RchiOBHm_Chr1g0315361

Ras-related protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Forward (+)
2487253 .. 2487881
629 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 366 bp
ATGTTCATATATATATATATATATACATATATATATACACACACACACATATATATATATATATATATATATAAGAAGTTCATTCGACCATATAAAGCTACAATTGGTGCTGATTTTATTTGGGACACAGCAGGACAAGAAAGGTTTCAAAGTCTCAGGGGCAGTATTTTATGTGGAGCAAATTGTTGTGTTCTTGTTTATGATGTGAATGTTCTAAGATCATTTGAAACACTTCAGAACTGGCATGAAGAGTTTCTCATACAGGTAGGTCCAGCTGACACTGAGGCATTTCCATTTATACTACTCGGCAACAAAATTGATATAGATGGCGGAAACAACAGAGTGGTATGGACATACATAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

121

Amino Acids

14.29

Weight (kDa)

6.25

Isoelectric Point (pI)

32.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ras PF00071 40 - 110 5.1e-19 Ras family
Roc PF08477 40 - 107 1.6e-11 Ras of Complex, Roc, domain of DAPkinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020840)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52280 AT3G16100
rosa_chinensis RchiOBHm_Chr1g0315361
rosa_wichuraiana Rw1G014070 Rw1G023270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 330
AcuI CTGAAG 1 cut(s) 218
AgsI TTSAA 2 cut(s) 149, 227
AluBI AGCT 2 cut(s) 98, 275
AluI AGCT 2 cut(s) 98, 275
Alw26I GTCTC 1 cut(s) 158
Asp700I GAANNNNTTC 3 cut(s) 144, 231, 252
AspS9I GGNCC 1 cut(s) 269
AvaII GGWCC 1 cut(s) 269
BccI CCATC 1 cut(s) 320
BcoDI GTCTC 1 cut(s) 158
Bme18I GGWCC 1 cut(s) 269
BmgT120I GGNCC 1 cut(s) 269
Bse1I ACTGG 1 cut(s) 245
BseMII CTCAG 2 cut(s) 169, 273
BseNI ACTGG 1 cut(s) 245
BslFI GGGAC 1 cut(s) 137
BsmAI GTCTC 1 cut(s) 158
BsmFI GGGAC 1 cut(s) 137
Bsp143I GATC 1 cut(s) 218
BspACI CCGC 1 cut(s) 330
BspCNI CTCAG 2 cut(s) 168, 274
BsrI ACTGG 1 cut(s) 245
BssMI GATC 1 cut(s) 218
Bst6I CTCTTC 1 cut(s) 243
BstDEI CTNAG 3 cut(s) 155, 215, 282
BstKTI GATC 1 cut(s) 221
BstMAI GTCTC 1 cut(s) 158
BstMBI GATC 1 cut(s) 218
BtsIMutI CAGTG 1 cut(s) 279
Cfr13I GGNCC 1 cut(s) 269
CviAII CATG 1 cut(s) 245
CviJI RGCY 2 cut(s) 98, 275
CviKI_1 RGCY 2 cut(s) 98, 275
DdeI CTNAG 3 cut(s) 155, 215, 282
DpnI GATC 1 cut(s) 220
DpnII GATC 1 cut(s) 218
Eam1104I CTCTTC 1 cut(s) 243
EarI CTCTTC 1 cut(s) 243
EciI GGCGGA 1 cut(s) 345
Eco47I GGWCC 1 cut(s) 269
Eco57I CTGAAG 1 cut(s) 218
FaeI CATG 1 cut(s) 248
FaqI GGGAC 1 cut(s) 137
FatI CATG 1 cut(s) 244
Hin1II CATG 1 cut(s) 248
Hpy188I TCNGA 1 cut(s) 237
HpyF3I CTNAG 3 cut(s) 155, 215, 282
Hsp92II CATG 1 cut(s) 248
Kzo9I GATC 1 cut(s) 218
LmnI GCTCC 1 cut(s) 176
LpnPI CCDG 5 cut(s) 117, 142, 226, 248, 285
MalI GATC 1 cut(s) 220
MboI GATC 1 cut(s) 218
MboII GAAGA 1 cut(s) 260
MfeI CAATTG 1 cut(s) 102
MluCI AATT 3 cut(s) 102, 181, 315
MnlI CCTC 1 cut(s) 277
MroXI GAANNNNTTC 3 cut(s) 144, 231, 252
MspA1I CMGCKG 1 cut(s) 275
MunI CAATTG 1 cut(s) 102
NdeII GATC 1 cut(s) 218
NlaIII CATG 1 cut(s) 248
NmeAIII GCCGAG 1 cut(s) 285
PdmI GAANNNNTTC 3 cut(s) 144, 231, 252
PspPI GGNCC 1 cut(s) 269
PvuII CAGCTG 1 cut(s) 275
Sau3AI GATC 1 cut(s) 218
Sau96I GGNCC 1 cut(s) 269
SetI ASST 5 cut(s) 100, 146, 267, 271, 277
SgeI CNNG 9 cut(s) 144, 149, 169, 206, 253, 257, 275, 284, 317
SinI GGWCC 1 cut(s) 269
Sse9I AATT 3 cut(s) 102, 181, 315
SsiI CCGC 1 cut(s) 330
TaqI TCGA 1 cut(s) 85
TasI AATT 3 cut(s) 102, 181, 315
TscAI CASTG 1 cut(s) 286
TspDTI ATGAA 2 cut(s) 70, 261
TspRI CASTG 1 cut(s) 286
VpaK11BI GGWCC 1 cut(s) 269
XmnI GAANNNNTTC 3 cut(s) 144, 231, 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.