Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0024890

Physical Location & Seq

Genomic Coordinates Forward (+)

78021337 .. 78022066

Gene Structure 730 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021760

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGAGGTTCCTCTGTTAAGACCAAAATGTAGGAGCCCATTTTCCCAAATTAGGTGTTGTTCTTATGTGGAGCAACAGCTGAAGCCTCGGCCCAGGCCCATACCCGCCAAAATTGAGGTCGAGGAGGAACCAAAGGTCGCACCTTTGGAACCAGAAGAGGCCCAGATTGCAGTAGCCAGTTCTGGGATTTGTAGACAGATTGAGAAGTTGCTTTTGTATAAGAGGTATAGGGAAGCACTTGAAATGTTTGAGTTTTTGGAATCTAGAGGTGGGTATGAAGTGGGTAGCAGTACTTATGATGCTTTAGTGAGTGCTTGTATTAGCTTGAAATCAATTGGAGGAGTGAAGAGGGTGTTTGGTTATATGATTGGTAATGGGTTTGAGTTGGATCAGTACATGAGGAAGAGGGTTTTGCTTATGCATGTGAAATGTGGGATGATGATTGATGCACGCCACCTGTTTGAGGAAATGCCTGAGAGAAATTCGGTTTCGTGGAACACGATAATTGGGGTCTTGTGGATTGTGGAGACTTCATGGAGCCGTTCGGGTTGTTTTTGGATTTGTGGGAGGAGTTTTCTGATGGGGAGTCGAGGATATTTGCCACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

203

Amino Acids

23.17

Weight (kDa)

8.61

Isoelectric Point (pI)

63.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024890)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0168261
rosa_laevigata	RLG00000021760
rosa_multiflora	Rmu_sc0003354.1_g000002

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	193
AciI	CCGC	1 cut(s)	105
AclWI	GGATC	1 cut(s)	396
AcsI	RAATTY	1 cut(s)	481
AcuI	CTGAAG	1 cut(s)	101
AfaI	GTAC	2 cut(s)	292, 395
AfiI	CCNNNNNNNGG	3 cut(s)	51, 183, 463
AgsI	TTSAA	2 cut(s)	242, 328
AjnI	CCWGG	1 cut(s)	92
AluBI	AGCT	2 cut(s)	79, 324
AluI	AGCT	2 cut(s)	79, 324
Alw26I	GTCTC	1 cut(s)	521
AlwI	GGATC	1 cut(s)	396
AoxI	GGCC	3 cut(s)	89, 95, 159
ApoI	RAATTY	1 cut(s)	481
ArsI	GACNNNNNNTTYG	2 cut(s)	102, 134
AspS9I	GGNCC	3 cut(s)	90, 96, 160
BanII	GRGCYC	1 cut(s)	38
BccI	CCATC	1 cut(s)	574
BceAI	ACGGC	1 cut(s)	525
BciT130I	CCWGG	1 cut(s)	94
BcoDI	GTCTC	1 cut(s)	521
BfaI	CTAG	1 cut(s)	264
BmcAI	AGTACT	1 cut(s)	292
Bme1390I	CCNGG	1 cut(s)	94
BmgT120I	GGNCC	3 cut(s)	90, 96, 160
BmiI	GGNNCC	5 cut(s)	9, 35, 129, 150, 539
BmrFI	CCNGG	1 cut(s)	94
BmsI	GCATC	2 cut(s)	289, 436
BsaJI	CCNNGG	2 cut(s)	86, 92
Bsc4I	CCNNNNNNNGG	3 cut(s)	51, 183, 463
Bse1I	ACTGG	1 cut(s)	177
BseBI	CCWGG	1 cut(s)	94
BseDI	CCNNGG	2 cut(s)	86, 92
BseGI	GGATG	1 cut(s)	441
BseLI	CCNNNNNNNGG	3 cut(s)	51, 183, 463
BseMII	CTCAG	1 cut(s)	465
BseNI	ACTGG	1 cut(s)	177
BseRI	GAGGAG	3 cut(s)	137, 354, 583
BshFI	GGCC	3 cut(s)	91, 97, 161
BslI	CCNNNNNNNGG	3 cut(s)	51, 183, 463
BsmAI	GTCTC	1 cut(s)	521
BsnI	GGCC	3 cut(s)	91, 97, 161
Bsp1286I	GDGCHC	1 cut(s)	38
Bsp143I	GATC	1 cut(s)	388
BspACI	CCGC	1 cut(s)	105
BspANI	GGCC	3 cut(s)	91, 97, 161
BspCNI	CTCAG	1 cut(s)	466
BspLI	GGNNCC	5 cut(s)	9, 35, 129, 150, 539
BspPI	GGATC	1 cut(s)	396
BsrI	ACTGG	1 cut(s)	177
BssECI	CCNNGG	2 cut(s)	86, 92
BssMI	GATC	1 cut(s)	388
Bst2UI	CCWGG	1 cut(s)	94
Bst6I	CTCTTC	3 cut(s)	150, 341, 398
BstC8I	GCNNGC	1 cut(s)	451
BstDEI	CTNAG	1 cut(s)	474
BstENI	CCTNNNNNAGG	1 cut(s)	461
BstF5I	GGATG	1 cut(s)	441
BstKTI	GATC	1 cut(s)	391
BstMAI	GTCTC	1 cut(s)	521
BstMBI	GATC	1 cut(s)	388
BstMWI	GCNNNNNNNGC	1 cut(s)	167
BstNI	CCWGG	1 cut(s)	94
BstNSI	RCATGY	1 cut(s)	425
BstSCI	CCNGG	1 cut(s)	92
BsuRI	GGCC	3 cut(s)	91, 97, 161
BtsCI	GGATG	1 cut(s)	441
Cac8I	GCNNGC	1 cut(s)	451
Cfr13I	GGNCC	3 cut(s)	90, 96, 160
Csp6I	GTAC	2 cut(s)	291, 394
CviAII	CATG	3 cut(s)	397, 422, 534
CviJI	RGCY	9 cut(s)	36, 79, 85, 91, 97, 161, 176, 324, 540
CviKI_1	RGCY	9 cut(s)	36, 79, 85, 91, 97, 161, 176, 324, 540
CviQI	GTAC	2 cut(s)	291, 394
DdeI	CTNAG	1 cut(s)	474
DpnI	GATC	1 cut(s)	390
DpnII	GATC	1 cut(s)	388
Eam1104I	CTCTTC	3 cut(s)	150, 341, 398
EarI	CTCTTC	3 cut(s)	150, 341, 398
Eco24I	GRGCYC	1 cut(s)	38
Eco57I	CTGAAG	1 cut(s)	101
EcoNI	CCTNNNNNAGG	1 cut(s)	461
EcoRII	CCWGG	1 cut(s)	92
EcoT22I	ATGCAT	1 cut(s)	423
EcoT38I	GRGCYC	1 cut(s)	38
FaeI	CATG	3 cut(s)	400, 425, 537
FatI	CATG	3 cut(s)	396, 421, 533
FauI	CCCGC	1 cut(s)	112
FblI	GTMKAC	1 cut(s)	193
FokI	GGATG	1 cut(s)	448
FriOI	GRGCYC	1 cut(s)	38
FspBI	CTAG	1 cut(s)	264
HaeIII	GGCC	3 cut(s)	91, 97, 161
Hin1II	CATG	3 cut(s)	400, 425, 537
HinfI	GANTC	2 cut(s)	260, 586
Hpy166II	GTNNAC	1 cut(s)	194
Hpy188I	TCNGA	1 cut(s)	579
Hpy188III	TCNNGA	1 cut(s)	264
Hpy8I	GTNNAC	1 cut(s)	194
HpyCH4V	TGCA	3 cut(s)	170, 421, 449
HpyF10VI	GCNNNNNNNGC	1 cut(s)	167
HpyF3I	CTNAG	1 cut(s)	474
Hsp92II	CATG	3 cut(s)	400, 425, 537
Kzo9I	GATC	1 cut(s)	388
LmnI	GCTCC	3 cut(s)	33, 70, 537
LpnPI	CCDG	8 cut(s)	79, 106, 165, 168, 176, 190, 470, 486
LweI	GCATC	2 cut(s)	289, 436
MaeI	CTAG	1 cut(s)	264
MalI	GATC	1 cut(s)	390
MboI	GATC	1 cut(s)	388
MboII	GAAGA	3 cut(s)	167, 358, 415
MfeI	CAATTG	1 cut(s)	333
MhlI	GDGCHC	1 cut(s)	38
MluCI	AATT	5 cut(s)	48, 111, 333, 481, 504
MlyI	GAGTC	1 cut(s)	595
MmeI	TCCRAC	1 cut(s)	366
Mph1103I	ATGCAT	1 cut(s)	423
MseI	TTAA	1 cut(s)	17
MspA1I	CMGCKG	1 cut(s)	79
MspR9I	CCNGG	1 cut(s)	94
MunI	CAATTG	1 cut(s)	333
MvaI	CCWGG	1 cut(s)	94
MwoI	GCNNNNNNNGC	1 cut(s)	167
NdeII	GATC	1 cut(s)	388
NlaIII	CATG	3 cut(s)	400, 425, 537
NlaIV	GGNNCC	5 cut(s)	9, 35, 129, 150, 539
NmeAIII	GCCGAG	1 cut(s)	67
NsiI	ATGCAT	1 cut(s)	423
NspI	RCATGY	1 cut(s)	425
PcsI	WCGNNNNNNNCGW	1 cut(s)	497
PfeI	GAWTC	1 cut(s)	260
PleI	GAGTC	1 cut(s)	594
PpsI	GAGTC	1 cut(s)	594
Psp6I	CCWGG	1 cut(s)	92
PspGI	CCWGG	1 cut(s)	92
PspN4I	GGNNCC	5 cut(s)	9, 35, 129, 150, 539
PspPI	GGNCC	3 cut(s)	90, 96, 160
PvuII	CAGCTG	1 cut(s)	79
RsaI	GTAC	2 cut(s)	292, 395
RsaNI	GTAC	2 cut(s)	291, 394
SaqAI	TTAA	1 cut(s)	17
Sau3AI	GATC	1 cut(s)	388
Sau96I	GGNCC	3 cut(s)	90, 96, 160
ScaI	AGTACT	1 cut(s)	292
SchI	GAGTC	1 cut(s)	595
ScrFI	CCNGG	1 cut(s)	94
SduI	GDGCHC	1 cut(s)	38
SfaNI	GCATC	2 cut(s)	289, 436
Sse9I	AATT	5 cut(s)	48, 111, 333, 481, 504
SsiI	CCGC	1 cut(s)	105
SspMI	CTAG	1 cut(s)	264
StyD4I	CCNGG	1 cut(s)	92
TaqI	TCGA	2 cut(s)	120, 589
TasI	AATT	5 cut(s)	48, 111, 333, 481, 504
TatI	WGTACW	2 cut(s)	290, 393
TfiI	GAWTC	1 cut(s)	260
Tru1I	TTAA	1 cut(s)	17
Tru9I	TTAA	1 cut(s)	17
TspDTI	ATGAA	2 cut(s)	291, 522
XagI	CCTNNNNNAGG	1 cut(s)	461
XapI	RAATTY	1 cut(s)	481
XbaI	TCTAGA	1 cut(s)	263
XceI	RCATGY	1 cut(s)	425
XmiI	GTMKAC	1 cut(s)	193
XspI	CTAG	1 cut(s)	264
ZrmI	AGTACT	1 cut(s)	292
Zsp2I	ATGCAT	1 cut(s)	423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.