Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0033456.1

Orthogroup ID

OG0024889

Physical Location & Seq

Genomic Coordinates Reverse (-)

216 .. 515

Gene Structure 300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0033456.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

atgttttgtattgtacagaatgactggttagtcgtgaaacgaggatgggatgcccaagttctcggtgaagccccctataaatttaagaacgttgttgaagctatcaagacattgagagtagaaccaaatgccaatgaccagtatctacctccttttgttattgttgatgacagtggaaagcctgtgggcccaataattgatggtgctgctgttgtaacattcaacttccgagcagatcgtatggtcatggctgctaaagcatttgagtatgcagattttaataaattcgatagagtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004619 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009506 GO:0009507 GO:0009536 GO:0009555 GO:0009628 GO:0009987 GO:0010035 GO:0010038 GO:0010118 GO:0016020 GO:0016853 GO:0016866 GO:0016868 GO:0030054 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046537 GO:0046686 GO:0048046 GO:0048229 GO:0048856 GO:0050896 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00010 ko00260 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00010 map00260 map00680 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Metalloenzyme iPGM_N

Protein Analysis

99

Amino Acids

11.2

Weight (kDa)

5.29

Isoelectric Point (pI)

21.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024889)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0154991
rosa_multiflora	Rmu_sc0033456.1_g000001
rosa_samantha	Rh6AG418100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	29
AclI	AACGTT	1 cut(s)	90
AcsI	RAATTY	2 cut(s)	80, 284
AfaI	GTAC	1 cut(s)	15
AgsI	TTSAA	2 cut(s)	98, 223
AluBI	AGCT	1 cut(s)	101
AluI	AGCT	1 cut(s)	101
AoxI	GGCC	1 cut(s)	187
ApaI	GGGCCC	1 cut(s)	191
ApeKI	GCWGC	2 cut(s)	206, 251
ApoI	RAATTY	2 cut(s)	80, 284
AspS9I	GGNCC	2 cut(s)	187, 188
AsuHPI	GGTGA	1 cut(s)	77
BaeGI	GKGCMC	1 cut(s)	191
BanII	GRGCYC	1 cut(s)	191
BbvI	GCAGC	2 cut(s)	193, 238
BccI	CCATC	2 cut(s)	39, 194
BisI	GCNGC	2 cut(s)	207, 252
BlsI	GCNGC	2 cut(s)	208, 253
BmgT120I	GGNCC	2 cut(s)	187, 188
BmiI	GGNNCC	1 cut(s)	189
BmsI	GCATC	1 cut(s)	40
Bse1I	ACTGG	2 cut(s)	29, 139
BseGI	GGATG	2 cut(s)	50, 55
BseNI	ACTGG	2 cut(s)	29, 139
BseSI	GKGCMC	1 cut(s)	191
BseXI	GCAGC	2 cut(s)	193, 238
BshFI	GGCC	1 cut(s)	189
BsnI	GGCC	1 cut(s)	189
Bsp120I	GGGCCC	1 cut(s)	187
Bsp1286I	GDGCHC	1 cut(s)	191
Bsp1407I	TGTACA	1 cut(s)	13
Bsp143I	GATC	1 cut(s)	235
BspANI	GGCC	1 cut(s)	189
BspLI	GGNNCC	1 cut(s)	189
BsrGI	TGTACA	1 cut(s)	13
BsrI	ACTGG	2 cut(s)	29, 139
BssMI	GATC	1 cut(s)	235
Bst4CI	ACNGT	1 cut(s)	173
BstAUI	TGTACA	1 cut(s)	13
BstF5I	GGATG	2 cut(s)	50, 55
BstKTI	GATC	1 cut(s)	238
BstMBI	GATC	1 cut(s)	235
BstMWI	GCNNNNNNNGC	1 cut(s)	257
BstSLI	GKGCMC	1 cut(s)	191
BstV1I	GCAGC	2 cut(s)	193, 238
BsuRI	GGCC	1 cut(s)	189
BtsCI	GGATG	2 cut(s)	50, 55
BtsIMutI	CAGTG	1 cut(s)	178
Cfr13I	GGNCC	2 cut(s)	187, 188
Csp6I	GTAC	1 cut(s)	14
CviAII	CATG	1 cut(s)	247
CviJI	RGCY	5 cut(s)	71, 101, 181, 189, 251
CviKI_1	RGCY	5 cut(s)	71, 101, 181, 189, 251
CviQI	GTAC	1 cut(s)	14
DpnI	GATC	1 cut(s)	237
DpnII	GATC	1 cut(s)	235
DrdI	GACNNNNNNGTC	1 cut(s)	29
DseDI	GACNNNNNNGTC	1 cut(s)	29
Eco24I	GRGCYC	1 cut(s)	191
EcoT38I	GRGCYC	1 cut(s)	191
FaeI	CATG	1 cut(s)	250
FaiI	YATR	4 cut(s)	78, 242, 248, 270
FatI	CATG	1 cut(s)	246
Fnu4HI	GCNGC	2 cut(s)	207, 252
FokI	GGATG	2 cut(s)	57, 62
FriOI	GRGCYC	1 cut(s)	191
Fsp4HI	GCNGC	2 cut(s)	207, 252
GluI	GCNGC	2 cut(s)	207, 252
HaeIII	GGCC	1 cut(s)	189
Hin1II	CATG	1 cut(s)	250
HphI	GGTGA	1 cut(s)	77
Hpy188I	TCNGA	1 cut(s)	230
Hpy188III	TCNNGA	2 cut(s)	34, 106
HpyCH4III	ACNGT	1 cut(s)	173
HpyCH4IV	ACGT	1 cut(s)	90
HpyCH4V	TGCA	1 cut(s)	272
HpyF10VI	GCNNNNNNNGC	1 cut(s)	257
HpySE526I	ACGT	1 cut(s)	90
Hsp92II	CATG	1 cut(s)	250
Kzo9I	GATC	1 cut(s)	235
LpnPI	CCDG	3 cut(s)	10, 152, 195
Lsp1109I	GCAGC	2 cut(s)	193, 238
LweI	GCATC	1 cut(s)	40
MaeII	ACGT	1 cut(s)	90
MaeIII	GTNAC	1 cut(s)	214
MalI	GATC	1 cut(s)	237
MboI	GATC	1 cut(s)	235
MhlI	GDGCHC	1 cut(s)	191
MluCI	AATT	3 cut(s)	80, 195, 284
MnlI	CCTC	2 cut(s)	35, 159
MseI	TTAA	2 cut(s)	84, 279
MwoI	GCNNNNNNNGC	1 cut(s)	257
NdeII	GATC	1 cut(s)	235
NlaIII	CATG	1 cut(s)	250
NlaIV	GGNNCC	1 cut(s)	189
PkrI	GCNGC	2 cut(s)	208, 253
Psp1406I	AACGTT	1 cut(s)	90
PspN4I	GGNNCC	1 cut(s)	189
PspOMI	GGGCCC	1 cut(s)	187
PspPI	GGNCC	2 cut(s)	187, 188
RsaI	GTAC	1 cut(s)	15
RsaNI	GTAC	1 cut(s)	14
SaqAI	TTAA	2 cut(s)	84, 279
SatI	GCNGC	2 cut(s)	207, 252
Sau3AI	GATC	1 cut(s)	235
Sau96I	GGNCC	2 cut(s)	187, 188
SduI	GDGCHC	1 cut(s)	191
SetI	ASST	3 cut(s)	93, 103, 151
SfaNI	GCATC	1 cut(s)	40
Sse9I	AATT	3 cut(s)	80, 195, 284
TaaI	ACNGT	1 cut(s)	173
TaiI	ACGT	1 cut(s)	93
TaqI	TCGA	1 cut(s)	288
TasI	AATT	3 cut(s)	80, 195, 284
TatI	WGTACW	1 cut(s)	13
Tru1I	TTAA	2 cut(s)	84, 279
Tru9I	TTAA	2 cut(s)	84, 279
TscAI	CASTG	1 cut(s)	178
TseI	GCWGC	2 cut(s)	206, 251
TspRI	CASTG	1 cut(s)	178
XapI	RAATTY	2 cut(s)	80, 284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.