Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0024863

Physical Location & Seq

Genomic Coordinates Forward (+)

69474889 .. 69476333

Gene Structure 1445 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035627

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGAGGAAGAGAAAGTAGAAGAAGTACCTGAAATAACCCATAGAGTATACCTGGATATTGATATTGAGGAACAGCGCTTAGGTAGAATTGTGATTGGATTATACGGTCAGGTTGTACCAAAAACTTTTTTAATGCCCGATTACTTACAACCTCAATTACAAACCATTGCACATGCAAACTCTGTTAGTTGCAGTTTCTTGTCAAATGATCAAGGGCAATGTGCACAGGTACTTGGACCTGCGATATTTGATTACCAACAGAACCTGTTCATGTTGTCATTATGCTTATTGAAACTTGCTTTAAATGCAGGAGAAAAAGGTAAAGGTGTTAATGGAAAACCACTCCACTATAAGGGAACGCCATTTCATCATATCATTCATGGTGATGGGAAGGGATATGAATCGAAATATGGTGGCACCTTTGCTGATGAGAATTTCAAAGTGAAGCATTCACATACAGGTACTGTTTCTATGGTGAATGCAGGACCTGATTCCAATGGCTCACAGTTCTTTATCACCACAATCAAGGCTAGTTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0005783 GO:0005794 GO:0005795 GO:0005802 GO:0005829 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031410 GO:0031982 GO:0031984 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0097708 GO:0098791 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

180

Amino Acids

19.73

Weight (kDa)

6.04

Isoelectric Point (pI)

32.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	107 - 176	1.1e-10	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0024863)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0119451
rosa_laevigata	RLG00000035627 RLG00000036277

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	247
AccB1I	GGYRCC	1 cut(s)	416
AccI	GTMKAC	1 cut(s)	48
AcsI	RAATTY	1 cut(s)	433
AfaI	GTAC	4 cut(s)	27, 117, 231, 463
AfeI	AGCGCT	1 cut(s)	77
AfiI	CCNNNNNNNGG	1 cut(s)	352
AgsI	TTSAA	2 cut(s)	292, 439
AjnI	CCWGG	1 cut(s)	51
Alw21I	GWGCWC	1 cut(s)	226
Alw44I	GTGCAC	1 cut(s)	222
AlwNI	CAGNNNCTG	3 cut(s)	265, 464, 488
Aor51HI	AGCGCT	1 cut(s)	77
ApaLI	GTGCAC	1 cut(s)	222
ApoI	RAATTY	1 cut(s)	433
Asp700I	GAANNNNTTC	1 cut(s)	266
AspLEI	GCGC	1 cut(s)	78
AspS9I	GGNCC	2 cut(s)	236, 485
AsuHPI	GGTGA	3 cut(s)	395, 487, 508
AvaII	GGWCC	2 cut(s)	236, 485
BaeGI	GKGCMC	1 cut(s)	226
BanI	GGYRCC	1 cut(s)	416
Bbv12I	GWGCWC	1 cut(s)	226
BccI	CCATC	1 cut(s)	380
BciT130I	CCWGG	1 cut(s)	53
BclI	TGATCA	1 cut(s)	208
BfaI	CTAG	1 cut(s)	531
BfoI	RGCGCY	1 cut(s)	79
BfuAI	ACCTGC	1 cut(s)	247
Bme1390I	CCNGG	1 cut(s)	53
Bme18I	GGWCC	2 cut(s)	236, 485
BmgT120I	GGNCC	2 cut(s)	236, 485
BmiI	GGNNCC	1 cut(s)	418
BmrFI	CCNGG	1 cut(s)	53
Bpu10I	CCTNAGC	1 cut(s)	79
BsaBI	GATNNNNATC	1 cut(s)	400
Bsc4I	CCNNNNNNNGG	1 cut(s)	352
Bse3DI	GCAATG	2 cut(s)	165, 224
Bse8I	GATNNNNATC	1 cut(s)	400
BseBI	CCWGG	1 cut(s)	53
BseJI	GATNNNNATC	1 cut(s)	400
BseLI	CCNNNNNNNGG	1 cut(s)	352
BseMI	GCAATG	2 cut(s)	165, 224
BseSI	GKGCMC	1 cut(s)	226
BshNI	GGYRCC	1 cut(s)	416
BsiHKAI	GWGCWC	1 cut(s)	226
BslI	CCNNNNNNNGG	1 cut(s)	352
BsmI	GAATGC	2 cut(s)	448, 484
Bsp1286I	GDGCHC	1 cut(s)	226
Bsp143I	GATC	1 cut(s)	208
BspLI	GGNNCC	1 cut(s)	418
BspMI	ACCTGC	1 cut(s)	247
BspT107I	GGYRCC	1 cut(s)	416
BsrDI	GCAATG	2 cut(s)	165, 224
BssMI	GATC	1 cut(s)	208
BssNAI	GTATAC	1 cut(s)	49
Bst1107I	GTATAC	1 cut(s)	49
Bst2UI	CCWGG	1 cut(s)	53
Bst4CI	ACNGT	3 cut(s)	107, 466, 507
Bst6I	CTCTTC	1 cut(s)	3
BstDEI	CTNAG	1 cut(s)	79
BstH2I	RGCGCY	1 cut(s)	79
BstHHI	GCGC	1 cut(s)	78
BstKTI	GATC	1 cut(s)	211
BstMBI	GATC	1 cut(s)	208
BstMWI	GCNNNNNNNGC	1 cut(s)	305
BstNI	CCWGG	1 cut(s)	53
BstNSI	RCATGY	1 cut(s)	176
BstSCI	CCNGG	1 cut(s)	51
BstSLI	GKGCMC	1 cut(s)	226
BstZ17I	GTATAC	1 cut(s)	49
BveI	ACCTGC	1 cut(s)	247
CaiI	CAGNNNCTG	3 cut(s)	265, 464, 488
CfoI	GCGC	1 cut(s)	78
Cfr13I	GGNCC	2 cut(s)	236, 485
Csp6I	GTAC	4 cut(s)	26, 116, 230, 462
CviAII	CATG	3 cut(s)	173, 271, 380
CviJI	RGCY	2 cut(s)	501, 530
CviKI_1	RGCY	2 cut(s)	501, 530
CviQI	GTAC	4 cut(s)	26, 116, 230, 462
DdeI	CTNAG	1 cut(s)	79
DpnI	GATC	1 cut(s)	210
DpnII	GATC	1 cut(s)	208
DraI	TTTAAA	1 cut(s)	303
Eam1104I	CTCTTC	1 cut(s)	3
EarI	CTCTTC	1 cut(s)	3
Eco47I	GGWCC	2 cut(s)	236, 485
Eco47III	AGCGCT	1 cut(s)	77
EcoO109I	RGGNCCY	1 cut(s)	485
EcoRII	CCWGG	1 cut(s)	51
FaeI	CATG	3 cut(s)	176, 274, 383
FatI	CATG	3 cut(s)	172, 270, 379
FbaI	TGATCA	1 cut(s)	208
FblI	GTMKAC	1 cut(s)	48
FspBI	CTAG	1 cut(s)	531
GlaI	GCGC	1 cut(s)	77
HaeII	RGCGCY	1 cut(s)	79
HhaI	GCGC	1 cut(s)	78
Hin1II	CATG	3 cut(s)	176, 274, 383
Hin6I	GCGC	1 cut(s)	76
HinP1I	GCGC	1 cut(s)	76
HinfI	GANTC	2 cut(s)	401, 491
HphI	GGTGA	3 cut(s)	395, 487, 508
Hpy166II	GTNNAC	2 cut(s)	49, 224
Hpy8I	GTNNAC	2 cut(s)	49, 224
HpyAV	CCTTC	1 cut(s)	385
HpyCH4III	ACNGT	3 cut(s)	107, 466, 507
HpyCH4V	TGCA	6 cut(s)	170, 176, 192, 224, 308, 482
HpyF10VI	GCNNNNNNNGC	1 cut(s)	305
HpyF3I	CTNAG	1 cut(s)	79
Hsp92II	CATG	3 cut(s)	176, 274, 383
HspAI	GCGC	1 cut(s)	76
Ksp22I	TGATCA	1 cut(s)	208
Kzo9I	GATC	1 cut(s)	208
MaeI	CTAG	1 cut(s)	531
MalI	GATC	1 cut(s)	210
MboI	GATC	1 cut(s)	208
MboII	GAAGA	2 cut(s)	20, 32
MhlI	GDGCHC	1 cut(s)	226
MluCI	AATT	3 cut(s)	87, 155, 433
MnlI	CCTC	2 cut(s)	61, 162
MroXI	GAANNNNTTC	1 cut(s)	266
MseI	TTAA	3 cut(s)	131, 302, 330
MslI	CAYNNNNRTG	1 cut(s)	384
MspR9I	CCNGG	1 cut(s)	53
Mva1269I	GAATGC	2 cut(s)	448, 484
MvaI	CCWGG	1 cut(s)	53
MwoI	GCNNNNNNNGC	1 cut(s)	305
NdeII	GATC	1 cut(s)	208
NlaIII	CATG	3 cut(s)	176, 274, 383
NlaIV	GGNNCC	1 cut(s)	418
NspI	RCATGY	1 cut(s)	176
PctI	GAATGC	2 cut(s)	448, 484
PdmI	GAANNNNTTC	1 cut(s)	266
PfeI	GAWTC	2 cut(s)	401, 491
PpuMI	RGGWCCY	1 cut(s)	485
Psp5II	RGGWCCY	1 cut(s)	485
Psp6I	CCWGG	1 cut(s)	51
PspGI	CCWGG	1 cut(s)	51
PspN4I	GGNNCC	1 cut(s)	418
PspPI	GGNCC	2 cut(s)	236, 485
PspPPI	RGGWCCY	1 cut(s)	485
PstNI	CAGNNNCTG	3 cut(s)	265, 464, 488
RsaI	GTAC	4 cut(s)	27, 117, 231, 463
RsaNI	GTAC	4 cut(s)	26, 116, 230, 462
RseI	CAYNNNNRTG	1 cut(s)	384
SaqAI	TTAA	3 cut(s)	131, 302, 330
Sau3AI	GATC	1 cut(s)	208
Sau96I	GGNCC	2 cut(s)	236, 485
ScrFI	CCNGG	1 cut(s)	53
SduI	GDGCHC	1 cut(s)	226
SinI	GGWCC	2 cut(s)	236, 485
SmiMI	CAYNNNNRTG	1 cut(s)	384
Sse9I	AATT	3 cut(s)	87, 155, 433
SspMI	CTAG	1 cut(s)	531
StyD4I	CCNGG	1 cut(s)	51
TaaI	ACNGT	3 cut(s)	107, 466, 507
TaqI	TCGA	1 cut(s)	404
TasI	AATT	3 cut(s)	87, 155, 433
TfiI	GAWTC	2 cut(s)	401, 491
Tru1I	TTAA	3 cut(s)	131, 302, 330
Tru9I	TTAA	3 cut(s)	131, 302, 330
TspDTI	ATGAA	4 cut(s)	259, 356, 368, 414
VneI	GTGCAC	1 cut(s)	222
VpaK11BI	GGWCC	2 cut(s)	236, 485
XapI	RAATTY	1 cut(s)	433
XceI	RCATGY	1 cut(s)	176
XmiI	GTMKAC	1 cut(s)	48
XmnI	GAANNNNTTC	1 cut(s)	266
XspI	CTAG	1 cut(s)	531

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.