Bifunctional 3-dehydroquinate dehydratase shikimate dehydrogenase
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr2g0118011 |
| rosa_multiflora | Rmu_co8338513.1_g000001 |
| rosa_roxburghii | Rroxscaffold_7G00201630 |
| rosa_samantha | Rh2AG272100 Rh2BG284100 Rh2DG280400 Rh2DG298300 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 242 |
| AclI | AACGTT | 1 cut(s) | 15 |
| AcoI | YGGCCR | 1 cut(s) | 93 |
| AfaI | GTAC | 1 cut(s) | 230 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 169 |
| AgsI | TTSAA | 3 cut(s) | 57, 169, 178 |
| Alw21I | GWGCWC | 1 cut(s) | 73 |
| AoxI | GGCC | 1 cut(s) | 93 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 52, 173 |
| AspS9I | GGNCC | 1 cut(s) | 160 |
| AvaII | GGWCC | 1 cut(s) | 160 |
| BalI | TGGCCA | 1 cut(s) | 95 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 221, 253 |
| BbsI | GAAGAC | 1 cut(s) | 166 |
| Bbv12I | GWGCWC | 1 cut(s) | 73 |
| BceAI | ACGGC | 1 cut(s) | 113 |
| Bme18I | GGWCC | 1 cut(s) | 160 |
| BmgT120I | GGNCC | 1 cut(s) | 160 |
| BpiI | GAAGAC | 1 cut(s) | 166 |
| BpuEI | CTTGAG | 1 cut(s) | 9 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 169 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 169 |
| Bsh1236I | CGCG | 1 cut(s) | 242 |
| BshFI | GGCC | 1 cut(s) | 95 |
| BsiHKAI | GWGCWC | 1 cut(s) | 73 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 169 |
| BsnI | GGCC | 1 cut(s) | 95 |
| Bsp1286I | GDGCHC | 1 cut(s) | 73 |
| Bsp143I | GATC | 1 cut(s) | 75 |
| Bsp68I | TCGCGA | 1 cut(s) | 242 |
| BspANI | GGCC | 1 cut(s) | 95 |
| BspFNI | CGCG | 1 cut(s) | 242 |
| BssMI | GATC | 1 cut(s) | 75 |
| Bst4CI | ACNGT | 1 cut(s) | 8 |
| Bst6I | CTCTTC | 1 cut(s) | 183 |
| BstFNI | CGCG | 1 cut(s) | 242 |
| BstKTI | GATC | 1 cut(s) | 78 |
| BstMBI | GATC | 1 cut(s) | 75 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 134 |
| BstUI | CGCG | 1 cut(s) | 242 |
| BstV2I | GAAGAC | 1 cut(s) | 166 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 103 |
| BsuRI | GGCC | 1 cut(s) | 95 |
| BtuMI | TCGCGA | 1 cut(s) | 242 |
| Cfr13I | GGNCC | 1 cut(s) | 160 |
| Csp6I | GTAC | 1 cut(s) | 229 |
| CviAII | CATG | 1 cut(s) | 79 |
| CviJI | RGCY | 5 cut(s) | 23, 83, 95, 122, 128 |
| CviKI_1 | RGCY | 5 cut(s) | 23, 83, 95, 122, 128 |
| CviQI | GTAC | 1 cut(s) | 229 |
| DpnI | GATC | 1 cut(s) | 77 |
| DpnII | GATC | 1 cut(s) | 75 |
| EaeI | YGGCCR | 1 cut(s) | 93 |
| Eam1104I | CTCTTC | 1 cut(s) | 183 |
| EarI | CTCTTC | 1 cut(s) | 183 |
| Eco32I | GATATC | 1 cut(s) | 112 |
| Eco47I | GGWCC | 1 cut(s) | 160 |
| EcoRV | GATATC | 1 cut(s) | 112 |
| FaeI | CATG | 1 cut(s) | 82 |
| FaiI | YATR | 5 cut(s) | 20, 80, 101, 251, 256 |
| FatI | CATG | 1 cut(s) | 78 |
| HaeIII | GGCC | 1 cut(s) | 95 |
| Hin1II | CATG | 1 cut(s) | 82 |
| HinfI | GANTC | 1 cut(s) | 196 |
| Hpy188I | TCNGA | 1 cut(s) | 75 |
| Hpy188III | TCNNGA | 1 cut(s) | 241 |
| HpyAV | CCTTC | 2 cut(s) | 71, 163 |
| HpyCH4III | ACNGT | 1 cut(s) | 8 |
| HpyCH4IV | ACGT | 1 cut(s) | 15 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 134 |
| HpySE526I | ACGT | 1 cut(s) | 15 |
| Hsp92II | CATG | 1 cut(s) | 82 |
| Kzo9I | GATC | 1 cut(s) | 75 |
| LmnI | GCTCC | 1 cut(s) | 76 |
| LpnPI | CCDG | 1 cut(s) | 103 |
| MaeII | ACGT | 1 cut(s) | 15 |
| MalI | GATC | 1 cut(s) | 77 |
| MboI | GATC | 1 cut(s) | 75 |
| MboII | GAAGA | 3 cut(s) | 166, 200, 205 |
| MhlI | GDGCHC | 1 cut(s) | 73 |
| MlsI | TGGCCA | 1 cut(s) | 95 |
| MluCI | AATT | 1 cut(s) | 178 |
| MluNI | TGGCCA | 1 cut(s) | 95 |
| MnlI | CCTC | 3 cut(s) | 26, 32, 237 |
| Mox20I | TGGCCA | 1 cut(s) | 95 |
| MroXI | GAANNNNTTC | 2 cut(s) | 52, 173 |
| MscI | TGGCCA | 1 cut(s) | 95 |
| Msp20I | TGGCCA | 1 cut(s) | 95 |
| MvnI | CGCG | 1 cut(s) | 242 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 134 |
| NdeII | GATC | 1 cut(s) | 75 |
| NlaIII | CATG | 1 cut(s) | 82 |
| NruI | TCGCGA | 1 cut(s) | 242 |
| PdmI | GAANNNNTTC | 2 cut(s) | 52, 173 |
| PfeI | GAWTC | 1 cut(s) | 196 |
| Psp1406I | AACGTT | 1 cut(s) | 15 |
| PspPI | GGNCC | 1 cut(s) | 160 |
| RruI | TCGCGA | 1 cut(s) | 242 |
| RsaI | GTAC | 1 cut(s) | 230 |
| RsaNI | GTAC | 1 cut(s) | 229 |
| Sau3AI | GATC | 1 cut(s) | 75 |
| Sau96I | GGNCC | 1 cut(s) | 160 |
| SduI | GDGCHC | 1 cut(s) | 73 |
| SetI | ASST | 5 cut(s) | 18, 37, 144, 174, 230 |
| SgeI | CNNG | 6 cut(s) | 38, 91, 130, 155, 253, 255 |
| SinI | GGWCC | 1 cut(s) | 160 |
| SmlI | CTYRAG | 1 cut(s) | 24 |
| SmoI | CTYRAG | 1 cut(s) | 24 |
| Sse9I | AATT | 1 cut(s) | 178 |
| TaaI | ACNGT | 1 cut(s) | 8 |
| TaiI | ACGT | 1 cut(s) | 18 |
| TasI | AATT | 1 cut(s) | 178 |
| TfiI | GAWTC | 1 cut(s) | 196 |
| TspDTI | ATGAA | 1 cut(s) | 201 |
| VpaK11BI | GGWCC | 1 cut(s) | 160 |
| XmnI | GAANNNNTTC | 2 cut(s) | 52, 173 |