Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0019885

Physical Location & Seq

Genomic Coordinates Forward (+)

49305675 .. 49305965

Gene Structure 291 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00201630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGAGGAAGAGTTCAACTCTAATTTGTGCTCCGATCATGGCCGAATCGGTGGCCAAGATGGTGGTGGAGATTGGCAGGGCAAAGGCCTCCGGTGCTGACCTTGTGGAGATTAGGCTGGACCATTTGAAGGTCTTCAATTGTAATCAAGATGTCAAGACCCTAATTGATCAATCCCCTTTGCCCACTCTTTTCACTTATAGACCAAAGTGGGAAGGTGGTCGGTATGATGGCGATGAAAAGAGCGGATCGGATGTGCTTCGACTAGCTATGGGTTGGGGGCGATTACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004764 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009423 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016053 GO:0016491 GO:0016614 GO:0016616 GO:0019632 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043650 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046417 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0055114 GO:0061458 GO:0071704 GO:1901576 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

DHquinase_I Shikimate_DH Shikimate_dh_N

Protein Analysis

96

Amino Acids

10.69

Weight (kDa)

8.66

Isoelectric Point (pI)

37.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DHquinase_I	PF01487	9 - 93	8e-18	Type I 3-dehydroquinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0019885)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0118011
rosa_multiflora	Rmu_co8338513.1_g000001
rosa_roxburghii	Rroxscaffold_7G00201630
rosa_samantha	Rh2AG272100 Rh2BG284100 Rh2DG280400 Rh2DG298300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	243
AciI	CCGC	1 cut(s)	243
AclWI	GGATC	1 cut(s)	253
AcoI	YGGCCR	2 cut(s)	39, 51
AfiI	CCNNNNNNNGG	1 cut(s)	127
AgsI	TTSAA	3 cut(s)	15, 127, 136
AluBI	AGCT	1 cut(s)	266
AluI	AGCT	1 cut(s)	266
Alw21I	GWGCWC	1 cut(s)	31
AlwI	GGATC	1 cut(s)	253
AoxI	GGCC	3 cut(s)	39, 51, 84
Asp700I	GAANNNNTTC	1 cut(s)	131
AspS9I	GGNCC	1 cut(s)	118
AvaII	GGWCC	1 cut(s)	118
BalI	TGGCCA	1 cut(s)	53
BbsI	GAAGAC	1 cut(s)	124
Bbv12I	GWGCWC	1 cut(s)	31
BccI	CCATC	2 cut(s)	52, 221
BclI	TGATCA	1 cut(s)	166
BfaI	CTAG	1 cut(s)	263
Bme18I	GGWCC	1 cut(s)	118
BmgT120I	GGNCC	1 cut(s)	118
BpiI	GAAGAC	1 cut(s)	124
BplI	GAGNNNNNCTC	1 cut(s)	33
BsaWI	WCCGGW	1 cut(s)	89
Bsc4I	CCNNNNNNNGG	1 cut(s)	127
BseGI	GGATG	1 cut(s)	256
BseLI	CCNNNNNNNGG	1 cut(s)	127
BshFI	GGCC	3 cut(s)	41, 53, 86
BsiHKAI	GWGCWC	1 cut(s)	31
BsiSI	CCGG	1 cut(s)	90
BslI	CCNNNNNNNGG	1 cut(s)	127
BsnI	GGCC	3 cut(s)	41, 53, 86
Bsp1286I	GDGCHC	1 cut(s)	31
Bsp143I	GATC	3 cut(s)	33, 166, 245
BspACI	CCGC	1 cut(s)	243
BspANI	GGCC	3 cut(s)	41, 53, 86
BspPI	GGATC	1 cut(s)	253
BsrBI	CCGCTC	1 cut(s)	243
BssMI	GATC	3 cut(s)	33, 166, 245
Bst6I	CTCTTC	1 cut(s)	2
BstF5I	GGATG	1 cut(s)	256
BstKTI	GATC	3 cut(s)	36, 169, 248
BstMBI	GATC	3 cut(s)	33, 166, 245
BstMWI	GCNNNNNNNGC	1 cut(s)	92
BstV2I	GAAGAC	1 cut(s)	124
BstXI	CCANNNNNNTGG	1 cut(s)	61
BsuRI	GGCC	3 cut(s)	41, 53, 86
BtgZI	GCGATG	1 cut(s)	246
BtsCI	GGATG	1 cut(s)	256
Cfr13I	GGNCC	1 cut(s)	118
CviAII	CATG	1 cut(s)	37
CviJI	RGCY	5 cut(s)	41, 53, 86, 115, 266
CviKI_1	RGCY	5 cut(s)	41, 53, 86, 115, 266
DpnI	GATC	3 cut(s)	35, 168, 247
DpnII	GATC	3 cut(s)	33, 166, 245
EaeI	YGGCCR	2 cut(s)	39, 51
Eam1104I	CTCTTC	1 cut(s)	2
EarI	CTCTTC	1 cut(s)	2
Eco147I	AGGCCT	1 cut(s)	86
Eco47I	GGWCC	1 cut(s)	118
FaeI	CATG	1 cut(s)	40
FaiI	YATR	4 cut(s)	38, 198, 225, 269
FatI	CATG	1 cut(s)	36
FbaI	TGATCA	1 cut(s)	166
FokI	GGATG	1 cut(s)	263
FspBI	CTAG	1 cut(s)	263
HaeIII	GGCC	3 cut(s)	41, 53, 86
HapII	CCGG	1 cut(s)	90
Hin1II	CATG	1 cut(s)	40
HinfI	GANTC	1 cut(s)	44
HpaII	CCGG	1 cut(s)	90
Hpy188I	TCNGA	2 cut(s)	33, 250
Hpy188III	TCNNGA	2 cut(s)	146, 154
HpyAV	CCTTC	2 cut(s)	121, 206
HpyF10VI	GCNNNNNNNGC	1 cut(s)	92
Hsp92II	CATG	1 cut(s)	40
Ksp22I	TGATCA	1 cut(s)	166
Kzo9I	GATC	3 cut(s)	33, 166, 245
LmnI	GCTCC	1 cut(s)	34
LpnPI	CCDG	3 cut(s)	61, 101, 103
MaeI	CTAG	1 cut(s)	263
MalI	GATC	3 cut(s)	35, 168, 247
MbiI	CCGCTC	1 cut(s)	243
MboI	GATC	3 cut(s)	33, 166, 245
MboII	GAAGA	2 cut(s)	19, 124
MfeI	CAATTG	1 cut(s)	136
MhlI	GDGCHC	1 cut(s)	31
MlsI	TGGCCA	1 cut(s)	53
MluCI	AATT	3 cut(s)	21, 136, 162
MluNI	TGGCCA	1 cut(s)	53
MnlI	CCTC	1 cut(s)	97
Mox20I	TGGCCA	1 cut(s)	53
MroXI	GAANNNNTTC	1 cut(s)	131
MscI	TGGCCA	1 cut(s)	53
Msp20I	TGGCCA	1 cut(s)	53
MspI	CCGG	1 cut(s)	90
MunI	CAATTG	1 cut(s)	136
MwoI	GCNNNNNNNGC	1 cut(s)	92
NdeII	GATC	3 cut(s)	33, 166, 245
NlaIII	CATG	1 cut(s)	40
PceI	AGGCCT	1 cut(s)	86
PdmI	GAANNNNTTC	1 cut(s)	131
PfeI	GAWTC	1 cut(s)	44
PspPI	GGNCC	1 cut(s)	118
Sau3AI	GATC	3 cut(s)	33, 166, 245
Sau96I	GGNCC	1 cut(s)	118
SduI	GDGCHC	1 cut(s)	31
SetI	ASST	4 cut(s)	102, 132, 217, 268
SgeI	CNNG	9 cut(s)	49, 67, 88, 102, 113, 128, 158, 166, 275
SinI	GGWCC	1 cut(s)	118
Sse9I	AATT	3 cut(s)	21, 136, 162
SseBI	AGGCCT	1 cut(s)	86
SsiI	CCGC	1 cut(s)	243
SspMI	CTAG	1 cut(s)	263
StuI	AGGCCT	1 cut(s)	86
TaqI	TCGA	1 cut(s)	259
TasI	AATT	3 cut(s)	21, 136, 162
TfiI	GAWTC	1 cut(s)	44
TspDTI	ATGAA	1 cut(s)	249
VpaK11BI	GGWCC	1 cut(s)	118
XcmI	CCANNNNNNNNNTGG	1 cut(s)	61
XmnI	GAANNNNTTC	1 cut(s)	131
XspI	CTAG	1 cut(s)	263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.