Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0022674

Physical Location & Seq

Genomic Coordinates Forward (+)

59892013 .. 59892276

Gene Structure 264 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ40494

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGACCAACATTCTTTCTGTTTATCTCTTGTTGCAAGTTTATAATGCAACAACAACAATCTTTTGCACAAAGACTTGGTGTATTTTCAGTGAGCCTGGTAGGCAGCACATGGAAGGTCTCTTGAAACACATCTATGAGCTGTACACTGATTATGTCCTGAAGAACCCCTTCTATGAGATTGAGATGCCTACCCAGTGCGAGCTCTTTGATATGAACCTAACACAGGCAATACAAAAGGATTGTGTTGCCTTGTTGGCCCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005085 GO:0005088 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0006810 GO:0006888 GO:0008150 GO:0016192 GO:0017016 GO:0017112 GO:0017137 GO:0019899 GO:0030008 GO:0031267 GO:0032991 GO:0044424 GO:0044464 GO:0046907 GO:0048193 GO:0051020 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0065007 GO:0065009 GO:0098772 GO:0099023

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sybindin

Protein Analysis

87

Amino Acids

10.23

Weight (kDa)

5.14

Isoelectric Point (pI)

41.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sybindin	PF04099	27 - 79	2.5e-17	Sybindin-like family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022674)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0112131 RchiOBHm_Chr4g0392831 RchiOBHm_Chr4g0436621
rosa_multiflora	Rmu_sc0001294.1_g000022

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	42
AcuI	CTGAAG	1 cut(s)	179
AfaI	GTAC	1 cut(s)	143
AfiI	CCNNNNNNNGG	1 cut(s)	223
AgsI	TTSAA	1 cut(s)	124
AjnI	CCWGG	1 cut(s)	94
AluBI	AGCT	2 cut(s)	139, 202
AluI	AGCT	2 cut(s)	139, 202
Alw21I	GWGCWC	1 cut(s)	204
Alw26I	GTCTC	1 cut(s)	122
AoxI	GGCC	1 cut(s)	255
ApeKI	GCWGC	1 cut(s)	103
Asp700I	GAANNNNTTC	1 cut(s)	167
AspS9I	GGNCC	1 cut(s)	256
BanII	GRGCYC	1 cut(s)	204
Bbv12I	GWGCWC	1 cut(s)	204
BbvI	GCAGC	1 cut(s)	115
BciT130I	CCWGG	1 cut(s)	96
BcoDI	GTCTC	1 cut(s)	122
BglI	GCCNNNNNGGC	2 cut(s)	100, 254
BisI	GCNGC	1 cut(s)	104
BlsI	GCNGC	1 cut(s)	105
Bme1390I	CCNGG	1 cut(s)	96
BmgT120I	GGNCC	1 cut(s)	256
BmrFI	CCNGG	1 cut(s)	96
BmrI	ACTGGG	1 cut(s)	187
BmsI	GCATC	1 cut(s)	174
BmuI	ACTGGG	1 cut(s)	187
BsaI	GGTCTC	1 cut(s)	122
Bsc4I	CCNNNNNNNGG	1 cut(s)	223
Bse1I	ACTGG	1 cut(s)	193
BseBI	CCWGG	1 cut(s)	96
BseLI	CCNNNNNNNGG	1 cut(s)	223
BseNI	ACTGG	1 cut(s)	193
BseXI	GCAGC	1 cut(s)	115
BshFI	GGCC	1 cut(s)	257
BsiHKAI	GWGCWC	1 cut(s)	204
BslI	CCNNNNNNNGG	1 cut(s)	223
BsmAI	GTCTC	1 cut(s)	122
BsnI	GGCC	1 cut(s)	257
Bso31I	GGTCTC	1 cut(s)	122
Bsp1286I	GDGCHC	1 cut(s)	204
Bsp1407I	TGTACA	1 cut(s)	141
BspANI	GGCC	1 cut(s)	257
BspTNI	GGTCTC	1 cut(s)	122
BsrGI	TGTACA	1 cut(s)	141
BsrI	ACTGG	1 cut(s)	193
Bst2UI	CCWGG	1 cut(s)	96
BstAUI	TGTACA	1 cut(s)	141
BstC8I	GCNNGC	1 cut(s)	200
BstENI	CCTNNNNNAGG	1 cut(s)	221
BstMAI	GTCTC	1 cut(s)	122
BstMWI	GCNNNNNNNGC	2 cut(s)	100, 254
BstNI	CCWGG	1 cut(s)	96
BstSCI	CCNGG	1 cut(s)	94
BstV1I	GCAGC	1 cut(s)	115
BsuRI	GGCC	1 cut(s)	257
BtsIMutI	CAGTG	3 cut(s)	94, 144, 200
Cac8I	GCNNGC	1 cut(s)	200
Cfr13I	GGNCC	1 cut(s)	256
Csp6I	GTAC	1 cut(s)	142
CviAII	CATG	1 cut(s)	109
CviJI	RGCY	4 cut(s)	94, 139, 202, 257
CviKI_1	RGCY	4 cut(s)	94, 139, 202, 257
CviQI	GTAC	1 cut(s)	142
Ecl136II	GAGCTC	1 cut(s)	202
Eco24I	GRGCYC	1 cut(s)	204
Eco31I	GGTCTC	1 cut(s)	122
Eco53kI	GAGCTC	1 cut(s)	202
Eco57I	CTGAAG	1 cut(s)	179
EcoICRI	GAGCTC	1 cut(s)	202
EcoNI	CCTNNNNNAGG	1 cut(s)	221
EcoRII	CCWGG	1 cut(s)	94
EcoT38I	GRGCYC	1 cut(s)	204
FaeI	CATG	1 cut(s)	112
FaiI	YATR	6 cut(s)	42, 110, 135, 153, 174, 212
FalI	AAGNNNNNCTT	2 cut(s)	152, 184
FatI	CATG	1 cut(s)	108
Fnu4HI	GCNGC	1 cut(s)	104
FriOI	GRGCYC	1 cut(s)	204
Fsp4HI	GCNGC	1 cut(s)	104
GluI	GCNGC	1 cut(s)	104
HaeIII	GGCC	1 cut(s)	257
Hin1II	CATG	1 cut(s)	112
Hpy166II	GTNNAC	1 cut(s)	144
Hpy188III	TCNNGA	2 cut(s)	121, 157
Hpy8I	GTNNAC	1 cut(s)	144
HpyAV	CCTTC	2 cut(s)	107, 178
HpyCH4V	TGCA	3 cut(s)	34, 47, 66
HpyF10VI	GCNNNNNNNGC	2 cut(s)	100, 254
Hsp92II	CATG	1 cut(s)	112
LpnPI	CCDG	5 cut(s)	81, 108, 170, 206, 209
Lsp1109I	GCAGC	1 cut(s)	115
LweI	GCATC	1 cut(s)	174
MboII	GAAGA	1 cut(s)	172
MhlI	GDGCHC	1 cut(s)	204
MroXI	GAANNNNTTC	1 cut(s)	167
MslI	CAYNNNNRTG	1 cut(s)	132
MspR9I	CCNGG	1 cut(s)	96
MvaI	CCWGG	1 cut(s)	96
MwoI	GCNNNNNNNGC	2 cut(s)	100, 254
NlaIII	CATG	1 cut(s)	112
PdmI	GAANNNNTTC	1 cut(s)	167
PkrI	GCNGC	1 cut(s)	105
PsiI	TTATAA	1 cut(s)	42
Psp124BI	GAGCTC	1 cut(s)	204
Psp6I	CCWGG	1 cut(s)	94
PspGI	CCWGG	1 cut(s)	94
PspPI	GGNCC	1 cut(s)	256
RsaI	GTAC	1 cut(s)	143
RsaNI	GTAC	1 cut(s)	142
RseI	CAYNNNNRTG	1 cut(s)	132
SacI	GAGCTC	1 cut(s)	204
SatI	GCNGC	1 cut(s)	104
Sau96I	GGNCC	1 cut(s)	256
ScrFI	CCNGG	1 cut(s)	96
SduI	GDGCHC	1 cut(s)	204
SetI	ASST	4 cut(s)	118, 141, 204, 219
SfaNI	GCATC	1 cut(s)	174
SmiMI	CAYNNNNRTG	1 cut(s)	132
SstI	GAGCTC	1 cut(s)	204
StyD4I	CCNGG	1 cut(s)	94
TatI	WGTACW	1 cut(s)	141
TscAI	CASTG	3 cut(s)	94, 151, 200
TseI	GCWGC	1 cut(s)	103
TspDTI	ATGAA	1 cut(s)	227
TspRI	CASTG	3 cut(s)	94, 151, 200
XagI	CCTNNNNNAGG	1 cut(s)	221
XmnI	GAANNNNTTC	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.