, 101
BlsI GCNGC 2 cut(s) 49, 102
Bme1390I CCNGG 1 cut(s) 93
BmgT120I GGNCC 1 cut(s) 253
BmiI GGNNCC 1 cut(s) 183
BmrFI CCNGG 1 cut(s) 93
BsaI GGTCTC 1 cut(s) 119
BsaWI WCCGGW 1 cut(s) 189
Bsc4I CCNNNNNNNGG 1 cut(s) 220
BseBI CCWGG 1 cut(s) 93
BseLI CCNNNNNNNGG 1 cut(s) 220
BseXI GCAGC 2 cut(s) 59, 112
BshFI GGCC 1 cut(s) 254
BsiHKAI GWGCWC 1 cut(s) 201
BsiSI CCGG 1 cut(s) 190
BslI CCNNNNNNNGG 1 cut(s) 220
BsmAI GTCTC 1 cut(s) 119
BsnI GGCC 1 cut(s) 254
Bso31I GGTCTC 1 cut(s) 119
Bsp1286I GDGCHC 1 cut(s) 201
Bsp1407I TGTACA 1 cut(s) 138
Bsp143I GATC 1 cut(s) 235
BspANI GGCC 1 cut(s) 254
BspLI GGNNCC 1 cut(s) 183
BspMI ACCTGC 1 cut(s) 25
BspPI GGATC 1 cut(s) 243
BspTNI GGTCTC 1 cut(s) 119
BsrGI TGTACA 1 cut(s) 138
BssMI GATC 1 cut(s) 235
Bst2UI CCWGG 1 cut(s) 93
BstAUI TGTACA 1 cut(s) 138
BstC8I GCNNGC 1 cut(s) 197
BstENI CCTNNNNNAGG 1 cut(s) 218
BstKTI GATC 1 cut(s) 238
BstMAI GTCTC 1 cut(s) 119
BstMBI GATC 1 cut(s) 235
BstMWI GCNNNNNNNGC 2 cut(s) 97, 251
BstNI CCWGG 1 cut(s) 93
BstSCI CCNGG 1 cut(s) 91
BstV1I GCAGC 2 cut(s) 59, 112
BsuRI GGCC 1 cut(s) 254
BtsIMutI CAGTG 1 cut(s) 91
BveI ACCTGC 1 cut(s) 25
Cac8I GCNNGC 1 cut(s) 197
Cfr13I GGNCC 1 cut(s) 253
Csp6I GTAC 2 cut(s) 96, 139
CviAII CATG 1 cut(s) 106
CviJI RGCY 4 cut(s) 91, 136, 199, 254
CviKI_1 RGCY 4 cut(s) 91, 136, 199, 254
CviQI GTAC 2 cut(s) 96, 139
DpnI GATC 1 cut(s) 237
DpnII GATC 1 cut(s) 235
Ecl136II GAGCTC 1 cut(s) 199
Eco24I GRGCYC 1 cut(s) 201
Eco31I GGTCTC 1 cut(s) 119
Eco53kI GAGCTC 1 cut(s) 199
Eco57I CTGAAG 1 cut(s) 176
EcoICRI GAGCTC 1 cut(s) 199
EcoNI CCTNNNNNAGG 1 cut(s) 218
EcoRII CCWGG 1 cut(s) 91
EcoT38I GRGCYC 1 cut(s) 201
FaeI CATG 1 cut(s) 109
FaiI YATR 5 cut(s) 42, 107, 150, 171, 209
FalI AAGNNNNNCTT 2 cut(s) 149, 181
FatI CATG 1 cut(s) 105
Fnu4HI GCNGC 2 cut(s) 48, 101
FriOI GRGCYC 1 cut(s) 201
Fsp4HI GCNGC 2 cut(s) 48, 101
GluI GCNGC 2 cut(s) 48, 101
HaeIII GGCC 1 cut(s) 254
HapII CCGG 1 cut(s) 190
Hin1II CATG 1 cut(s) 109
HpaII CCGG 1 cut(s) 190
Hpy188III TCNNGA 1 cut(s) 154
HpyAV CCTTC 2 cut(s) 104, 175
HpyCH4V TGCA 3 cut(s) 34, 47, 63
HpyF10VI GCNNNNNNNGC 2 cut(s) 97, 251
Hsp92II CATG 1 cut(s) 109
Kzo9I GATC 1 cut(s) 235
LpnPI CCDG 6 cut(s) 20, 78, 105, 167, 203, 206
Lsp1109I GCAGC 2 cut(s) 59, 112
MalI GATC 1 cut(s) 237
MboI GATC 1 cut(s) 235
MboII GAAGA 2 cut(s) 79, 169
MhlI GDGCHC 1 cut(s) 201
MnlI CCTC 1 cut(s) 172
MroXI GAANNNNTTC 1 cut(s) 164
MseI TTAA 1 cut(s) 119
MspI CCGG 1 cut(s) 190
MspR9I CCNGG 1 cut(s) 93
MvaI CCWGG 1 cut(s) 93
MwoI GCNNNNNNNGC 2 cut(s) 97, 251
NdeII GATC 1 cut(s) 235
NlaIII CATG 1 cut(s) 109
NlaIV GGNNCC 1 cut(s) 183
PdmI GAANNNNTTC 1 cut(s) 164
PkrI GCNGC 2 cut(s) 49, 102
PsiI TTATAA 1 cut(s) 42
Psp124BI GAGCTC 1 cut(s) 201
Psp6I CCWGG 1 cut(s) 91
PspGI CCWGG 1 cut(s) 91
PspN4I GGNNCC 1 cut(s) 183
PspPI GGNCC 1 cut(s) 253
RsaI GTAC 2 cut(s) 97, 140
RsaNI GTAC 2 cut(s) 96, 139
SacI GAGCTC 1 cut(s) 201
SaqAI TTAA 1 cut(s) 119
SatI GCNGC 2 cut(s) 48, 101
Sau3AI GATC 1 cut(s) 235
Sau96I GGNCC 1 cut(s) 253
ScrFI CCNGG 1 cut(s) 93
SduI GDGCHC 1 cut(s) 201
SetI ASST 6 cut(s) 39, 115, 138, 183, 201, 216
SstI GAGCTC 1 cut(s) 201
StyD4I CCNGG 1 cut(s) 91
TatI WGTACW 1 cut(s) 138
Tru1I TTAA 1 cut(s) 119
Tru9I TTAA 1 cut(s) 119
TscAI CASTG 1 cut(s) 91
TseI GCWGC 2 cut(s) 47, 100
TspRI CASTG 1 cut(s) 91
XagI CCTNNNNNAGG 1 cut(s) 218
XmnI GAANNNNTTC 1 cut(s) 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.