Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0022688

Physical Location & Seq

Genomic Coordinates Reverse (-)

69158084 .. 69160943

Gene Structure 2860 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG516700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGATCACACAGGTATCTGTTTCGAAGAAGAGGGACTACTTTGTTGCAATTAGAAGAAGGTTGTATCTACTTCCTTATAACCTAGCAAAGGATCGTATCATTGCTCATCTCCAACAACCATATTCACTCGATTGTATTCCAGTGGAAGCAGAGTATCAGAAAGAATTCTCTGAATTACTGATGAAGGCTGCTAGTGATTATGGAGCATTAACAGCTTCAGTTGCCGATTTCCAGTGGAGCCAGACATTTAAGGAGCCTCCTTCAGTATGGGGGGAAATGCTTCGTCCAATTCCTGTTGCCTTAGCGTCATGCACCAGGTTTTTCGAAGCAATGTCTGCTATGAGGGAATCGTTTGCAACACTTCAACATCTTAGACCAAGGATTCCAGAAGAGTACCAGGGGCTCTATCAAGGATTACCACGATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0006996 GO:0007010 GO:0007017 GO:0007020 GO:0007049 GO:0008150 GO:0009987 GO:0016043 GO:0022402 GO:0022607 GO:0031109 GO:0032506 GO:0034622 GO:0043933 GO:0044085 GO:0046785 GO:0051258 GO:0051301 GO:0061640 GO:0065003 GO:0071840 GO:0097435 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAUS2

Protein Analysis

142

Amino Acids

16.47

Weight (kDa)

8.56

Isoelectric Point (pI)

49.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HAUS2	PF15003	29 - 120	5.3e-45	HAUS augmin-like complex subunit 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0022688)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0158241
rosa_laevigata	RLG00000021070
rosa_multiflora	Rmu_sc0003430.1_g000013
rosa_samantha	Rh2CG516700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	78
AclWI	GGATC	1 cut(s)	99
AcsI	RAATTY	1 cut(s)	164
AcuI	CTGAAG	2 cut(s)	201, 246
AfaI	GTAC	1 cut(s)	395
AfiI	CCNNNNNNNGG	1 cut(s)	88
AgsI	TTSAA	1 cut(s)	365
AjnI	CCWGG	2 cut(s)	314, 396
AluBI	AGCT	1 cut(s)	215
AluI	AGCT	1 cut(s)	215
AlwI	GGATC	1 cut(s)	99
ApeKI	GCWGC	1 cut(s)	188
ApoI	RAATTY	1 cut(s)	164
Asp700I	GAANNNNTTC	2 cut(s)	164, 279
AsuII	TTCGAA	2 cut(s)	23, 324
BaeI	ACNNNNGTAYC	1 cut(s)	30
BanII	GRGCYC	1 cut(s)	405
BarI	GAAGNNNNNNTAC	2 cut(s)	20, 52
BbvI	GCAGC	1 cut(s)	175
BciT130I	CCWGG	2 cut(s)	316, 398
BclI	TGATCA	1 cut(s)	3
BfaI	CTAG	2 cut(s)	83, 192
BisI	GCNGC	1 cut(s)	189
BlsI	GCNGC	1 cut(s)	190
Bme1390I	CCNGG	2 cut(s)	316, 398
BmiI	GGNNCC	2 cut(s)	239, 255
BmrFI	CCNGG	2 cut(s)	316, 398
Bpu10I	CCTNAGC	1 cut(s)	301
Bpu14I	TTCGAA	2 cut(s)	23, 324
BsaJI	CCNNGG	2 cut(s)	377, 397
Bsc4I	CCNNNNNNNGG	1 cut(s)	88
Bse1I	ACTGG	2 cut(s)	140, 232
Bse3DI	GCAATG	2 cut(s)	99, 336
BseBI	CCWGG	2 cut(s)	316, 398
BseDI	CCNNGG	2 cut(s)	377, 397
BseLI	CCNNNNNNNGG	1 cut(s)	88
BseMI	GCAATG	2 cut(s)	99, 336
BseNI	ACTGG	2 cut(s)	140, 232
BseXI	GCAGC	1 cut(s)	175
BslFI	GGGAC	1 cut(s)	47
BslI	CCNNNNNNNGG	1 cut(s)	88
BsmFI	GGGAC	1 cut(s)	47
Bsp119I	TTCGAA	2 cut(s)	23, 324
Bsp1286I	GDGCHC	1 cut(s)	405
Bsp143I	GATC	2 cut(s)	3, 91
BspLI	GGNNCC	2 cut(s)	239, 255
BspPI	GGATC	1 cut(s)	99
BspT104I	TTCGAA	2 cut(s)	23, 324
BsrDI	GCAATG	2 cut(s)	99, 336
BsrI	ACTGG	2 cut(s)	140, 232
BssECI	CCNNGG	2 cut(s)	377, 397
BssMI	GATC	2 cut(s)	3, 91
BssT1I	CCWWGG	1 cut(s)	377
Bst2UI	CCWGG	2 cut(s)	316, 398
Bst6I	CTCTTC	2 cut(s)	23, 384
BstAPI	GCANNNNNTGC	1 cut(s)	335
BstBI	TTCGAA	2 cut(s)	23, 324
BstDEI	CTNAG	2 cut(s)	301, 371
BstENI	CCTNNNNNAGG	1 cut(s)	86
BstKTI	GATC	2 cut(s)	6, 94
BstMBI	GATC	2 cut(s)	3, 91
BstMWI	GCNNNNNNNGC	3 cut(s)	212, 221, 335
BstNI	CCWGG	2 cut(s)	316, 398
BstSCI	CCNGG	2 cut(s)	314, 396
BstV1I	GCAGC	1 cut(s)	175
BtsIMutI	CAGTG	2 cut(s)	147, 239
CseI	GACGC	1 cut(s)	294
CsiI	ACCWGGT	1 cut(s)	314
Csp6I	GTAC	1 cut(s)	394
CviAII	CATG	1 cut(s)	309
CviJI	RGCY	5 cut(s)	188, 215, 240, 256, 403
CviKI_1	RGCY	5 cut(s)	188, 215, 240, 256, 403
CviQI	GTAC	1 cut(s)	394
DdeI	CTNAG	2 cut(s)	301, 371
DpnI	GATC	2 cut(s)	5, 93
DpnII	GATC	2 cut(s)	3, 91
Eam1104I	CTCTTC	2 cut(s)	23, 384
EarI	CTCTTC	2 cut(s)	23, 384
Eco130I	CCWWGG	1 cut(s)	377
Eco24I	GRGCYC	1 cut(s)	405
Eco57I	CTGAAG	2 cut(s)	201, 246
EcoNI	CCTNNNNNAGG	1 cut(s)	86
EcoRI	GAATTC	1 cut(s)	164
EcoRII	CCWGG	2 cut(s)	314, 396
EcoT14I	CCWWGG	1 cut(s)	377
EcoT38I	GRGCYC	1 cut(s)	405
ErhI	CCWWGG	1 cut(s)	377
FaeI	CATG	1 cut(s)	312
FaiI	YATR	6 cut(s)	78, 121, 201, 268, 310, 341
FaqI	GGGAC	1 cut(s)	47
FatI	CATG	1 cut(s)	308
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	1 cut(s)	189
FriOI	GRGCYC	1 cut(s)	405
Fsp4HI	GCNGC	1 cut(s)	189
FspBI	CTAG	2 cut(s)	83, 192
GluI	GCNGC	1 cut(s)	189
HgaI	GACGC	1 cut(s)	294
Hin1II	CATG	1 cut(s)	312
HinfI	GANTC	2 cut(s)	347, 382
Hpy188I	TCNGA	2 cut(s)	159, 172
Hpy188III	TCNNGA	1 cut(s)	386
HpyAV	CCTTC	3 cut(s)	51, 178, 270
HpyCH4V	TGCA	3 cut(s)	47, 312, 356
HpyF10VI	GCNNNNNNNGC	3 cut(s)	212, 221, 335
HpyF3I	CTNAG	2 cut(s)	301, 371
Hsp92II	CATG	1 cut(s)	312
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	2 cut(s)	3, 91
LmnI	GCTCC	3 cut(s)	203, 237, 253
LpnPI	CCDG	9 cut(s)	153, 245, 254, 301, 306, 328, 383, 399, 410
Lsp1109I	GCAGC	1 cut(s)	175
MabI	ACCWGGT	1 cut(s)	314
MaeI	CTAG	2 cut(s)	83, 192
MalI	GATC	2 cut(s)	5, 93
MboI	GATC	2 cut(s)	3, 91
MboII	GAAGA	4 cut(s)	37, 40, 66, 401
MhlI	GDGCHC	1 cut(s)	405
MluCI	AATT	4 cut(s)	48, 164, 173, 288
MmeI	TCCRAC	1 cut(s)	136
MnlI	CCTC	3 cut(s)	24, 267, 336
MroXI	GAANNNNTTC	2 cut(s)	164, 279
MseI	TTAA	3 cut(s)	209, 249, 427
MspR9I	CCNGG	2 cut(s)	316, 398
MvaI	CCWGG	2 cut(s)	316, 398
MwoI	GCNNNNNNNGC	3 cut(s)	212, 221, 335
NdeII	GATC	2 cut(s)	3, 91
NlaIII	CATG	1 cut(s)	312
NlaIV	GGNNCC	2 cut(s)	239, 255
NspV	TTCGAA	2 cut(s)	23, 324
PdmI	GAANNNNTTC	2 cut(s)	164, 279
PfeI	GAWTC	2 cut(s)	347, 382
PkrI	GCNGC	1 cut(s)	190
PsiI	TTATAA	1 cut(s)	78
Psp6I	CCWGG	2 cut(s)	314, 396
PspGI	CCWGG	2 cut(s)	314, 396
PspN4I	GGNNCC	2 cut(s)	239, 255
RsaI	GTAC	1 cut(s)	395
RsaNI	GTAC	1 cut(s)	394
SaqAI	TTAA	3 cut(s)	209, 249, 427
SatI	GCNGC	1 cut(s)	189
Sau3AI	GATC	2 cut(s)	3, 91
ScrFI	CCNGG	2 cut(s)	316, 398
SduI	GDGCHC	1 cut(s)	405
SetI	ASST	5 cut(s)	15, 62, 84, 217, 320
SexAI	ACCWGGT	1 cut(s)	314
SfuI	TTCGAA	2 cut(s)	23, 324
Sse9I	AATT	4 cut(s)	48, 164, 173, 288
SspMI	CTAG	2 cut(s)	83, 192
StyD4I	CCNGG	2 cut(s)	314, 396
StyI	CCWWGG	1 cut(s)	377
TaqI	TCGA	3 cut(s)	23, 129, 324
TasI	AATT	4 cut(s)	48, 164, 173, 288
TfiI	GAWTC	2 cut(s)	347, 382
Tru1I	TTAA	3 cut(s)	209, 249, 427
Tru9I	TTAA	3 cut(s)	209, 249, 427
TscAI	CASTG	2 cut(s)	147, 239
TseI	GCWGC	1 cut(s)	188
TspDTI	ATGAA	1 cut(s)	197
TspRI	CASTG	2 cut(s)	147, 239
XagI	CCTNNNNNAGG	1 cut(s)	86
XapI	RAATTY	1 cut(s)	164
XmnI	GAANNNNTTC	2 cut(s)	164, 279
XspI	CTAG	2 cut(s)	83, 192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.