RchiOBHm_Chr4g0392831

Trafficking protein particle complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0022674
Physical Location & Seq
Forward (+)
8304284 .. 8304547
264 bp
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UTR
Exon/CDS
Intron
PRQ36549

Sequence Viewer

Length: 264 bp
ATGACCAACATTCTTTCTGTTTATCTTTTGTTGCAGGTTTATAATGCAGCAACAACCATCTTTTGCACAAAGACTTGGTGTATTTTCAGTGAGCCTGGTACGCAGCACATGGAAGGTCTCTTGAAACACATCTATGAGCTGTACACTGATTATGTCCTGAAGAACCCTTTCTATGAGATGGAGATGCCTATCCGGTGCGAGCTCTTTGATATGAACCTAACACAGGCAATACAAAAGGATCGTGTTGCCTTGTTGGCCCGATAA

Protein Analysis

87

Amino Acids

10.26

Weight (kDa)

5.53

Isoelectric Point (pI)

31.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sybindin PF04099 27 - 79 7e-19 Sybindin-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0022674)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0112131 RchiOBHm_Chr4g0392831 RchiOBHm_Chr4g0436621
rosa_multiflora Rmu_sc0001294.1_g000022

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 42
Acc36I ACCTGC 1 cut(s) 25
AclWI GGATC 1 cut(s) 246
AcuI CTGAAG 1 cut(s) 179
AfaI GTAC 2 cut(s) 100, 143
AfiI CCNNNNNNNGG 1 cut(s) 223
AgsI TTSAA 1 cut(s) 124
AjnI CCWGG 1 cut(s) 94
AluBI AGCT 2 cut(s) 139, 202
AluI AGCT 2 cut(s) 139, 202
Alw21I GWGCWC 1 cut(s) 204
Alw26I GTCTC 1 cut(s) 122
AlwI GGATC 1 cut(s) 246
AoxI GGCC 1 cut(s) 255
ApeKI GCWGC 2 cut(s) 47, 103
Asp700I GAANNNNTTC 1 cut(s) 167
AspS9I GGNCC 1 cut(s) 256
BanII GRGCYC 1 cut(s) 204
Bbv12I GWGCWC 1 cut(s) 204
BbvI GCAGC 2 cut(s) 59, 115
BccI CCATC 2 cut(s) 65, 172
BciT130I CCWGG 1 cut(s) 96
BcoDI GTCTC 1 cut(s) 122
BfuAI ACCTGC 1 cut(s) 25
BglI GCCNNNNNGGC 1 cut(s) 254
BisI GCNGC 2 cut(s) 48, 104
BlsI GCNGC 2 cut(s) 49, 105
Bme1390I CCNGG 1 cut(s) 96
BmgT120I GGNCC 1 cut(s) 256
BmrFI CCNGG 1 cut(s) 96
BmsI GCATC 1 cut(s) 174
BsaBI GATNNNNATC 1 cut(s) 188
BsaI GGTCTC 1 cut(s) 122
BsaWI WCCGGW 1 cut(s) 192
Bsc4I CCNNNNNNNGG 1 cut(s) 223
Bse8I GATNNNNATC 1 cut(s) 188
BseBI CCWGG 1 cut(s) 96
BseJI GATNNNNATC 1 cut(s) 188
BseLI CCNNNNNNNGG 1 cut(s) 223
BseXI GCAGC 2 cut(s) 59, 115
BshFI GGCC 1 cut(s) 257
BsiHKAI GWGCWC 1 cut(s) 204
BsiSI CCGG 1 cut(s) 193
BslI CCNNNNNNNGG 1 cut(s) 223
BsmAI GTCTC 1 cut(s) 122
BsnI GGCC 1 cut(s) 257
Bso31I GGTCTC 1 cut(s) 122
Bsp1286I GDGCHC 1 cut(s) 204
Bsp1407I TGTACA 1 cut(s) 141
Bsp143I GATC 1 cut(s) 238
BspANI GGCC 1 cut(s) 257
BspMI ACCTGC 1 cut(s) 25
BspPI GGATC 1 cut(s) 246
BspTNI GGTCTC 1 cut(s) 122
BsrGI TGTACA 1 cut(s) 141
BssMI GATC 1 cut(s) 238
Bst2UI CCWGG 1 cut(s) 96
BstAUI TGTACA 1 cut(s) 141
BstC8I GCNNGC 1 cut(s) 200
BstENI CCTNNNNNAGG 1 cut(s) 221
BstKTI GATC 1 cut(s) 241
BstMAI GTCTC 1 cut(s) 122
BstMBI GATC 1 cut(s) 238
BstMWI GCNNNNNNNGC 2 cut(s) 100, 254
BstNI CCWGG 1 cut(s) 96
BstSCI CCNGG 1 cut(s) 94
BstV1I GCAGC 2 cut(s) 59, 115
BsuRI GGCC 1 cut(s) 257
BtsIMutI CAGTG 2 cut(s) 94, 144
BveI ACCTGC 1 cut(s) 25
Cac8I GCNNGC 1 cut(s) 200
Cfr13I GGNCC 1 cut(s) 256
Csp6I GTAC 2 cut(s) 99, 142
CviAII CATG 1 cut(s) 109
CviJI RGCY 4 cut(s) 94, 139, 202, 257
CviKI_1 RGCY 4 cut(s) 94, 139, 202, 257
CviQI GTAC 2 cut(s) 99, 142
DpnI GATC 1 cut(s) 240
DpnII GATC 1 cut(s) 238
Ecl136II GAGCTC 1 cut(s) 202
Eco24I GRGCYC 1 cut(s) 204
Eco31I GGTCTC 1 cut(s) 122
Eco53kI GAGCTC 1 cut(s) 202
Eco57I CTGAAG 1 cut(s) 179
EcoICRI GAGCTC 1 cut(s) 202
EcoNI CCTNNNNNAGG 1 cut(s) 221
EcoRII CCWGG 1 cut(s) 94
EcoT38I GRGCYC 1 cut(s) 204
FaeI CATG 1 cut(s) 112
FaiI YATR 6 cut(s) 42, 110, 135, 153, 174, 212
FatI CATG 1 cut(s) 108
Fnu4HI GCNGC 2 cut(s) 48, 104
FriOI GRGCYC 1 cut(s) 204
Fsp4HI GCNGC 2 cut(s) 48, 104
GluI GCNGC 2 cut(s) 48, 104
HaeIII GGCC 1 cut(s) 257
HapII CCGG 1 cut(s) 193
Hin1II CATG 1 cut(s) 112
HpaII CCGG 1 cut(s) 193
Hpy166II GTNNAC 1 cut(s) 144
Hpy188III TCNNGA 2 cut(s) 121, 157
Hpy8I GTNNAC 1 cut(s) 144
HpyAV CCTTC 1 cut(s) 107
HpyCH4V TGCA 3 cut(s) 34, 47, 66
HpyF10VI GCNNNNNNNGC 2 cut(s) 100, 254
Hsp92II CATG 1 cut(s) 112
Kzo9I GATC 1 cut(s) 238
LpnPI CCDG 6 cut(s) 20, 81, 108, 170, 206, 209
Lsp1109I GCAGC 2 cut(s) 59, 115
LweI GCATC 1 cut(s) 174
MalI GATC 1 cut(s) 240
MboI GATC 1 cut(s) 238
MboII GAAGA 1 cut(s) 172
MhlI GDGCHC 1 cut(s) 204
MroXI GAANNNNTTC 1 cut(s) 167
MslI CAYNNNNRTG 1 cut(s) 132
MspI CCGG 1 cut(s) 193
MspR9I CCNGG 1 cut(s) 96
MvaI CCWGG 1 cut(s) 96
MwoI GCNNNNNNNGC 2 cut(s) 100, 254
NdeII GATC 1 cut(s) 238
NlaIII CATG 1 cut(s) 112
PdmI GAANNNNTTC 1 cut(s) 167
PkrI GCNGC 2 cut(s) 49, 105
PsiI TTATAA 1 cut(s) 42
Psp124BI GAGCTC 1 cut(s) 204
Psp6I CCWGG 1 cut(s) 94
PspGI CCWGG 1 cut(s) 94
PspPI GGNCC 1 cut(s) 256
RsaI GTAC 2 cut(s) 100, 143
RsaNI GTAC 2 cut(s) 99, 142
RseI CAYNNNNRTG 1 cut(s) 132
SacI GAGCTC 1 cut(s) 204
SatI GCNGC 2 cut(s) 48, 104
Sau3AI GATC 1 cut(s) 238
Sau96I GGNCC 1 cut(s) 256
ScrFI CCNGG 1 cut(s) 96
SduI GDGCHC 1 cut(s) 204
SetI ASST 5 cut(s) 39, 118, 141, 204, 219
SfaNI GCATC 1 cut(s) 174
SmiMI CAYNNNNRTG 1 cut(s) 132
SstI GAGCTC 1 cut(s) 204
StyD4I CCNGG 1 cut(s) 94
TatI WGTACW 1 cut(s) 141
TscAI CASTG 2 cut(s) 94, 151
TseI GCWGC 2 cut(s) 47, 103
TspDTI ATGAA 1 cut(s) 227
TspRI CASTG 2 cut(s) 94, 151
XagI CCTNNNNNAGG 1 cut(s) 221
XmnI GAANNNNTTC 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.