Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0024889

Physical Location & Seq

Genomic Coordinates Reverse (-)

61209266 .. 61209565

Gene Structure 300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG418100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGTTTTGTATTGTACAGAATGACTGGTCAGTTGTAAAACGAGGATGGGATGCCCAAGTTCTTGGTGAAGCCCCCTATAAATTTAAGAATGCTGTTGAAGCTATCAAGACATTGAGAGCAGAACCAAATGCCAATGACCAGTATCTACCTCCTTTTGTTATTGTTGATGACAGTGGAAAGCCTGTGGGCCCAATAAATGATGGTGATGCTGTTGTAACATTCAACTTCCGAGCAGATCGTATGGTCATGGCTGCTAAGGCATTTGAGTATGCAGATTTTGATAAATTCGATAGAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004619 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009506 GO:0009507 GO:0009536 GO:0009555 GO:0009628 GO:0009987 GO:0010035 GO:0010038 GO:0010118 GO:0016020 GO:0016853 GO:0016866 GO:0016868 GO:0030054 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046537 GO:0046686 GO:0048046 GO:0048229 GO:0048856 GO:0050896 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00010 ko00260 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00010 map00260 map00680 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Metalloenzyme iPGM_N

Protein Analysis

99

Amino Acids

11.16

Weight (kDa)

4.79

Isoelectric Point (pI)

18.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
iPGM_N	PF06415	7 - 98	7.1e-21	BPG-independent PGAM N-terminus (iPGM_N)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0024889)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0154991
rosa_multiflora	Rmu_sc0033456.1_g000001
rosa_samantha	Rh6AG418100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	80, 284
AfaI	GTAC	1 cut(s)	15
AgsI	TTSAA	2 cut(s)	98, 223
AluBI	AGCT	1 cut(s)	101
AluI	AGCT	1 cut(s)	101
AoxI	GGCC	1 cut(s)	187
ApaI	GGGCCC	1 cut(s)	191
ApeKI	GCWGC	1 cut(s)	251
ApoI	RAATTY	2 cut(s)	80, 284
AspS9I	GGNCC	2 cut(s)	187, 188
AsuHPI	GGTGA	2 cut(s)	77, 215
BaeGI	GKGCMC	1 cut(s)	191
BanII	GRGCYC	1 cut(s)	191
BbvI	GCAGC	1 cut(s)	238
BccI	CCATC	2 cut(s)	39, 194
BisI	GCNGC	1 cut(s)	252
BlsI	GCNGC	1 cut(s)	253
BmgT120I	GGNCC	2 cut(s)	187, 188
BmiI	GGNNCC	1 cut(s)	189
BmsI	GCATC	2 cut(s)	40, 196
Bpu10I	CCTNAGC	1 cut(s)	255
Bse1I	ACTGG	2 cut(s)	29, 139
BseGI	GGATG	2 cut(s)	50, 55
BseNI	ACTGG	2 cut(s)	29, 139
BseSI	GKGCMC	1 cut(s)	191
BseXI	GCAGC	1 cut(s)	238
BshFI	GGCC	1 cut(s)	189
BsmI	GAATGC	1 cut(s)	94
BsnI	GGCC	1 cut(s)	189
Bsp120I	GGGCCC	1 cut(s)	187
Bsp1286I	GDGCHC	1 cut(s)	191
Bsp1407I	TGTACA	1 cut(s)	13
Bsp143I	GATC	1 cut(s)	235
BspANI	GGCC	1 cut(s)	189
BspLI	GGNNCC	1 cut(s)	189
BsrGI	TGTACA	1 cut(s)	13
BsrI	ACTGG	2 cut(s)	29, 139
BssMI	GATC	1 cut(s)	235
Bst4CI	ACNGT	1 cut(s)	173
BstAUI	TGTACA	1 cut(s)	13
BstDEI	CTNAG	1 cut(s)	255
BstF5I	GGATG	2 cut(s)	50, 55
BstKTI	GATC	1 cut(s)	238
BstMBI	GATC	1 cut(s)	235
BstMWI	GCNNNNNNNGC	2 cut(s)	98, 257
BstSLI	GKGCMC	1 cut(s)	191
BstV1I	GCAGC	1 cut(s)	238
BstXI	CCANNNNNNTGG	1 cut(s)	62
BsuRI	GGCC	1 cut(s)	189
BtsCI	GGATG	2 cut(s)	50, 55
BtsIMutI	CAGTG	1 cut(s)	178
Cfr13I	GGNCC	2 cut(s)	187, 188
Csp6I	GTAC	1 cut(s)	14
CviAII	CATG	1 cut(s)	247
CviJI	RGCY	5 cut(s)	71, 101, 181, 189, 251
CviKI_1	RGCY	5 cut(s)	71, 101, 181, 189, 251
CviQI	GTAC	1 cut(s)	14
DdeI	CTNAG	1 cut(s)	255
DpnI	GATC	1 cut(s)	237
DpnII	GATC	1 cut(s)	235
Eco24I	GRGCYC	1 cut(s)	191
EcoT38I	GRGCYC	1 cut(s)	191
FaeI	CATG	1 cut(s)	250
FaiI	YATR	4 cut(s)	78, 242, 248, 270
FatI	CATG	1 cut(s)	246
Fnu4HI	GCNGC	1 cut(s)	252
FokI	GGATG	2 cut(s)	57, 62
FriOI	GRGCYC	1 cut(s)	191
Fsp4HI	GCNGC	1 cut(s)	252
GluI	GCNGC	1 cut(s)	252
HaeIII	GGCC	1 cut(s)	189
Hin1II	CATG	1 cut(s)	250
HphI	GGTGA	2 cut(s)	77, 215
Hpy188I	TCNGA	1 cut(s)	230
Hpy188III	TCNNGA	1 cut(s)	106
HpyCH4III	ACNGT	1 cut(s)	173
HpyCH4V	TGCA	1 cut(s)	272
HpyF10VI	GCNNNNNNNGC	2 cut(s)	98, 257
HpyF3I	CTNAG	1 cut(s)	255
Hsp92II	CATG	1 cut(s)	250
Kzo9I	GATC	1 cut(s)	235
LpnPI	CCDG	3 cut(s)	10, 152, 195
Lsp1109I	GCAGC	1 cut(s)	238
LweI	GCATC	2 cut(s)	40, 196
MaeIII	GTNAC	1 cut(s)	214
MalI	GATC	1 cut(s)	237
MboI	GATC	1 cut(s)	235
MhlI	GDGCHC	1 cut(s)	191
MluCI	AATT	2 cut(s)	80, 284
MnlI	CCTC	2 cut(s)	35, 159
MseI	TTAA	1 cut(s)	84
Mva1269I	GAATGC	1 cut(s)	94
MwoI	GCNNNNNNNGC	2 cut(s)	98, 257
NdeII	GATC	1 cut(s)	235
NlaIII	CATG	1 cut(s)	250
NlaIV	GGNNCC	1 cut(s)	189
PctI	GAATGC	1 cut(s)	94
PkrI	GCNGC	1 cut(s)	253
PspN4I	GGNNCC	1 cut(s)	189
PspOMI	GGGCCC	1 cut(s)	187
PspPI	GGNCC	2 cut(s)	187, 188
RsaI	GTAC	1 cut(s)	15
RsaNI	GTAC	1 cut(s)	14
SaqAI	TTAA	1 cut(s)	84
SatI	GCNGC	1 cut(s)	252
Sau3AI	GATC	1 cut(s)	235
Sau96I	GGNCC	2 cut(s)	187, 188
SduI	GDGCHC	1 cut(s)	191
SetI	ASST	2 cut(s)	103, 151
SfaNI	GCATC	2 cut(s)	40, 196
SgeI	CNNG	9 cut(s)	37, 53, 68, 74, 118, 151, 194, 242, 259
Sse9I	AATT	2 cut(s)	80, 284
TaaI	ACNGT	1 cut(s)	173
TaqI	TCGA	1 cut(s)	288
TasI	AATT	2 cut(s)	80, 284
TatI	WGTACW	1 cut(s)	13
Tru1I	TTAA	1 cut(s)	84
Tru9I	TTAA	1 cut(s)	84
TscAI	CASTG	1 cut(s)	178
TseI	GCWGC	1 cut(s)	251
TspRI	CASTG	1 cut(s)	178
XapI	RAATTY	2 cut(s)	80, 284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.