RchiOBHm_Chr2g0149751

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0018718
Physical Location & Seq
Reverse (-)
67561975 .. 67562317
343 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 207 bp
ATGGGTGTGTTACAAGTGTTTGATCTGCAAGAAAAAGTTAAAGGAAAGAGTGGTGCTGCGTCAGCTTGCCCTTACTGCGCAGGCCCCGTTTTGGCTTGGGACTTTGATGCCGACTTGATCTTTTTCTGTTGTATACCTATTTCCCACAAAACTAAGAGGAAGTTCTACTGCACCATTTGCTCCAGGCGCCTAGTTCCGGTCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

68

Amino Acids

7.53

Weight (kDa)

8.85

Isoelectric Point (pI)

63.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018718)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10695 AT5G10695
malus_domestica MD09G1160500.v1.1 MD17G1146300.v1.1
prunus_persica Prupe.3G019100_v2.0.a1
pyrus_communis pycom09g07910
rosa_chinensis RchiOBHm_Chr2g0149751
rosa_roxburghii Rroxscaffold_2G00097750
rosa_wichuraiana Rw2G038750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 79
AccB1I GGYRCC 1 cut(s) 186
AccI GTMKAC 1 cut(s) 133
AcyI GRCGYC 1 cut(s) 187
AfiI CCNNNNNNNGG 2 cut(s) 91, 196
AjnI CCWGG 1 cut(s) 182
AluBI AGCT 1 cut(s) 65
AluI AGCT 1 cut(s) 65
AoxI GGCC 1 cut(s) 82
ApeKI GCWGC 1 cut(s) 56
AspLEI GCGC 2 cut(s) 80, 189
AspS9I GGNCC 1 cut(s) 83
BanI GGYRCC 1 cut(s) 186
BbvI GCAGC 1 cut(s) 43
BciT130I CCWGG 1 cut(s) 184
BfaI CTAG 1 cut(s) 191
BfoI RGCGCY 1 cut(s) 190
BisI GCNGC 1 cut(s) 57
BlsI GCNGC 1 cut(s) 58
Bme1390I CCNGG 1 cut(s) 184
BmgT120I GGNCC 1 cut(s) 83
BmiI GGNNCC 2 cut(s) 85, 188
BmrFI CCNGG 1 cut(s) 184
BmsI GCATC 1 cut(s) 97
BpmI CTGGAG 1 cut(s) 166
BsaHI GRCGYC 1 cut(s) 187
BsaWI WCCGGW 1 cut(s) 196
Bsc4I CCNNNNNNNGG 2 cut(s) 91, 196
BseBI CCWGG 1 cut(s) 184
BseLI CCNNNNNNNGG 2 cut(s) 91, 196
BseXI GCAGC 1 cut(s) 43
BsgI GTGCAG 1 cut(s) 154
BshFI GGCC 1 cut(s) 84
BshNI GGYRCC 1 cut(s) 186
BsiSI CCGG 1 cut(s) 197
BslFI GGGAC 1 cut(s) 113
BslI CCNNNNNNNGG 2 cut(s) 91, 196
BsmFI GGGAC 1 cut(s) 113
BsnI GGCC 1 cut(s) 84
Bsp143I GATC 2 cut(s) 22, 117
BspANI GGCC 1 cut(s) 84
BspLI GGNNCC 2 cut(s) 85, 188
BspT107I GGYRCC 1 cut(s) 186
BssMI GATC 2 cut(s) 22, 117
BssNAI GTATAC 1 cut(s) 134
BssNI GRCGYC 1 cut(s) 187
Bst1107I GTATAC 1 cut(s) 134
Bst2UI CCWGG 1 cut(s) 184
BstACI GRCGYC 1 cut(s) 187
BstAPI GCANNNNNTGC 1 cut(s) 177
BstC8I GCNNGC 2 cut(s) 67, 82
BstDEI CTNAG 1 cut(s) 153
BstH2I RGCGCY 1 cut(s) 190
BstHHI GCGC 2 cut(s) 80, 189
BstKTI GATC 2 cut(s) 25, 120
BstMBI GATC 2 cut(s) 22, 117
BstMWI GCNNNNNNNGC 4 cut(s) 62, 75, 177, 186
BstNI CCWGG 1 cut(s) 184
BstSCI CCNGG 1 cut(s) 182
BstV1I GCAGC 1 cut(s) 43
BstZ17I GTATAC 1 cut(s) 134
BsuRI GGCC 1 cut(s) 84
Cac8I GCNNGC 2 cut(s) 67, 82
CfoI GCGC 2 cut(s) 80, 189
Cfr13I GGNCC 1 cut(s) 83
CseI GACGC 1 cut(s) 48
CviJI RGCY 3 cut(s) 65, 84, 95
CviKI_1 RGCY 3 cut(s) 65, 84, 95
DdeI CTNAG 1 cut(s) 153
DinI GGCGCC 1 cut(s) 188
DpnI GATC 2 cut(s) 24, 119
DpnII GATC 2 cut(s) 22, 117
EcoO109I RGGNCCY 1 cut(s) 83
EcoRII CCWGG 1 cut(s) 182
EgeI GGCGCC 1 cut(s) 188
EheI GGCGCC 1 cut(s) 188
FaiI YATR 1 cut(s) 134
FaqI GGGAC 1 cut(s) 113
FblI GTMKAC 1 cut(s) 133
Fnu4HI GCNGC 1 cut(s) 57
Fsp4HI GCNGC 1 cut(s) 57
FspBI CTAG 1 cut(s) 191
FspI TGCGCA 1 cut(s) 79
GlaI GCGC 2 cut(s) 79, 188
GluI GCNGC 1 cut(s) 57
GsuI CTGGAG 1 cut(s) 166
HaeII RGCGCY 1 cut(s) 190
HaeIII GGCC 1 cut(s) 84
HapII CCGG 1 cut(s) 197
HgaI GACGC 1 cut(s) 48
HhaI GCGC 2 cut(s) 80, 189
Hin1I GRCGYC 1 cut(s) 187
Hin6I GCGC 2 cut(s) 78, 187
HinP1I GCGC 2 cut(s) 78, 187
HpaII CCGG 1 cut(s) 197
Hpy166II GTNNAC 1 cut(s) 134
Hpy188III TCNNGA 1 cut(s) 204
Hpy8I GTNNAC 1 cut(s) 134
HpyCH4V TGCA 2 cut(s) 28, 171
HpyF10VI GCNNNNNNNGC 4 cut(s) 62, 75, 177, 186
HpyF3I CTNAG 1 cut(s) 153
Hsp92I GRCGYC 1 cut(s) 187
HspAI GCGC 2 cut(s) 78, 187
KasI GGCGCC 1 cut(s) 186
Kzo9I GATC 2 cut(s) 22, 117
LmnI GCTCC 1 cut(s) 185
LpnPI CCDG 3 cut(s) 66, 169, 196
Lsp1109I GCAGC 1 cut(s) 43
LweI GCATC 1 cut(s) 97
MaeI CTAG 1 cut(s) 191
MaeIII GTNAC 1 cut(s) 9
MalI GATC 2 cut(s) 24, 119
MboI GATC 2 cut(s) 22, 117
Mly113I GGCGCC 1 cut(s) 187
MnlI CCTC 1 cut(s) 150
MseI TTAA 1 cut(s) 39
MspI CCGG 1 cut(s) 197
MspR9I CCNGG 1 cut(s) 184
MvaI CCWGG 1 cut(s) 184
MwoI GCNNNNNNNGC 4 cut(s) 62, 75, 177, 186
NarI GGCGCC 1 cut(s) 187
NdeII GATC 2 cut(s) 22, 117
NlaIV GGNNCC 2 cut(s) 85, 188
NsbI TGCGCA 1 cut(s) 79
PkrI GCNGC 1 cut(s) 58
PluTI GGCGCC 1 cut(s) 190
Psp6I CCWGG 1 cut(s) 182
PspGI CCWGG 1 cut(s) 182
PspN4I GGNNCC 2 cut(s) 85, 188
PspPI GGNCC 1 cut(s) 83
SaqAI TTAA 1 cut(s) 39
SatI GCNGC 1 cut(s) 57
Sau3AI GATC 2 cut(s) 22, 117
Sau96I GGNCC 1 cut(s) 83
ScrFI CCNGG 1 cut(s) 184
SetI ASST 2 cut(s) 67, 139
SfaNI GCATC 1 cut(s) 97
SfoI GGCGCC 1 cut(s) 188
SspDI GGCGCC 1 cut(s) 186
SspMI CTAG 1 cut(s) 191
StyD4I CCNGG 1 cut(s) 182
Tru1I TTAA 1 cut(s) 39
Tru9I TTAA 1 cut(s) 39
TseI GCWGC 1 cut(s) 56
XmiI GTMKAC 1 cut(s) 133
XspI CTAG 1 cut(s) 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.