Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0020824

Physical Location & Seq

Genomic Coordinates Reverse (-)

60307798 .. 60308231

Gene Structure 434 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGTATTACTGTGGATATTTACTGGGGATTTTTGGCAGGAAAATTATTGGCAGGATATTTGTCTACTTATTGGTGTACCATAGAGTCCTATCGATCTCTTTAAGGGTTTGCATGTGTTTACTTACACATGTTATTGATCTGACTATTATGTACTGGCCGGCTGCAGGGTTGGAGAGGTGTGGAAAGAGTTGCAGGTTGAGATGGATAAACTATTTGAGACCAGAACTTAAGAGAGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009719 GO:0009725 GO:0009739 GO:0009832 GO:0009834 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071554 GO:0071669 GO:0071840 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

79

Amino Acids

9.36

Weight (kDa)

9.77

Isoelectric Point (pI)

45.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020824)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22640 AT1G22640 AT1G22640
rosa_chinensis	RchiOBHm_Chr2g0142681
rosa_wichuraiana	Rw2G010180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	183
AccI	GTMKAC	1 cut(s)	63
AcoI	YGGCCR	1 cut(s)	155
AfaI	GTAC	2 cut(s)	77, 152
AfiI	CCNNNNNNNGG	1 cut(s)	164
AflII	CTTAAG	1 cut(s)	227
AflIII	ACRYGT	1 cut(s)	127
Alw26I	GTCTC	1 cut(s)	211
AoxI	GGCC	1 cut(s)	155
ApeKI	GCWGC	1 cut(s)	161
BbvI	GCAGC	1 cut(s)	148
BccI	CCATC	1 cut(s)	195
BcoDI	GTCTC	1 cut(s)	211
BfmI	CTRYAG	1 cut(s)	162
BfrI	CTTAAG	1 cut(s)	227
BfuAI	ACCTGC	1 cut(s)	183
BisI	GCNGC	1 cut(s)	162
BlsI	GCNGC	1 cut(s)	163
BmrI	ACTGGG	1 cut(s)	32
BmuI	ACTGGG	1 cut(s)	32
Bsa29I	ATCGAT	1 cut(s)	92
BsaI	GGTCTC	1 cut(s)	211
Bsc4I	CCNNNNNNNGG	1 cut(s)	164
Bse118I	RCCGGY	1 cut(s)	157
Bse1I	ACTGG	2 cut(s)	27, 158
BseCI	ATCGAT	1 cut(s)	92
BseLI	CCNNNNNNNGG	1 cut(s)	164
BseNI	ACTGG	2 cut(s)	27, 158
BseXI	GCAGC	1 cut(s)	148
BshFI	GGCC	1 cut(s)	157
BshVI	ATCGAT	1 cut(s)	92
BsiSI	CCGG	1 cut(s)	158
BslI	CCNNNNNNNGG	1 cut(s)	164
BsmAI	GTCTC	1 cut(s)	211
BsnI	GGCC	1 cut(s)	157
Bso31I	GGTCTC	1 cut(s)	211
Bsp143I	GATC	2 cut(s)	93, 136
BspANI	GGCC	1 cut(s)	157
BspDI	ATCGAT	1 cut(s)	92
BspMAI	CTGCAG	1 cut(s)	166
BspMI	ACCTGC	1 cut(s)	183
BspTI	CTTAAG	1 cut(s)	227
BspTNI	GGTCTC	1 cut(s)	211
BsrFI	RCCGGY	1 cut(s)	157
BsrI	ACTGG	2 cut(s)	27, 158
BssAI	RCCGGY	1 cut(s)	157
BssMI	GATC	2 cut(s)	93, 136
Bst4CI	ACNGT	1 cut(s)	11
BstAFI	CTTAAG	1 cut(s)	227
BstC8I	GCNNGC	1 cut(s)	159
BstKTI	GATC	2 cut(s)	96, 139
BstMAI	GTCTC	1 cut(s)	211
BstMBI	GATC	2 cut(s)	93, 136
BstNSI	RCATGY	2 cut(s)	115, 131
BstSFI	CTRYAG	1 cut(s)	162
BstV1I	GCAGC	1 cut(s)	148
Bsu15I	ATCGAT	1 cut(s)	92
BsuRI	GGCC	1 cut(s)	157
BsuTUI	ATCGAT	1 cut(s)	92
BveI	ACCTGC	1 cut(s)	183
Cac8I	GCNNGC	1 cut(s)	159
Cfr10I	RCCGGY	1 cut(s)	157
ClaI	ATCGAT	1 cut(s)	92
Csp6I	GTAC	2 cut(s)	76, 151
CviAII	CATG	2 cut(s)	112, 128
CviJI	RGCY	3 cut(s)	157, 161, 237
CviKI_1	RGCY	3 cut(s)	157, 161, 237
CviQI	GTAC	2 cut(s)	76, 151
DpnI	GATC	2 cut(s)	95, 138
DpnII	GATC	2 cut(s)	93, 136
EaeI	YGGCCR	1 cut(s)	155
Eco31I	GGTCTC	1 cut(s)	211
FaeI	CATG	2 cut(s)	115, 131
FaiI	YATR	4 cut(s)	81, 113, 129, 149
FatI	CATG	2 cut(s)	111, 127
FblI	GTMKAC	1 cut(s)	63
Fnu4HI	GCNGC	1 cut(s)	162
Fsp4HI	GCNGC	1 cut(s)	162
GluI	GCNGC	1 cut(s)	162
HaeIII	GGCC	1 cut(s)	157
HapII	CCGG	1 cut(s)	158
Hin1II	CATG	2 cut(s)	115, 131
HinfI	GANTC	1 cut(s)	84
HpaII	CCGG	1 cut(s)	158
Hpy166II	GTNNAC	3 cut(s)	64, 76, 119
Hpy188I	TCNGA	1 cut(s)	141
Hpy8I	GTNNAC	3 cut(s)	64, 76, 119
HpyCH4III	ACNGT	1 cut(s)	11
HpyCH4V	TGCA	3 cut(s)	111, 164, 192
Hsp92II	CATG	2 cut(s)	115, 131
KroI	GCCGGC	1 cut(s)	157
KroNI	GCCGGC	1 cut(s)	159
Kzo9I	GATC	2 cut(s)	93, 136
LpnPI	CCDG	8 cut(s)	8, 22, 37, 139, 150, 171, 178, 234
Lsp1109I	GCAGC	1 cut(s)	148
MalI	GATC	2 cut(s)	95, 138
MboI	GATC	2 cut(s)	93, 136
MluCI	AATT	1 cut(s)	42
MlyI	GAGTC	1 cut(s)	93
MmeI	TCCRAC	1 cut(s)	150
MnlI	CCTC	2 cut(s)	168, 227
MroNI	GCCGGC	1 cut(s)	157
MseI	TTAA	2 cut(s)	101, 228
MspCI	CTTAAG	1 cut(s)	227
MspI	CCGG	1 cut(s)	158
NaeI	GCCGGC	1 cut(s)	159
NdeII	GATC	2 cut(s)	93, 136
NgoMIV	GCCGGC	1 cut(s)	157
NlaIII	CATG	2 cut(s)	115, 131
NspI	RCATGY	2 cut(s)	115, 131
PciI	ACATGT	1 cut(s)	127
PdiI	GCCGGC	1 cut(s)	159
PkrI	GCNGC	1 cut(s)	163
PleI	GAGTC	1 cut(s)	92
PpsI	GAGTC	1 cut(s)	92
PscI	ACATGT	1 cut(s)	127
PstI	CTGCAG	1 cut(s)	166
RsaI	GTAC	2 cut(s)	77, 152
RsaNI	GTAC	2 cut(s)	76, 151
SaqAI	TTAA	2 cut(s)	101, 228
SatI	GCNGC	1 cut(s)	162
Sau3AI	GATC	2 cut(s)	93, 136
SchI	GAGTC	1 cut(s)	93
SetI	ASST	2 cut(s)	179, 197
SfcI	CTRYAG	1 cut(s)	162
SmlI	CTYRAG	1 cut(s)	227
SmoI	CTYRAG	1 cut(s)	227
Sse9I	AATT	1 cut(s)	42
TaaI	ACNGT	1 cut(s)	11
TaqI	TCGA	1 cut(s)	92
TasI	AATT	1 cut(s)	42
TatI	WGTACW	1 cut(s)	150
Tru1I	TTAA	2 cut(s)	101, 228
Tru9I	TTAA	2 cut(s)	101, 228
TseI	GCWGC	1 cut(s)	161
Vha464I	CTTAAG	1 cut(s)	227
XceI	RCATGY	2 cut(s)	115, 131
XmiI	GTMKAC	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.