RchiOBHm_Chr2g0158241

HAUS augmin-like complex subunit 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0022688
Physical Location & Seq
Reverse (-)
74614374 .. 74615055
682 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 207 bp
ATGCTGTTTTGTGATCGTATCATTGCTCGTCTCCAACAACCATATTCACTCGATTGTATTCCAGTGGAAGCAGAGTATCAGAAACAATTCTCTGAATTACTGATGAAGGCTGCTAGTGATTATGGAGCATTAACAGCTTCAGTTGCCGATTTCCAGTGGAGCCAGACATTTAAGGAGCCTCCTTCAGTATGGGGGGTATGTTTGTAG

Protein Analysis

68

Amino Acids

7.74

Weight (kDa)

4.51

Isoelectric Point (pI)

37.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HAUS2 PF15003 5 - 67 1.4e-30 HAUS augmin-like complex subunit 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0022688)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0158241
rosa_laevigata RLG00000021070
rosa_multiflora Rmu_sc0003430.1_g000013
rosa_samantha Rh2CG516700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 2 cut(s) 123, 168
AluBI AGCT 1 cut(s) 137
AluI AGCT 1 cut(s) 137
Alw26I GTCTC 1 cut(s) 35
ApeKI GCWGC 1 cut(s) 110
Asp700I GAANNNNTTC 1 cut(s) 86
BbvI GCAGC 1 cut(s) 97
BcoDI GTCTC 1 cut(s) 35
BfaI CTAG 1 cut(s) 114
BisI GCNGC 1 cut(s) 111
BlsI GCNGC 1 cut(s) 112
BmiI GGNNCC 2 cut(s) 161, 177
Bse1I ACTGG 2 cut(s) 62, 154
Bse3DI GCAATG 1 cut(s) 21
BseMI GCAATG 1 cut(s) 21
BseNI ACTGG 2 cut(s) 62, 154
BseXI GCAGC 1 cut(s) 97
BsmAI GTCTC 1 cut(s) 35
BsmBI CGTCTC 1 cut(s) 35
Bsp143I GATC 1 cut(s) 13
BspLI GGNNCC 2 cut(s) 161, 177
BsrDI GCAATG 1 cut(s) 21
BsrI ACTGG 2 cut(s) 62, 154
BssMI GATC 1 cut(s) 13
BstKTI GATC 1 cut(s) 16
BstMAI GTCTC 1 cut(s) 35
BstMBI GATC 1 cut(s) 13
BstMWI GCNNNNNNNGC 2 cut(s) 134, 143
BstV1I GCAGC 1 cut(s) 97
BtsIMutI CAGTG 2 cut(s) 69, 161
CviJI RGCY 4 cut(s) 110, 137, 162, 178
CviKI_1 RGCY 4 cut(s) 110, 137, 162, 178
DpnI GATC 1 cut(s) 15
DpnII GATC 1 cut(s) 13
Eco57I CTGAAG 2 cut(s) 123, 168
Esp3I CGTCTC 1 cut(s) 35
FaiI YATR 4 cut(s) 43, 123, 190, 199
Fnu4HI GCNGC 1 cut(s) 111
Fsp4HI GCNGC 1 cut(s) 111
FspBI CTAG 1 cut(s) 114
GluI GCNGC 1 cut(s) 111
Hpy188I TCNGA 2 cut(s) 81, 94
HpyAV CCTTC 2 cut(s) 100, 192
HpyF10VI GCNNNNNNNGC 2 cut(s) 134, 143
Kzo9I GATC 1 cut(s) 13
LmnI GCTCC 3 cut(s) 125, 159, 175
LpnPI CCDG 3 cut(s) 75, 167, 176
Lsp1109I GCAGC 1 cut(s) 97
MaeI CTAG 1 cut(s) 114
MalI GATC 1 cut(s) 15
MboI GATC 1 cut(s) 13
MluCI AATT 2 cut(s) 86, 95
MmeI TCCRAC 1 cut(s) 58
MnlI CCTC 1 cut(s) 189
MroXI GAANNNNTTC 1 cut(s) 86
MseI TTAA 2 cut(s) 131, 171
MwoI GCNNNNNNNGC 2 cut(s) 134, 143
NdeII GATC 1 cut(s) 13
NlaIV GGNNCC 2 cut(s) 161, 177
PdmI GAANNNNTTC 1 cut(s) 86
PkrI GCNGC 1 cut(s) 112
PspN4I GGNNCC 2 cut(s) 161, 177
SaqAI TTAA 2 cut(s) 131, 171
SatI GCNGC 1 cut(s) 111
Sau3AI GATC 1 cut(s) 13
SetI ASST 1 cut(s) 139
SgeI CNNG 6 cut(s) 39, 62, 74, 126, 166, 175
Sse9I AATT 2 cut(s) 86, 95
SspMI CTAG 1 cut(s) 114
TaqI TCGA 1 cut(s) 51
TasI AATT 2 cut(s) 86, 95
Tru1I TTAA 2 cut(s) 131, 171
Tru9I TTAA 2 cut(s) 131, 171
TscAI CASTG 2 cut(s) 69, 161
TseI GCWGC 1 cut(s) 110
TspDTI ATGAA 1 cut(s) 119
TspRI CASTG 2 cut(s) 69, 161
XmnI GAANNNNTTC 1 cut(s) 86
XspI CTAG 1 cut(s) 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.