Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003430.1

Orthogroup ID

OG0022688

Physical Location & Seq

Genomic Coordinates Forward (+)

55825 .. 58575

Gene Structure 2751 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003430.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

atggggactaatagtacctgggtggggaggaagcctttgaggctcataggaggcatgtctaacgctctctctattgcttcggatcttggtttctcagtcgctgctgctccgactccggatcgtatcattgctcgtctccaacaaccatattcactagattgcattccagtggaagcagggtatcaggctgctagtgattatggagcattaacagcatcagttgccgacttccagtggagccagatgtttaaggagcctccttcagtatgggggaccaaatgtgagcgtgctctttacatttccttcctccaggccccggccgaggaagtcttttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000281 GO:0000910 GO:0000911 GO:0006996 GO:0007010 GO:0007017 GO:0007020 GO:0007049 GO:0008150 GO:0009987 GO:0016043 GO:0022402 GO:0022607 GO:0031109 GO:0032506 GO:0034622 GO:0043933 GO:0044085 GO:0046785 GO:0051258 GO:0051301 GO:0061640 GO:0065003 GO:0071840 GO:0097435 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAUS2

Protein Analysis

111

Amino Acids

12.0

Weight (kDa)

4.89

Isoelectric Point (pI)

28.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022688)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0158241
rosa_laevigata	RLG00000021070
rosa_multiflora	Rmu_sc0003430.1_g000013
rosa_samantha	Rh2CG516700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	115
AclWI	GGATC	2 cut(s)	90, 126
AcoI	YGGCCR	1 cut(s)	318
AcuI	CTGAAG	1 cut(s)	246
AfaI	GTAC	1 cut(s)	16
AfiI	CCNNNNNNNGG	3 cut(s)	24, 316, 322
AjnI	CCWGG	2 cut(s)	17, 309
Alw21I	GWGCWC	1 cut(s)	292
Alw26I	GTCTC	1 cut(s)	140
AlwI	GGATC	2 cut(s)	90, 126
AlwNI	CAGNNNCTG	1 cut(s)	101
Aor13HI	TCCGGA	1 cut(s)	115
AoxI	GGCC	2 cut(s)	312, 318
ApeKI	GCWGC	3 cut(s)	101, 104, 188
AspS9I	GGNCC	2 cut(s)	273, 313
AsuC2I	CCSGG	1 cut(s)	317
AvaII	GGWCC	1 cut(s)	273
Bbv12I	GWGCWC	1 cut(s)	292
BbvI	GCAGC	3 cut(s)	88, 91, 175
BciT130I	CCWGG	2 cut(s)	19, 311
BcnI	CCSGG	1 cut(s)	317
BcoDI	GTCTC	1 cut(s)	140
BfaI	CTAG	2 cut(s)	155, 192
BglI	GCCNNNNNGGC	1 cut(s)	40
BisI	GCNGC	3 cut(s)	102, 105, 189
BlsI	GCNGC	3 cut(s)	103, 106, 190
Bme1390I	CCNGG	3 cut(s)	19, 311, 317
Bme18I	GGWCC	1 cut(s)	273
BmgT120I	GGNCC	2 cut(s)	273, 313
BmiI	GGNNCC	4 cut(s)	239, 255, 274, 315
BmrFI	CCNGG	3 cut(s)	19, 311, 317
BmsI	GCATC	1 cut(s)	224
BpmI	CTGGAG	1 cut(s)	293
BpuMI	CCSGG	1 cut(s)	317
BsaJI	CCNNGG	3 cut(s)	18, 315, 321
BsaWI	WCCGGW	1 cut(s)	115
Bsc4I	CCNNNNNNNGG	3 cut(s)	24, 316, 322
Bse1I	ACTGG	2 cut(s)	167, 232
Bse3DI	GCAATG	1 cut(s)	126
BseAI	TCCGGA	1 cut(s)	115
BseBI	CCWGG	2 cut(s)	19, 311
BseDI	CCNNGG	3 cut(s)	18, 315, 321
BseLI	CCNNNNNNNGG	3 cut(s)	24, 316, 322
BseMI	GCAATG	1 cut(s)	126
BseMII	CTCAG	1 cut(s)	108
BseNI	ACTGG	2 cut(s)	167, 232
BseX3I	CGGCCG	1 cut(s)	318
BseXI	GCAGC	3 cut(s)	88, 91, 175
Bsh1285I	CGRYCG	1 cut(s)	321
BshFI	GGCC	2 cut(s)	314, 320
BsiEI	CGRYCG	1 cut(s)	321
BsiHKAI	GWGCWC	1 cut(s)	292
BsiSI	CCGG	2 cut(s)	116, 317
BslFI	GGGAC	2 cut(s)	19, 286
BslI	CCNNNNNNNGG	3 cut(s)	24, 316, 322
BsmAI	GTCTC	1 cut(s)	140
BsmBI	CGTCTC	1 cut(s)	140
BsmFI	GGGAC	2 cut(s)	19, 286
BsmI	GAATGC	1 cut(s)	162
BsnI	GGCC	2 cut(s)	314, 320
Bsp1286I	GDGCHC	1 cut(s)	292
Bsp13I	TCCGGA	1 cut(s)	115
Bsp143I	GATC	2 cut(s)	82, 118
BspANI	GGCC	2 cut(s)	314, 320
BspCNI	CTCAG	1 cut(s)	107
BspEI	TCCGGA	1 cut(s)	115
BspLI	GGNNCC	4 cut(s)	239, 255, 274, 315
BspPI	GGATC	2 cut(s)	90, 126
BsrDI	GCAATG	1 cut(s)	126
BsrI	ACTGG	2 cut(s)	167, 232
BssECI	CCNNGG	3 cut(s)	18, 315, 321
BssMI	GATC	2 cut(s)	82, 118
Bst2UI	CCWGG	2 cut(s)	19, 311
BstAPI	GCANNNNNTGC	1 cut(s)	221
BstC8I	GCNNGC	1 cut(s)	288
BstDEI	CTNAG	1 cut(s)	94
BstKTI	GATC	2 cut(s)	85, 121
BstMAI	GTCTC	1 cut(s)	140
BstMBI	GATC	2 cut(s)	82, 118
BstMCI	CGRYCG	1 cut(s)	321
BstMWI	GCNNNNNNNGC	3 cut(s)	40, 212, 221
BstNI	CCWGG	2 cut(s)	19, 311
BstNSI	RCATGY	1 cut(s)	58
BstSCI	CCNGG	3 cut(s)	17, 309, 315
BstV1I	GCAGC	3 cut(s)	88, 91, 175
BstX2I	RGATCY	1 cut(s)	82
BstYI	RGATCY	1 cut(s)	82
BstZI	CGGCCG	1 cut(s)	318
BsuRI	GGCC	2 cut(s)	314, 320
BtsIMutI	CAGTG	2 cut(s)	174, 239
Cac8I	GCNNGC	1 cut(s)	288
CaiI	CAGNNNCTG	1 cut(s)	101
Cfr13I	GGNCC	2 cut(s)	273, 313
Csp6I	GTAC	1 cut(s)	15
CviAII	CATG	1 cut(s)	55
CviJI	RGCY	7 cut(s)	34, 43, 188, 240, 256, 314, 320
CviKI_1	RGCY	7 cut(s)	34, 43, 188, 240, 256, 314, 320
CviQI	GTAC	1 cut(s)	15
DdeI	CTNAG	1 cut(s)	94
DpnI	GATC	2 cut(s)	84, 120
DpnII	GATC	2 cut(s)	82, 118
EaeI	YGGCCR	1 cut(s)	318
EagI	CGGCCG	1 cut(s)	318
EclXI	CGGCCG	1 cut(s)	318
Eco47I	GGWCC	1 cut(s)	273
Eco52I	CGGCCG	1 cut(s)	318
Eco57I	CTGAAG	1 cut(s)	246
EcoO109I	RGGNCCY	1 cut(s)	313
EcoRII	CCWGG	2 cut(s)	17, 309
Esp3I	CGTCTC	1 cut(s)	140
FaeI	CATG	1 cut(s)	58
FaiI	YATR	5 cut(s)	47, 56, 148, 201, 268
FaqI	GGGAC	2 cut(s)	19, 286
FatI	CATG	1 cut(s)	54
Fnu4HI	GCNGC	3 cut(s)	102, 105, 189
Fsp4HI	GCNGC	3 cut(s)	102, 105, 189
FspBI	CTAG	2 cut(s)	155, 192
GluI	GCNGC	3 cut(s)	102, 105, 189
GsuI	CTGGAG	1 cut(s)	293
HaeIII	GGCC	2 cut(s)	314, 320
HapII	CCGG	2 cut(s)	116, 317
Hin1II	CATG	1 cut(s)	58
HinfI	GANTC	1 cut(s)	112
HpaII	CCGG	2 cut(s)	116, 317
Hpy188I	TCNGA	2 cut(s)	82, 111
Hpy188III	TCNNGA	1 cut(s)	116
HpyAV	CCTTC	2 cut(s)	270, 313
HpyCH4V	TGCA	1 cut(s)	162
HpyF10VI	GCNNNNNNNGC	3 cut(s)	40, 212, 221
HpyF3I	CTNAG	1 cut(s)	94
Hsp92II	CATG	1 cut(s)	58
Kpn2I	TCCGGA	1 cut(s)	115
Kzo9I	GATC	2 cut(s)	82, 118
LmnI	GCTCC	4 cut(s)	112, 203, 237, 253
Lsp1109I	GCAGC	3 cut(s)	88, 91, 175
LweI	GCATC	1 cut(s)	224
MaeI	CTAG	2 cut(s)	155, 192
MalI	GATC	2 cut(s)	84, 120
MboI	GATC	2 cut(s)	82, 118
MflI	RGATCY	1 cut(s)	82
MhlI	GDGCHC	1 cut(s)	292
MlyI	GAGTC	1 cut(s)	106
MmeI	TCCRAC	2 cut(s)	134, 163
MnlI	CCTC	6 cut(s)	21, 33, 44, 267, 316, 317
MroI	TCCGGA	1 cut(s)	115
MseI	TTAA	3 cut(s)	209, 249, 334
MslI	CAYNNNNRTG	1 cut(s)	167
MspI	CCGG	2 cut(s)	116, 317
MspR9I	CCNGG	3 cut(s)	19, 311, 317
Mva1269I	GAATGC	1 cut(s)	162
MvaI	CCWGG	2 cut(s)	19, 311
MwoI	GCNNNNNNNGC	3 cut(s)	40, 212, 221
NciI	CCSGG	1 cut(s)	317
NdeII	GATC	2 cut(s)	82, 118
NlaIII	CATG	1 cut(s)	58
NlaIV	GGNNCC	4 cut(s)	239, 255, 274, 315
NspI	RCATGY	1 cut(s)	58
PctI	GAATGC	1 cut(s)	162
PkrI	GCNGC	3 cut(s)	103, 106, 190
PleI	GAGTC	1 cut(s)	106
PpsI	GAGTC	1 cut(s)	106
Psp6I	CCWGG	2 cut(s)	17, 309
PspGI	CCWGG	2 cut(s)	17, 309
PspN4I	GGNNCC	4 cut(s)	239, 255, 274, 315
PspPI	GGNCC	2 cut(s)	273, 313
PstNI	CAGNNNCTG	1 cut(s)	101
PsuI	RGATCY	1 cut(s)	82
RsaI	GTAC	1 cut(s)	16
RsaNI	GTAC	1 cut(s)	15
RseI	CAYNNNNRTG	1 cut(s)	167
SaqAI	TTAA	3 cut(s)	209, 249, 334
SatI	GCNGC	3 cut(s)	102, 105, 189
Sau3AI	GATC	2 cut(s)	82, 118
Sau96I	GGNCC	2 cut(s)	273, 313
SchI	GAGTC	1 cut(s)	106
ScrFI	CCNGG	3 cut(s)	19, 311, 317
SduI	GDGCHC	1 cut(s)	292
SetI	ASST	1 cut(s)	20
SfaNI	GCATC	1 cut(s)	224
SinI	GGWCC	1 cut(s)	273
SmiMI	CAYNNNNRTG	1 cut(s)	167
SspMI	CTAG	2 cut(s)	155, 192
StyD4I	CCNGG	3 cut(s)	17, 309, 315
Tru1I	TTAA	3 cut(s)	209, 249, 334
Tru9I	TTAA	3 cut(s)	209, 249, 334
TscAI	CASTG	2 cut(s)	174, 239
TseI	GCWGC	3 cut(s)	101, 104, 188
TspRI	CASTG	2 cut(s)	174, 239
VpaK11BI	GGWCC	1 cut(s)	273
XceI	RCATGY	1 cut(s)	58
XspI	CTAG	2 cut(s)	155, 192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.