Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0024889

Physical Location & Seq

Genomic Coordinates Reverse (-)

71984585 .. 71984884

Gene Structure 300 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGTTTTGTATTGTACAGAATGACTGGTCAGTTGTAAAACGAGGATGGGATGCCCAAGTTCTCGGTGAAGCCCCCTATAAATTTAAGAATGATGTTGAAGCTATCAAGACATTGAGACCAGAACCAAATGCCAATGACCAGTATCTACCTCCTTTTGTTATTGTTGATGACAGTGGAGAGCCTGTGGGCCCAATAGTTGATGGTGATGCTGTTGTAACATTCAACTTCCGAGCAGATCGTATGGTCATGGCTCCTGAGGCATTTGAGCATGCAGATTTTGAAAAATTCAATAGAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004619 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009506 GO:0009507 GO:0009536 GO:0009555 GO:0009628 GO:0009987 GO:0010035 GO:0010038 GO:0010118 GO:0016020 GO:0016853 GO:0016866 GO:0016868 GO:0030054 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046537 GO:0046686 GO:0048046 GO:0048229 GO:0048856 GO:0050896 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00010 ko00260 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00010 map00260 map00680 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Metalloenzyme iPGM_N

Protein Analysis

99

Amino Acids

11.23

Weight (kDa)

4.5

Isoelectric Point (pI)

22.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
iPGM_N	PF06415	7 - 98	6.4e-19	BPG-independent PGAM N-terminus (iPGM_N)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0024889)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0154991
rosa_multiflora	Rmu_sc0033456.1_g000001
rosa_samantha	Rh6AG418100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	80, 284
AfaI	GTAC	1 cut(s)	15
AgsI	TTSAA	4 cut(s)	98, 223, 281, 289
AluBI	AGCT	1 cut(s)	101
AluI	AGCT	1 cut(s)	101
Alw26I	GTCTC	1 cut(s)	109
AoxI	GGCC	1 cut(s)	187
ApaI	GGGCCC	1 cut(s)	191
ApoI	RAATTY	2 cut(s)	80, 284
AspS9I	GGNCC	2 cut(s)	187, 188
AsuHPI	GGTGA	2 cut(s)	77, 215
AxyI	CCTNAGG	1 cut(s)	255
BaeGI	GKGCMC	1 cut(s)	191
BanII	GRGCYC	1 cut(s)	191
BccI	CCATC	2 cut(s)	39, 194
BcoDI	GTCTC	1 cut(s)	109
BmgT120I	GGNCC	2 cut(s)	187, 188
BmiI	GGNNCC	2 cut(s)	189, 252
BmsI	GCATC	2 cut(s)	40, 196
BsaI	GGTCTC	1 cut(s)	109
BsaXI	ACNNNNNCTCC	2 cut(s)	168, 198
Bse1I	ACTGG	2 cut(s)	29, 139
Bse21I	CCTNAGG	1 cut(s)	255
BseGI	GGATG	2 cut(s)	50, 55
BseMII	CTCAG	1 cut(s)	246
BseNI	ACTGG	2 cut(s)	29, 139
BseSI	GKGCMC	1 cut(s)	191
BshFI	GGCC	1 cut(s)	189
BsmAI	GTCTC	1 cut(s)	109
BsnI	GGCC	1 cut(s)	189
Bso31I	GGTCTC	1 cut(s)	109
Bsp120I	GGGCCC	1 cut(s)	187
Bsp1286I	GDGCHC	1 cut(s)	191
Bsp1407I	TGTACA	1 cut(s)	13
Bsp143I	GATC	1 cut(s)	235
BspANI	GGCC	1 cut(s)	189
BspCNI	CTCAG	1 cut(s)	247
BspLI	GGNNCC	2 cut(s)	189, 252
BspTNI	GGTCTC	1 cut(s)	109
BsrGI	TGTACA	1 cut(s)	13
BsrI	ACTGG	2 cut(s)	29, 139
BssMI	GATC	1 cut(s)	235
Bst4CI	ACNGT	1 cut(s)	173
BstAUI	TGTACA	1 cut(s)	13
BstC8I	GCNNGC	1 cut(s)	270
BstDEI	CTNAG	1 cut(s)	255
BstF5I	GGATG	2 cut(s)	50, 55
BstKTI	GATC	1 cut(s)	238
BstMAI	GTCTC	1 cut(s)	109
BstMBI	GATC	1 cut(s)	235
BstMWI	GCNNNNNNNGC	1 cut(s)	257
BstNSI	RCATGY	1 cut(s)	272
BstSLI	GKGCMC	1 cut(s)	191
Bsu36I	CCTNAGG	1 cut(s)	255
BsuRI	GGCC	1 cut(s)	189
BtsCI	GGATG	2 cut(s)	50, 55
BtsIMutI	CAGTG	1 cut(s)	178
Cac8I	GCNNGC	1 cut(s)	270
Cfr13I	GGNCC	2 cut(s)	187, 188
Csp6I	GTAC	1 cut(s)	14
CviAII	CATG	2 cut(s)	247, 269
CviJI	RGCY	5 cut(s)	71, 101, 181, 189, 251
CviKI_1	RGCY	5 cut(s)	71, 101, 181, 189, 251
CviQI	GTAC	1 cut(s)	14
DdeI	CTNAG	1 cut(s)	255
DpnI	GATC	1 cut(s)	237
DpnII	GATC	1 cut(s)	235
Eco24I	GRGCYC	1 cut(s)	191
Eco31I	GGTCTC	1 cut(s)	109
Eco81I	CCTNAGG	1 cut(s)	255
EcoT38I	GRGCYC	1 cut(s)	191
FaeI	CATG	2 cut(s)	250, 272
FaiI	YATR	4 cut(s)	78, 242, 248, 270
FatI	CATG	2 cut(s)	246, 268
FokI	GGATG	2 cut(s)	57, 62
FriOI	GRGCYC	1 cut(s)	191
HaeIII	GGCC	1 cut(s)	189
Hin1II	CATG	2 cut(s)	250, 272
HphI	GGTGA	2 cut(s)	77, 215
Hpy188I	TCNGA	1 cut(s)	230
Hpy188III	TCNNGA	2 cut(s)	106, 254
HpyCH4III	ACNGT	1 cut(s)	173
HpyCH4V	TGCA	1 cut(s)	272
HpyF10VI	GCNNNNNNNGC	1 cut(s)	257
HpyF3I	CTNAG	1 cut(s)	255
Hsp92II	CATG	2 cut(s)	250, 272
Kzo9I	GATC	1 cut(s)	235
LmnI	GCTCC	1 cut(s)	256
LpnPI	CCDG	5 cut(s)	10, 132, 152, 195, 267
LweI	GCATC	2 cut(s)	40, 196
MaeIII	GTNAC	1 cut(s)	214
MalI	GATC	1 cut(s)	237
MboI	GATC	1 cut(s)	235
MhlI	GDGCHC	1 cut(s)	191
MluCI	AATT	2 cut(s)	80, 284
MnlI	CCTC	3 cut(s)	35, 159, 250
MseI	TTAA	1 cut(s)	84
MwoI	GCNNNNNNNGC	1 cut(s)	257
NdeII	GATC	1 cut(s)	235
NlaIII	CATG	2 cut(s)	250, 272
NlaIV	GGNNCC	2 cut(s)	189, 252
NspI	RCATGY	1 cut(s)	272
PaeI	GCATGC	1 cut(s)	272
PspN4I	GGNNCC	2 cut(s)	189, 252
PspOMI	GGGCCC	1 cut(s)	187
PspPI	GGNCC	2 cut(s)	187, 188
RsaI	GTAC	1 cut(s)	15
RsaNI	GTAC	1 cut(s)	14
SaqAI	TTAA	1 cut(s)	84
Sau3AI	GATC	1 cut(s)	235
Sau96I	GGNCC	2 cut(s)	187, 188
SduI	GDGCHC	1 cut(s)	191
SetI	ASST	2 cut(s)	103, 151
SfaNI	GCATC	2 cut(s)	40, 196
SphI	GCATGC	1 cut(s)	272
Sse9I	AATT	2 cut(s)	80, 284
TaaI	ACNGT	1 cut(s)	173
TasI	AATT	2 cut(s)	80, 284
TatI	WGTACW	1 cut(s)	13
Tru1I	TTAA	1 cut(s)	84
Tru9I	TTAA	1 cut(s)	84
TscAI	CASTG	1 cut(s)	178
TspRI	CASTG	1 cut(s)	178
XapI	RAATTY	2 cut(s)	80, 284
XceI	RCATGY	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.