Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003354.1

Orthogroup ID

OG0024890

Physical Location & Seq

Genomic Coordinates Forward (+)

10430 .. 11040

Gene Structure 611 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003354.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

atggaggttcctctgttaaggtgttgttcatatgtggagcaacagctgaagccccggcccaggcccatacccgccaaaattgaggttaaggaggaaccaaaggtcgcacctttggaaccagaagaggcccagattgcagcacccagttctgggatttgtagtcagattaagaagttggttttgtataagaggtatagggaagcacttgaaatgtttgagtttttggaatctagaggtgggtatgaagtgggtagtagtacttatgatgctttagtgagtgcttgtattagcttgaaatcaattggaggagtgaagagggtgtttggttatatgattggtaatgggtttgagttggatcagtatatgaggaccagtgttttgcttatgcacgtgaaatgtgggatgatgattgatacacgccacctgtttgaggaaatgcctgagagaaattcggtttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

152

Amino Acids

17.24

Weight (kDa)

6.74

Isoelectric Point (pI)

53.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024890)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0168261
rosa_laevigata	RLG00000021760
rosa_multiflora	Rmu_sc0003354.1_g000002

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	72
AclWI	GGATC	1 cut(s)	363
AcsI	RAATTY	1 cut(s)	448
AcuI	CTGAAG	1 cut(s)	68
AcvI	CACGTG	1 cut(s)	391
AfaI	GTAC	1 cut(s)	259
AfiI	CCNNNNNNNGG	4 cut(s)	60, 149, 150, 430
AgsI	TTSAA	2 cut(s)	209, 295
AjnI	CCWGG	1 cut(s)	59
AluBI	AGCT	2 cut(s)	46, 291
AluI	AGCT	2 cut(s)	46, 291
AlwI	GGATC	1 cut(s)	363
AoxI	GGCC	3 cut(s)	56, 62, 126
ApeKI	GCWGC	1 cut(s)	137
ApoI	RAATTY	1 cut(s)	448
ArsI	GACNNNNNNTTYG	2 cut(s)	361, 393
AspS9I	GGNCC	4 cut(s)	57, 63, 127, 369
AsuC2I	CCSGG	1 cut(s)	55
AvaII	GGWCC	1 cut(s)	369
BbrPI	CACGTG	1 cut(s)	391
BbvI	GCAGC	1 cut(s)	149
BciT130I	CCWGG	1 cut(s)	61
BcnI	CCSGG	1 cut(s)	55
BfaI	CTAG	1 cut(s)	231
BisI	GCNGC	1 cut(s)	138
BlsI	GCNGC	1 cut(s)	139
BmcAI	AGTACT	1 cut(s)	259
Bme1390I	CCNGG	2 cut(s)	55, 61
Bme18I	GGWCC	1 cut(s)	369
BmgT120I	GGNCC	4 cut(s)	57, 63, 127, 369
BmiI	GGNNCC	3 cut(s)	9, 96, 117
BmrFI	CCNGG	2 cut(s)	55, 61
BmrI	ACTGGG	1 cut(s)	138
BmsI	GCATC	1 cut(s)	256
BmuI	ACTGGG	1 cut(s)	138
BpuMI	CCSGG	1 cut(s)	55
BsaAI	YACGTR	1 cut(s)	391
BsaJI	CCNNGG	2 cut(s)	53, 59
Bsc4I	CCNNNNNNNGG	4 cut(s)	60, 149, 150, 430
Bse1I	ACTGG	2 cut(s)	144, 372
BseBI	CCWGG	1 cut(s)	61
BseDI	CCNNGG	2 cut(s)	53, 59
BseGI	GGATG	1 cut(s)	408
BseLI	CCNNNNNNNGG	4 cut(s)	60, 149, 150, 430
BseMII	CTCAG	1 cut(s)	432
BseNI	ACTGG	2 cut(s)	144, 372
BseRI	GAGGAG	1 cut(s)	321
BseXI	GCAGC	1 cut(s)	149
BshFI	GGCC	3 cut(s)	58, 64, 128
BsiSI	CCGG	1 cut(s)	55
BslI	CCNNNNNNNGG	4 cut(s)	60, 149, 150, 430
BsnI	GGCC	3 cut(s)	58, 64, 128
Bsp143I	GATC	1 cut(s)	355
BspACI	CCGC	1 cut(s)	72
BspANI	GGCC	3 cut(s)	58, 64, 128
BspCNI	CTCAG	1 cut(s)	433
BspLI	GGNNCC	3 cut(s)	9, 96, 117
BspPI	GGATC	1 cut(s)	363
BsrI	ACTGG	2 cut(s)	144, 372
BssECI	CCNNGG	2 cut(s)	53, 59
BssMI	GATC	1 cut(s)	355
Bst2UI	CCWGG	1 cut(s)	61
Bst6I	CTCTTC	2 cut(s)	117, 308
BstBAI	YACGTR	1 cut(s)	391
BstDEI	CTNAG	1 cut(s)	441
BstENI	CCTNNNNNAGG	1 cut(s)	428
BstF5I	GGATG	1 cut(s)	408
BstKTI	GATC	1 cut(s)	358
BstMBI	GATC	1 cut(s)	355
BstMWI	GCNNNNNNNGC	1 cut(s)	134
BstNI	CCWGG	1 cut(s)	61
BstSCI	CCNGG	2 cut(s)	53, 59
BstV1I	GCAGC	1 cut(s)	149
BsuRI	GGCC	3 cut(s)	58, 64, 128
BtsCI	GGATG	1 cut(s)	408
BtsIMutI	CAGTG	1 cut(s)	379
Cfr13I	GGNCC	4 cut(s)	57, 63, 127, 369
Csp6I	GTAC	1 cut(s)	258
CviJI	RGCY	6 cut(s)	46, 52, 58, 64, 128, 291
CviKI_1	RGCY	6 cut(s)	46, 52, 58, 64, 128, 291
CviQI	GTAC	1 cut(s)	258
DdeI	CTNAG	1 cut(s)	441
DpnI	GATC	1 cut(s)	357
DpnII	GATC	1 cut(s)	355
Eam1104I	CTCTTC	2 cut(s)	117, 308
EarI	CTCTTC	2 cut(s)	117, 308
Eco47I	GGWCC	1 cut(s)	369
Eco57I	CTGAAG	1 cut(s)	68
Eco72I	CACGTG	1 cut(s)	391
EcoNI	CCTNNNNNAGG	1 cut(s)	428
EcoRII	CCWGG	1 cut(s)	59
FauI	CCCGC	1 cut(s)	79
FauNDI	CATATG	1 cut(s)	31
Fnu4HI	GCNGC	1 cut(s)	138
FokI	GGATG	1 cut(s)	415
Fsp4HI	GCNGC	1 cut(s)	138
FspBI	CTAG	1 cut(s)	231
GluI	GCNGC	1 cut(s)	138
HaeIII	GGCC	3 cut(s)	58, 64, 128
HapII	CCGG	1 cut(s)	55
HinfI	GANTC	1 cut(s)	227
HpaII	CCGG	1 cut(s)	55
Hpy188I	TCNGA	1 cut(s)	165
Hpy188III	TCNNGA	1 cut(s)	231
HpyCH4IV	ACGT	1 cut(s)	390
HpyCH4V	TGCA	2 cut(s)	137, 388
HpyF10VI	GCNNNNNNNGC	1 cut(s)	134
HpyF3I	CTNAG	1 cut(s)	441
HpySE526I	ACGT	1 cut(s)	390
Kzo9I	GATC	1 cut(s)	355
LmnI	GCTCC	1 cut(s)	37
Lsp1109I	GCAGC	1 cut(s)	149
LweI	GCATC	1 cut(s)	256
MaeI	CTAG	1 cut(s)	231
MaeII	ACGT	1 cut(s)	390
MalI	GATC	1 cut(s)	357
MboI	GATC	1 cut(s)	355
MboII	GAAGA	2 cut(s)	134, 325
MfeI	CAATTG	1 cut(s)	300
MluCI	AATT	3 cut(s)	78, 300, 448
MmeI	TCCRAC	1 cut(s)	333
MseI	TTAA	3 cut(s)	17, 87, 168
MspA1I	CMGCKG	1 cut(s)	46
MspI	CCGG	1 cut(s)	55
MspR9I	CCNGG	2 cut(s)	55, 61
MunI	CAATTG	1 cut(s)	300
MvaI	CCWGG	1 cut(s)	61
MwoI	GCNNNNNNNGC	1 cut(s)	134
NciI	CCSGG	1 cut(s)	55
NdeI	CATATG	1 cut(s)	31
NdeII	GATC	1 cut(s)	355
NlaIV	GGNNCC	3 cut(s)	9, 96, 117
PfeI	GAWTC	1 cut(s)	227
PkrI	GCNGC	1 cut(s)	139
PmaCI	CACGTG	1 cut(s)	391
PmlI	CACGTG	1 cut(s)	391
Ppu21I	YACGTR	1 cut(s)	391
Psp6I	CCWGG	1 cut(s)	59
PspCI	CACGTG	1 cut(s)	391
PspGI	CCWGG	1 cut(s)	59
PspN4I	GGNNCC	3 cut(s)	9, 96, 117
PspPI	GGNCC	4 cut(s)	57, 63, 127, 369
PvuII	CAGCTG	1 cut(s)	46
RsaI	GTAC	1 cut(s)	259
RsaNI	GTAC	1 cut(s)	258
SaqAI	TTAA	3 cut(s)	17, 87, 168
SatI	GCNGC	1 cut(s)	138
Sau3AI	GATC	1 cut(s)	355
Sau96I	GGNCC	4 cut(s)	57, 63, 127, 369
ScaI	AGTACT	1 cut(s)	259
ScrFI	CCNGG	2 cut(s)	55, 61
SfaNI	GCATC	1 cut(s)	256
SinI	GGWCC	1 cut(s)	369
Sse9I	AATT	3 cut(s)	78, 300, 448
SsiI	CCGC	1 cut(s)	72
SspMI	CTAG	1 cut(s)	231
StyD4I	CCNGG	2 cut(s)	53, 59
TaiI	ACGT	1 cut(s)	393
TasI	AATT	3 cut(s)	78, 300, 448
TatI	WGTACW	1 cut(s)	257
TfiI	GAWTC	1 cut(s)	227
Tru1I	TTAA	3 cut(s)	17, 87, 168
Tru9I	TTAA	3 cut(s)	17, 87, 168
TscAI	CASTG	1 cut(s)	379
TseI	GCWGC	1 cut(s)	137
TspDTI	ATGAA	2 cut(s)	18, 258
TspRI	CASTG	1 cut(s)	379
VpaK11BI	GGWCC	1 cut(s)	369
XagI	CCTNNNNNAGG	1 cut(s)	428
XapI	RAATTY	1 cut(s)	448
XbaI	TCTAGA	1 cut(s)	230
XspI	CTAG	1 cut(s)	231
ZrmI	AGTACT	1 cut(s)	259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.