Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0024863

Physical Location & Seq

Genomic Coordinates Reverse (-)

78319238 .. 78326235

Gene Structure 6998 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036277

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1260 bp

ATGATAACAGGCAAGATACACTTGAGACAAAAGGAGGAAGAGAAAGTAGAAGAAGTACCTGAAATAACCCATAGAGTATACCTGGATATTGATATTGAGGAACAGCGCTTAGGTAGAATTGTGATTGGATTATACGGTCAGGTTGTGCCAAAAACTTTTTTAATGCCCGATTACTTTCAACCTCAATTACAAACCATTGCACATGCAAACTCTGTTAGTTGCAGTTTCTTGTCAAATGATCAAGGGCATTGTGCACAGGTACTTGGGCCTGCGATATTTGATTACCAACAGAACCTGTTCATGTTGTCATTATGCTTATTGAAACTTGCTTTAAATGCAGGAGAAAAAGGTAAAGGTGTTAATGGAAAACCACTCCACTATAAGGGAACGCCATTTCATCGTATCGTATCTGGGTTCATGATTCAAGGCGGAGATATCATTCATGGTGATGGGAAGGGATATGAATCGAAATATGGTGGCACCTTTGCTGATGAGAATTTCAAAGTGAAGCATTCACATACAGGTACTGTTTCTATGGTGAATGTAGGACCTGATTCCAATGGCTCACAGTTCTTTATCACCACAATCAAGGTTGAGGCTGAAGTGTCAAAGTTGGAGCAGCTCAAGTCAAATGAGTTTCTCAATCTTGATGATATTGATAATGTTGGTGGTGGTGGTGGTGAGAATCATGAATTGTTAGTCACTGAAGTCGATAGAGTCGGAGATGTTTTGGACGCAGACTTCGCCGATCCGAATTCGATACTAAACTTGCCAATCGGATTCTATAACCGGAGCTCCAATTCGCCTCTCTCGATCGATCATACCTCCTTCTTGGTTCACTCTACATTTGAACTTGAACTTGGGTTTAGCGTCTTTTCATTGAAAACCGGTTCTTCGCGAGTGATTGAGAAGGGATATCCCTATCAAAGTTTACACCATAGTAGACAGGGGAGACTGCTGAATGGAGAGAAGGAAGTGCGAGAGATTCCACTACCGCCTCGTTTCAGTATGGAATCGGAAGATGTTTATTTAAGTGTCTTCAGAGAATGCCTATGTATGAGACGGTGGTTGCACTCGGGGTTCAGGAAGAAAGTTTATGATCTATTGCTGTTGAAAGATGCCGAAGACAGGTTGGTTCTGCTCAATTTTGATGAGGACACCTTTCGCAATATATCAATTCGTGGAGTTCTGGAAGTTGGTTATGGCGTGGTCTACTTGGAGAGCCTTGTTTCACCCAATTGCTTTGGCATCACTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0005783 GO:0005794 GO:0005795 GO:0005802 GO:0005829 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031410 GO:0031982 GO:0031984 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0097708 GO:0098791 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

420

Amino Acids

46.94

Weight (kDa)

5.48

Isoelectric Point (pI)

34.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	117 - 197	4.4e-19	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024863)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0119451
rosa_laevigata	RLG00000035627 RLG00000036277

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	479
AccI	GTMKAC	3 cut(s)	78, 943, 1212
AccII	CGCG	1 cut(s)	898
AciI	CCGC	2 cut(s)	429, 995
AclWI	GGATC	1 cut(s)	743
AcsI	RAATTY	2 cut(s)	496, 754
AcuI	CTGAAG	3 cut(s)	621, 726, 1024
AfaI	GTAC	3 cut(s)	57, 261, 526
AfeI	AGCGCT	1 cut(s)	107
AfiI	CCNNNNNNNGG	2 cut(s)	382, 1128
AgeI	ACCGGT	1 cut(s)	887
AgsI	TTSAA	8 cut(s)	179, 322, 425, 502, 851, 857, 883, 1114
AjnI	CCWGG	1 cut(s)	81
AjuI	GAANNNNNNNTTGG	2 cut(s)	843, 875
AluBI	AGCT	2 cut(s)	622, 795
AluI	AGCT	2 cut(s)	622, 795
Alw21I	GWGCWC	2 cut(s)	256, 797
Alw26I	GTCTC	3 cut(s)	19, 946, 1054
Alw44I	GTGCAC	1 cut(s)	252
AlwI	GGATC	1 cut(s)	743
AlwNI	CAGNNNCTG	2 cut(s)	295, 527
Ama87I	CYCGRG	1 cut(s)	1075
Aor51HI	AGCGCT	1 cut(s)	107
AoxI	GGCC	1 cut(s)	266
ApaLI	GTGCAC	1 cut(s)	252
ApeKI	GCWGC	1 cut(s)	619
ApoI	RAATTY	2 cut(s)	496, 754
ArsI	GACNNNNNNTTYG	2 cut(s)	725, 757
AsiGI	ACCGGT	1 cut(s)	887
Asp700I	GAANNNNTTC	1 cut(s)	296
AspLEI	GCGC	1 cut(s)	108
AspS9I	GGNCC	2 cut(s)	266, 548
AsuHPI	GGTGA	5 cut(s)	458, 550, 571, 692, 1224
AvaI	CYCGRG	1 cut(s)	1075
AvaII	GGWCC	1 cut(s)	548
BaeGI	GKGCMC	1 cut(s)	256
BanI	GGYRCC	1 cut(s)	479
BanII	GRGCYC	1 cut(s)	797
BbsI	GAAGAC	2 cut(s)	1030, 1131
Bbv12I	GWGCWC	2 cut(s)	256, 797
BbvI	GCAGC	1 cut(s)	631
BccI	CCATC	1 cut(s)	443
BciT130I	CCWGG	1 cut(s)	83
BclI	TGATCA	1 cut(s)	238
BcoDI	GTCTC	3 cut(s)	19, 946, 1054
BfoI	RGCGCY	1 cut(s)	109
BisI	GCNGC	1 cut(s)	620
BlsI	GCNGC	1 cut(s)	621
Bme1390I	CCNGG	1 cut(s)	83
Bme18I	GGWCC	1 cut(s)	548
BmeT110I	CYCGRG	1 cut(s)	1075
BmgT120I	GGNCC	2 cut(s)	266, 548
BmiI	GGNNCC	1 cut(s)	481
BmrFI	CCNGG	1 cut(s)	83
BmsI	GCATC	1 cut(s)	1108
BpiI	GAAGAC	2 cut(s)	1030, 1131
Bpu10I	CCTNAGC	1 cut(s)	109
BpuEI	CTTGAG	2 cut(s)	43, 608
Bsa29I	ATCGAT	1 cut(s)	816
BsaBI	GATNNNNATC	1 cut(s)	463
BsaWI	WCCGGW	2 cut(s)	789, 887
BsaXI	ACNNNNNCTCC	2 cut(s)	779, 809
Bsc4I	CCNNNNNNNGG	2 cut(s)	382, 1128
Bse118I	RCCGGY	1 cut(s)	887
Bse3DI	GCAATG	1 cut(s)	195
Bse8I	GATNNNNATC	1 cut(s)	463
BseBI	CCWGG	1 cut(s)	83
BseCI	ATCGAT	1 cut(s)	816
BseJI	GATNNNNATC	1 cut(s)	463
BseLI	CCNNNNNNNGG	2 cut(s)	382, 1128
BseMI	GCAATG	1 cut(s)	195
BseSI	GKGCMC	1 cut(s)	256
BseXI	GCAGC	1 cut(s)	631
Bsh1236I	CGCG	1 cut(s)	898
Bsh1285I	CGRYCG	1 cut(s)	816
BshFI	GGCC	1 cut(s)	268
BshNI	GGYRCC	1 cut(s)	479
BshTI	ACCGGT	1 cut(s)	887
BshVI	ATCGAT	1 cut(s)	816
BsiEI	CGRYCG	1 cut(s)	816
BsiHKAI	GWGCWC	2 cut(s)	256, 797
BsiHKCI	CYCGRG	1 cut(s)	1075
BsiSI	CCGG	2 cut(s)	790, 888
BslI	CCNNNNNNNGG	2 cut(s)	382, 1128
BsmAI	GTCTC	3 cut(s)	19, 946, 1054
BsmBI	CGTCTC	1 cut(s)	1054
BsmI	GAATGC	2 cut(s)	511, 1052
BsnI	GGCC	1 cut(s)	268
BsoBI	CYCGRG	1 cut(s)	1075
Bsp1286I	GDGCHC	2 cut(s)	256, 797
Bsp143I	GATC	5 cut(s)	238, 748, 813, 817, 1099
Bsp68I	TCGCGA	1 cut(s)	898
BspACI	CCGC	2 cut(s)	429, 995
BspANI	GGCC	1 cut(s)	268
BspDI	ATCGAT	1 cut(s)	816
BspFNI	CGCG	1 cut(s)	898
BspHI	TCATGA	2 cut(s)	417, 688
BspLI	GGNNCC	1 cut(s)	481
BspPI	GGATC	1 cut(s)	743
BspT107I	GGYRCC	1 cut(s)	479
BsrDI	GCAATG	1 cut(s)	195
BsrFI	RCCGGY	1 cut(s)	887
BssAI	RCCGGY	1 cut(s)	887
BssMI	GATC	5 cut(s)	238, 748, 813, 817, 1099
BssNAI	GTATAC	1 cut(s)	79
Bst1107I	GTATAC	1 cut(s)	79
Bst2UI	CCWGG	1 cut(s)	83
Bst4CI	ACNGT	4 cut(s)	137, 529, 570, 1065
Bst6I	CTCTTC	1 cut(s)	33
BstC8I	GCNNGC	1 cut(s)	270
BstDEI	CTNAG	1 cut(s)	109
BstFNI	CGCG	1 cut(s)	898
BstH2I	RGCGCY	1 cut(s)	109
BstHHI	GCGC	1 cut(s)	108
BstKTI	GATC	5 cut(s)	241, 751, 816, 820, 1102
BstMAI	GTCTC	3 cut(s)	19, 946, 1054
BstMBI	GATC	5 cut(s)	238, 748, 813, 817, 1099
BstMCI	CGRYCG	1 cut(s)	816
BstMWI	GCNNNNNNNGC	2 cut(s)	335, 743
BstNI	CCWGG	1 cut(s)	83
BstNSI	RCATGY	1 cut(s)	206
BstSCI	CCNGG	1 cut(s)	81
BstSLI	GKGCMC	1 cut(s)	256
BstUI	CGCG	1 cut(s)	898
BstV1I	GCAGC	1 cut(s)	631
BstV2I	GAAGAC	2 cut(s)	1030, 1131
BstZ17I	GTATAC	1 cut(s)	79
Bsu15I	ATCGAT	1 cut(s)	816
BsuRI	GGCC	1 cut(s)	268
BsuTUI	ATCGAT	1 cut(s)	816
BtsIMutI	CAGTG	2 cut(s)	702, 1251
BtuMI	TCGCGA	1 cut(s)	898
Cac8I	GCNNGC	1 cut(s)	270
CaiI	CAGNNNCTG	2 cut(s)	295, 527
CciI	TCATGA	2 cut(s)	417, 688
CfoI	GCGC	1 cut(s)	108
Cfr10I	RCCGGY	1 cut(s)	887
Cfr13I	GGNCC	2 cut(s)	266, 548
ClaI	ATCGAT	1 cut(s)	816
CseI	GACGC	2 cut(s)	743, 859
Csp6I	GTAC	3 cut(s)	56, 260, 525
CspAI	ACCGGT	1 cut(s)	887
CviAII	CATG	5 cut(s)	203, 301, 418, 443, 689
CviJI	RGCY	6 cut(s)	268, 564, 599, 622, 795, 1224
CviKI_1	RGCY	6 cut(s)	268, 564, 599, 622, 795, 1224
CviQI	GTAC	3 cut(s)	56, 260, 525
DdeI	CTNAG	1 cut(s)	109
DpnI	GATC	5 cut(s)	240, 750, 815, 819, 1101
DpnII	GATC	5 cut(s)	238, 748, 813, 817, 1099
DraI	TTTAAA	1 cut(s)	333
Eam1104I	CTCTTC	1 cut(s)	33
EarI	CTCTTC	1 cut(s)	33
EciI	GGCGGA	1 cut(s)	444
Ecl136II	GAGCTC	1 cut(s)	795
Eco24I	GRGCYC	1 cut(s)	797
Eco32I	GATATC	2 cut(s)	436, 917
Eco47I	GGWCC	1 cut(s)	548
Eco47III	AGCGCT	1 cut(s)	107
Eco53kI	GAGCTC	1 cut(s)	795
Eco57I	CTGAAG	3 cut(s)	621, 726, 1024
Eco88I	CYCGRG	1 cut(s)	1075
EcoICRI	GAGCTC	1 cut(s)	795
EcoO109I	RGGNCCY	1 cut(s)	548
EcoRI	GAATTC	1 cut(s)	754
EcoRII	CCWGG	1 cut(s)	81
EcoRV	GATATC	2 cut(s)	436, 917
EcoT38I	GRGCYC	1 cut(s)	797
Esp3I	CGTCTC	1 cut(s)	1054
FaeI	CATG	5 cut(s)	206, 304, 421, 446, 692
FalI	AAGNNNNNCTT	1 cut(s)	37
FatI	CATG	5 cut(s)	202, 300, 417, 442, 688
FbaI	TGATCA	1 cut(s)	238
FblI	GTMKAC	3 cut(s)	78, 943, 1212
Fnu4HI	GCNGC	1 cut(s)	620
FriOI	GRGCYC	1 cut(s)	797
Fsp4HI	GCNGC	1 cut(s)	620
GlaI	GCGC	1 cut(s)	107
GluI	GCNGC	1 cut(s)	620
HaeII	RGCGCY	1 cut(s)	109
HaeIII	GGCC	1 cut(s)	268
HapII	CCGG	2 cut(s)	790, 888
HgaI	GACGC	2 cut(s)	743, 859
HhaI	GCGC	1 cut(s)	108
Hin1II	CATG	5 cut(s)	206, 304, 421, 446, 692
Hin6I	GCGC	1 cut(s)	106
HinP1I	GCGC	1 cut(s)	106
HinfI	GANTC	8 cut(s)	421, 464, 554, 685, 717, 780, 985, 1013
HpaII	CCGG	2 cut(s)	790, 888
HphI	GGTGA	5 cut(s)	458, 550, 571, 692, 1224
Hpy166II	GTNNAC	6 cut(s)	79, 254, 838, 932, 944, 1213
Hpy188I	TCNGA	5 cut(s)	722, 753, 779, 1018, 1043
Hpy188III	TCNNGA	7 cut(s)	418, 647, 689, 811, 897, 1084, 1190
Hpy8I	GTNNAC	6 cut(s)	79, 254, 838, 932, 944, 1213
HpyAV	CCTTC	4 cut(s)	448, 838, 904, 964
HpyCH4III	ACNGT	4 cut(s)	137, 529, 570, 1065
HpyCH4V	TGCA	6 cut(s)	200, 206, 222, 254, 338, 1072
HpyF10VI	GCNNNNNNNGC	2 cut(s)	335, 743
HpyF3I	CTNAG	1 cut(s)	109
Hsp92II	CATG	5 cut(s)	206, 304, 421, 446, 692
HspAI	GCGC	1 cut(s)	106
Ksp22I	TGATCA	1 cut(s)	238
Kzo9I	GATC	5 cut(s)	238, 748, 813, 817, 1099
LmnI	GCTCC	3 cut(s)	616, 792, 800
Lsp1109I	GCAGC	1 cut(s)	631
LweI	GCATC	1 cut(s)	1108
MaeIII	GTNAC	1 cut(s)	700
MalI	GATC	5 cut(s)	240, 750, 815, 819, 1101
MboI	GATC	5 cut(s)	238, 748, 813, 817, 1099
MboII	GAAGA	7 cut(s)	50, 62, 885, 1030, 1031, 1099, 1136
MfeI	CAATTG	1 cut(s)	1237
MhlI	GDGCHC	2 cut(s)	256, 797
MluCI	AATT	9 cut(s)	117, 185, 496, 692, 754, 799, 1144, 1176, 1237
MlyI	GAGTC	1 cut(s)	726
MmeI	TCCRAC	2 cut(s)	594, 700
MnlI	CCTC	8 cut(s)	28, 91, 192, 589, 816, 835, 1008, 1147
MroXI	GAANNNNTTC	1 cut(s)	296
MseI	TTAA	4 cut(s)	161, 332, 360, 1031
MslI	CAYNNNNRTG	1 cut(s)	447
MspI	CCGG	2 cut(s)	790, 888
MspR9I	CCNGG	1 cut(s)	83
MunI	CAATTG	1 cut(s)	1237
Mva1269I	GAATGC	2 cut(s)	511, 1052
MvaI	CCWGG	1 cut(s)	83
MvnI	CGCG	1 cut(s)	898
MwoI	GCNNNNNNNGC	2 cut(s)	335, 743
NdeII	GATC	5 cut(s)	238, 748, 813, 817, 1099
NlaIII	CATG	5 cut(s)	206, 304, 421, 446, 692
NlaIV	GGNNCC	1 cut(s)	481
NmuCI	GTSAC	1 cut(s)	700
NruI	TCGCGA	1 cut(s)	898
NspI	RCATGY	1 cut(s)	206
PagI	TCATGA	2 cut(s)	417, 688
PcsI	WCGNNNNNNNCGW	1 cut(s)	809
PctI	GAATGC	2 cut(s)	511, 1052
PdmI	GAANNNNTTC	1 cut(s)	296
PfeI	GAWTC	7 cut(s)	421, 464, 554, 685, 780, 985, 1013
PinAI	ACCGGT	1 cut(s)	887
PkrI	GCNGC	1 cut(s)	621
Ple19I	CGATCG	1 cut(s)	816
PleI	GAGTC	1 cut(s)	725
PpsI	GAGTC	1 cut(s)	725
PpuMI	RGGWCCY	1 cut(s)	548
Psp124BI	GAGCTC	1 cut(s)	797
Psp5II	RGGWCCY	1 cut(s)	548
Psp6I	CCWGG	1 cut(s)	81
PspGI	CCWGG	1 cut(s)	81
PspN4I	GGNNCC	1 cut(s)	481
PspPI	GGNCC	2 cut(s)	266, 548
PspPPI	RGGWCCY	1 cut(s)	548
PstNI	CAGNNNCTG	2 cut(s)	295, 527
PvuI	CGATCG	1 cut(s)	816
RruI	TCGCGA	1 cut(s)	898
RsaI	GTAC	3 cut(s)	57, 261, 526
RsaNI	GTAC	3 cut(s)	56, 260, 525
RseI	CAYNNNNRTG	1 cut(s)	447
SacI	GAGCTC	1 cut(s)	797
SaqAI	TTAA	4 cut(s)	161, 332, 360, 1031
SatI	GCNGC	1 cut(s)	620
Sau3AI	GATC	5 cut(s)	238, 748, 813, 817, 1099
Sau96I	GGNCC	2 cut(s)	266, 548
SchI	GAGTC	1 cut(s)	726
ScrFI	CCNGG	1 cut(s)	83
SduI	GDGCHC	2 cut(s)	256, 797
SfaNI	GCATC	1 cut(s)	1108
SinI	GGWCC	1 cut(s)	548
SmiMI	CAYNNNNRTG	1 cut(s)	447
SmlI	CTYRAG	2 cut(s)	22, 623
SmoI	CTYRAG	2 cut(s)	22, 623
Sse9I	AATT	9 cut(s)	117, 185, 496, 692, 754, 799, 1144, 1176, 1237
SsiI	CCGC	2 cut(s)	429, 995
SstI	GAGCTC	1 cut(s)	797
StyD4I	CCNGG	1 cut(s)	81
TaaI	ACNGT	4 cut(s)	137, 529, 570, 1065
TaqI	TCGA	5 cut(s)	467, 711, 758, 812, 816
TasI	AATT	9 cut(s)	117, 185, 496, 692, 754, 799, 1144, 1176, 1237
TfiI	GAWTC	7 cut(s)	421, 464, 554, 685, 780, 985, 1013
Tru1I	TTAA	4 cut(s)	161, 332, 360, 1031
Tru9I	TTAA	4 cut(s)	161, 332, 360, 1031
TscAI	CASTG	2 cut(s)	709, 1258
TseFI	GTSAC	1 cut(s)	700
TseI	GCWGC	1 cut(s)	619
Tsp45I	GTSAC	1 cut(s)	700
TspDTI	ATGAA	7 cut(s)	289, 386, 406, 431, 477, 705, 867
TspRI	CASTG	2 cut(s)	709, 1258
VneI	GTGCAC	1 cut(s)	252
VpaK11BI	GGWCC	1 cut(s)	548
XapI	RAATTY	2 cut(s)	496, 754
XceI	RCATGY	1 cut(s)	206
XmiI	GTMKAC	3 cut(s)	78, 943, 1212
XmnI	GAANNNNTTC	1 cut(s)	296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.