Pentatricopeptide repeat-containing protein At5g50390
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr2g0168261 |
| rosa_laevigata | RLG00000021760 |
| rosa_multiflora | Rmu_sc0003354.1_g000002 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 153 |
| AcsI | RAATTY | 1 cut(s) | 238 |
| AfaI | GTAC | 2 cut(s) | 49, 152 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 220 |
| AgsI | TTSAA | 1 cut(s) | 85 |
| AluBI | AGCT | 1 cut(s) | 81 |
| AluI | AGCT | 1 cut(s) | 81 |
| AlwI | GGATC | 1 cut(s) | 153 |
| ApoI | RAATTY | 1 cut(s) | 238 |
| AsuHPI | GGTGA | 1 cut(s) | 38 |
| BccI | CCATC | 1 cut(s) | 331 |
| BceAI | ACGGC | 1 cut(s) | 282 |
| BfaI | CTAG | 1 cut(s) | 21 |
| BmiI | GGNNCC | 1 cut(s) | 296 |
| BmsI | GCATC | 1 cut(s) | 46 |
| Bsa29I | ATCGAT | 1 cut(s) | 89 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 220 |
| BseCI | ATCGAT | 1 cut(s) | 89 |
| BseGI | GGATG | 1 cut(s) | 198 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 220 |
| BseMII | CTCAG | 1 cut(s) | 222 |
| BseRI | GAGGAG | 2 cut(s) | 111, 340 |
| BshVI | ATCGAT | 1 cut(s) | 89 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 220 |
| Bsp143I | GATC | 1 cut(s) | 145 |
| BspCNI | CTCAG | 1 cut(s) | 223 |
| BspDI | ATCGAT | 1 cut(s) | 89 |
| BspLI | GGNNCC | 1 cut(s) | 296 |
| BspPI | GGATC | 1 cut(s) | 153 |
| BssMI | GATC | 1 cut(s) | 145 |
| Bst6I | CTCTTC | 1 cut(s) | 98 |
| BstC8I | GCNNGC | 1 cut(s) | 208 |
| BstDEI | CTNAG | 1 cut(s) | 231 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 218 |
| BstF5I | GGATG | 1 cut(s) | 198 |
| BstKTI | GATC | 1 cut(s) | 148 |
| BstMBI | GATC | 1 cut(s) | 145 |
| BstNSI | RCATGY | 1 cut(s) | 182 |
| Bsu15I | ATCGAT | 1 cut(s) | 89 |
| BsuTUI | ATCGAT | 1 cut(s) | 89 |
| BtsCI | GGATG | 1 cut(s) | 198 |
| Cac8I | GCNNGC | 1 cut(s) | 208 |
| ClaI | ATCGAT | 1 cut(s) | 89 |
| Csp6I | GTAC | 2 cut(s) | 48, 151 |
| CviAII | CATG | 4 cut(s) | 154, 179, 203, 291 |
| CviJI | RGCY | 2 cut(s) | 81, 297 |
| CviKI_1 | RGCY | 2 cut(s) | 81, 297 |
| CviQI | GTAC | 2 cut(s) | 48, 151 |
| DdeI | CTNAG | 1 cut(s) | 231 |
| DpnI | GATC | 1 cut(s) | 147 |
| DpnII | GATC | 1 cut(s) | 145 |
| Eam1104I | CTCTTC | 1 cut(s) | 98 |
| EarI | CTCTTC | 1 cut(s) | 98 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 218 |
| EcoT22I | ATGCAT | 1 cut(s) | 180 |
| FaeI | CATG | 4 cut(s) | 157, 182, 206, 294 |
| FaiI | YATR | 9 cut(s) | 33, 54, 120, 122, 155, 176, 180, 204, 292 |
| FatI | CATG | 4 cut(s) | 153, 178, 202, 290 |
| FokI | GGATG | 1 cut(s) | 205 |
| FspBI | CTAG | 1 cut(s) | 21 |
| Hin1II | CATG | 4 cut(s) | 157, 182, 206, 294 |
| HinfI | GANTC | 3 cut(s) | 17, 199, 343 |
| HphI | GGTGA | 1 cut(s) | 38 |
| Hpy188I | TCNGA | 1 cut(s) | 336 |
| Hpy188III | TCNNGA | 1 cut(s) | 21 |
| HpyCH4V | TGCA | 2 cut(s) | 178, 206 |
| HpyF3I | CTNAG | 1 cut(s) | 231 |
| Hsp92II | CATG | 4 cut(s) | 157, 182, 206, 294 |
| Kzo9I | GATC | 1 cut(s) | 145 |
| LmnI | GCTCC | 1 cut(s) | 294 |
| LpnPI | CCDG | 3 cut(s) | 148, 227, 243 |
| LweI | GCATC | 1 cut(s) | 46 |
| MaeI | CTAG | 1 cut(s) | 21 |
| MalI | GATC | 1 cut(s) | 147 |
| MboI | GATC | 1 cut(s) | 145 |
| MboII | GAAGA | 1 cut(s) | 115 |
| MluCI | AATT | 2 cut(s) | 238, 261 |
| MlyI | GAGTC | 1 cut(s) | 352 |
| MmeI | TCCRAC | 1 cut(s) | 123 |
| MnlI | CCTC | 7 cut(s) | 17, 89, 99, 150, 214, 318, 341 |
| Mph1103I | ATGCAT | 1 cut(s) | 180 |
| NdeII | GATC | 1 cut(s) | 145 |
| NlaIII | CATG | 4 cut(s) | 157, 182, 206, 294 |
| NlaIV | GGNNCC | 1 cut(s) | 296 |
| NsiI | ATGCAT | 1 cut(s) | 180 |
| NspI | RCATGY | 1 cut(s) | 182 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 254 |
| PfeI | GAWTC | 2 cut(s) | 17, 199 |
| PleI | GAGTC | 1 cut(s) | 351 |
| PpsI | GAGTC | 1 cut(s) | 351 |
| PspN4I | GGNNCC | 1 cut(s) | 296 |
| RsaI | GTAC | 2 cut(s) | 49, 152 |
| RsaNI | GTAC | 2 cut(s) | 48, 151 |
| Sau3AI | GATC | 1 cut(s) | 145 |
| SchI | GAGTC | 1 cut(s) | 352 |
| SetI | ASST | 3 cut(s) | 28, 83, 216 |
| SfaNI | GCATC | 1 cut(s) | 46 |
| Sse9I | AATT | 2 cut(s) | 238, 261 |
| SspMI | CTAG | 1 cut(s) | 21 |
| TaqI | TCGA | 2 cut(s) | 89, 346 |
| TasI | AATT | 2 cut(s) | 238, 261 |
| TatI | WGTACW | 1 cut(s) | 150 |
| TfiI | GAWTC | 2 cut(s) | 17, 199 |
| TspDTI | ATGAA | 3 cut(s) | 48, 191, 279 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 218 |
| XapI | RAATTY | 1 cut(s) | 238 |
| XbaI | TCTAGA | 1 cut(s) | 20 |
| XceI | RCATGY | 1 cut(s) | 182 |
| XspI | CTAG | 1 cut(s) | 21 |
| Zsp2I | ATGCAT | 1 cut(s) | 180 |