Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0024863

Physical Location & Seq

Genomic Coordinates Reverse (-)

31801130 .. 31802101

Gene Structure 972 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGCCAATACTTTCATGTAGAATTGTGATTGGATTATACGGTCAGGTTGTACCAAAAACTGTGTTATTGAGACGATACTTTTTAATGCCCGATTACTTACAACCTCAATTACAAACCATTGCACAGGCAAACTCTGTTAGTTGCAGTTTCTTGTCAAATGATCAAGAAAATTTCAGGGCATTGTGCACAGGTACTTGGGTCGGACCTGCGATATTTGATTACCAACATAACCTGTCCATGTTGTCATTATGCTTATTGAAACTTGCTTTAAATGCAGGAGAAAAAGGTAAAGTTGTTAATGGAAAACTACTCCAGTATAAGGGAACGCCATTTCATCATATCGTATCTGGGTACATGATTCGAGGCGGAGATATCATTCATGGTGATAGGAAGGGGTACGAATTGATATATGGTGGCACTTTTGCTGATGAGAATTTCAAAGTGAAACATTCACATGCAGGTACTGTTTCTATGGTGAATACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0005783 GO:0005794 GO:0005795 GO:0005802 GO:0005829 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031410 GO:0031982 GO:0031984 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0097708 GO:0098791 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

161

Amino Acids

17.88

Weight (kDa)

9.08

Isoelectric Point (pI)

30.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	55 - 161	8.8e-10	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0024863)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0119451
rosa_laevigata	RLG00000035627 RLG00000036277

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	214, 449
AciI	CCGC	1 cut(s)	366
AcsI	RAATTY	2 cut(s)	169, 433
AfaI	GTAC	5 cut(s)	51, 193, 353, 398, 463
AfiI	CCNNNNNNNGG	1 cut(s)	319
AgsI	TTSAA	2 cut(s)	259, 439
Alw21I	GWGCWC	1 cut(s)	188
Alw26I	GTCTC	1 cut(s)	64
Alw44I	GTGCAC	1 cut(s)	184
AlwNI	CAGNNNCTG	1 cut(s)	464
ApaLI	GTGCAC	1 cut(s)	184
ApoI	RAATTY	2 cut(s)	169, 433
AspS9I	GGNCC	1 cut(s)	203
AsuHPI	GGTGA	1 cut(s)	395
AvaII	GGWCC	1 cut(s)	203
BaeGI	GKGCMC	1 cut(s)	188
BaeI	ACNNNNGTAYC	2 cut(s)	183, 216
Bbv12I	GWGCWC	1 cut(s)	188
BclI	TGATCA	1 cut(s)	160
BcoDI	GTCTC	1 cut(s)	64
BfuAI	ACCTGC	2 cut(s)	214, 449
Bme18I	GGWCC	1 cut(s)	203
BmgT120I	GGNCC	1 cut(s)	203
BpmI	CTGGAG	1 cut(s)	296
Bsc4I	CCNNNNNNNGG	1 cut(s)	319
Bse1I	ACTGG	1 cut(s)	313
Bse3DI	GCAATG	1 cut(s)	117
BseLI	CCNNNNNNNGG	1 cut(s)	319
BseMI	GCAATG	1 cut(s)	117
BseNI	ACTGG	1 cut(s)	313
BseSI	GKGCMC	1 cut(s)	188
BsiHKAI	GWGCWC	1 cut(s)	188
BslI	CCNNNNNNNGG	1 cut(s)	319
BsmAI	GTCTC	1 cut(s)	64
BsmBI	CGTCTC	1 cut(s)	64
Bsp1286I	GDGCHC	1 cut(s)	188
Bsp143I	GATC	1 cut(s)	160
BspACI	CCGC	1 cut(s)	366
BspMI	ACCTGC	2 cut(s)	214, 449
BsrDI	GCAATG	1 cut(s)	117
BsrI	ACTGG	1 cut(s)	313
BssMI	GATC	1 cut(s)	160
Bst4CI	ACNGT	3 cut(s)	41, 61, 466
BstKTI	GATC	1 cut(s)	163
BstMAI	GTCTC	1 cut(s)	64
BstMBI	GATC	1 cut(s)	160
BstMWI	GCNNNNNNNGC	1 cut(s)	272
BstNSI	RCATGY	1 cut(s)	458
BstSLI	GKGCMC	1 cut(s)	188
BveI	ACCTGC	2 cut(s)	214, 449
CaiI	CAGNNNCTG	1 cut(s)	464
Cfr13I	GGNCC	1 cut(s)	203
Csp6I	GTAC	5 cut(s)	50, 192, 352, 397, 462
CviAII	CATG	6 cut(s)	15, 238, 355, 380, 455, 483
CviQI	GTAC	5 cut(s)	50, 192, 352, 397, 462
DpnI	GATC	1 cut(s)	162
DpnII	GATC	1 cut(s)	160
DraI	TTTAAA	1 cut(s)	270
EciI	GGCGGA	1 cut(s)	381
Eco32I	GATATC	1 cut(s)	373
Eco47I	GGWCC	1 cut(s)	203
EcoRV	GATATC	1 cut(s)	373
Esp3I	CGTCTC	1 cut(s)	64
FaeI	CATG	6 cut(s)	18, 241, 358, 383, 458, 486
FatI	CATG	6 cut(s)	14, 237, 354, 379, 454, 482
FbaI	TGATCA	1 cut(s)	160
GsuI	CTGGAG	1 cut(s)	296
Hin1II	CATG	6 cut(s)	18, 241, 358, 383, 458, 486
HinfI	GANTC	1 cut(s)	358
HphI	GGTGA	1 cut(s)	395
Hpy166II	GTNNAC	1 cut(s)	186
Hpy188I	TCNGA	1 cut(s)	203
Hpy188III	TCNNGA	1 cut(s)	164
Hpy8I	GTNNAC	1 cut(s)	186
HpyAV	CCTTC	1 cut(s)	385
HpyCH4III	ACNGT	3 cut(s)	41, 61, 466
HpyCH4V	TGCA	5 cut(s)	122, 144, 186, 275, 458
HpyF10VI	GCNNNNNNNGC	1 cut(s)	272
Hsp92II	CATG	6 cut(s)	18, 241, 358, 383, 458, 486
Ksp22I	TGATCA	1 cut(s)	160
Kzo9I	GATC	1 cut(s)	160
MalI	GATC	1 cut(s)	162
MboI	GATC	1 cut(s)	160
MhlI	GDGCHC	1 cut(s)	188
MluCI	AATT	5 cut(s)	21, 107, 169, 401, 433
MmeI	TCCRAC	1 cut(s)	181
MnlI	CCTC	2 cut(s)	114, 356
MseI	TTAA	3 cut(s)	83, 269, 297
MslI	CAYNNNNRTG	1 cut(s)	453
MwoI	GCNNNNNNNGC	1 cut(s)	272
NdeII	GATC	1 cut(s)	160
NlaIII	CATG	6 cut(s)	18, 241, 358, 383, 458, 486
NspI	RCATGY	1 cut(s)	458
PfeI	GAWTC	1 cut(s)	358
PspPI	GGNCC	1 cut(s)	203
PstNI	CAGNNNCTG	1 cut(s)	464
RsaI	GTAC	5 cut(s)	51, 193, 353, 398, 463
RsaNI	GTAC	5 cut(s)	50, 192, 352, 397, 462
RseI	CAYNNNNRTG	1 cut(s)	453
SaqAI	TTAA	3 cut(s)	83, 269, 297
Sau3AI	GATC	1 cut(s)	160
Sau96I	GGNCC	1 cut(s)	203
SduI	GDGCHC	1 cut(s)	188
SetI	ASST	7 cut(s)	48, 106, 193, 208, 234, 289, 463
SinI	GGWCC	1 cut(s)	203
SmiMI	CAYNNNNRTG	1 cut(s)	453
Sse9I	AATT	5 cut(s)	21, 107, 169, 401, 433
SsiI	CCGC	1 cut(s)	366
TaaI	ACNGT	3 cut(s)	41, 61, 466
TaqI	TCGA	1 cut(s)	361
TasI	AATT	5 cut(s)	21, 107, 169, 401, 433
TfiI	GAWTC	1 cut(s)	358
Tru1I	TTAA	3 cut(s)	83, 269, 297
Tru9I	TTAA	3 cut(s)	83, 269, 297
TspDTI	ATGAA	2 cut(s)	323, 368
VneI	GTGCAC	1 cut(s)	184
VpaK11BI	GGWCC	1 cut(s)	203
XapI	RAATTY	2 cut(s)	169, 433
XceI	RCATGY	1 cut(s)	458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.