Rw1G023270

Ras-related protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Forward (+)
49009061 .. 49014601
5541 bp
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UTR
Exon/CDS
Intron
Rw1G023270.1

Sequence Viewer

Length: 645 bp
ATGTGGCAACAATTATTTTCTTTCGGATTGAGGCAAAAAAATTTAGAAGTAGGTTCAGCAAAATTGAAGTTCATTCAACAATATAAAGCTACAATTGGTGCTGATTTTGTCACAAAGGAACCTCATGTTGATGACAAATTGGTGACTTTGCAAATTTGGGACACAGCAGGACAAGAAAGGTTTCAAAGTCTCAGGGGCAGCATTTTATGTGGAGCAGATTGTTGTGTTCTTGTTTATGATGTGAATGTTCTAAGATCATTTGAAACACTTCAGAACTGGCATGAAGAGTTTCTCATACAGGTAGGTCCAGCTAACACTGAGGCATTTCCATTTATACTACTCAGCAACAAAATTGATATAGATGGCGGAAACAGCAGAGCGATTGAAAAAAAACTTCGGTTTTGGTGTCAATACTGGATTATTGTGGCAATGCTTACAGTTCTTGAAAGAATCGGAGATGTATTCGTTGCATGGTTGCCCATGTATGGCGAGGCAAAGGTTGCCATTTTCATCTATCTTTGGTATCCAAAAACCAGGGGAGCTGGAACTTCGCCCGTTATGGGCGGACAGCTATCTTCCAATTTCTTAACTACGTCAACAGGATGCTCAATTATCGAAAATGAACAAAACCACAACCACAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

214

Amino Acids

24.32

Weight (kDa)

6.08

Isoelectric Point (pI)

37.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ras PF00071 22 - 129 7.4e-28 Ras family
Roc PF08477 23 - 119 4.5e-17 Ras of Complex, Roc, domain of DAPkinase
TB2_DP1_HVA22 PF03134 131 - 182 9.7e-17 TB2/DP1, HVA22 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020840)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52280 AT3G16100
rosa_chinensis RchiOBHm_Chr1g0315361
rosa_wichuraiana Rw1G014070 Rw1G023270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 366, 564
AcsI RAATTY 2 cut(s) 40, 153
AcuI CTGAAG 1 cut(s) 254
AfiI CCNNNNNNNGG 2 cut(s) 485, 560
AgsI TTSAA 6 cut(s) 67, 77, 185, 263, 386, 446
AjnI CCWGG 1 cut(s) 533
AluBI AGCT 4 cut(s) 89, 311, 542, 571
AluI AGCT 4 cut(s) 89, 311, 542, 571
Alw26I GTCTC 1 cut(s) 194
ApeKI GCWGC 1 cut(s) 198
ApoI RAATTY 2 cut(s) 40, 153
Asp700I GAANNNNTTC 3 cut(s) 180, 267, 288
AspS9I GGNCC 1 cut(s) 305
AsuHPI GGTGA 1 cut(s) 154
AvaII GGWCC 1 cut(s) 305
BbvI GCAGC 1 cut(s) 210
BccI CCATC 1 cut(s) 356
BciT130I CCWGG 1 cut(s) 535
BciVI GTATCC 1 cut(s) 534
BcoDI GTCTC 1 cut(s) 194
BfuI GTATCC 1 cut(s) 534
BisI GCNGC 1 cut(s) 199
BlsI GCNGC 1 cut(s) 200
Bme1390I CCNGG 1 cut(s) 535
Bme18I GGWCC 1 cut(s) 305
BmgT120I GGNCC 1 cut(s) 305
BmiI GGNNCC 1 cut(s) 120
BmrFI CCNGG 1 cut(s) 535
BmsI GCATC 1 cut(s) 593
BsaJI CCNNGG 1 cut(s) 534
Bsc4I CCNNNNNNNGG 2 cut(s) 485, 560
Bse1I ACTGG 2 cut(s) 281, 419
Bse3DI GCAATG 1 cut(s) 435
BseBI CCWGG 1 cut(s) 535
BseDI CCNNGG 1 cut(s) 534
BseGI GGATG 1 cut(s) 608
BseLI CCNNNNNNNGG 2 cut(s) 485, 560
BseMI GCAATG 1 cut(s) 435
BseMII CTCAG 3 cut(s) 205, 309, 355
BseNI ACTGG 2 cut(s) 281, 419
BseXI GCAGC 1 cut(s) 210
BslFI GGGAC 1 cut(s) 173
BslI CCNNNNNNNGG 2 cut(s) 485, 560
BsmAI GTCTC 1 cut(s) 194
BsmFI GGGAC 1 cut(s) 173
Bsp143I GATC 1 cut(s) 254
BspACI CCGC 2 cut(s) 366, 564
BspCNI CTCAG 3 cut(s) 204, 310, 354
BspLI GGNNCC 1 cut(s) 120
BsrDI GCAATG 1 cut(s) 435
BsrI ACTGG 2 cut(s) 281, 419
BssECI CCNNGG 1 cut(s) 534
BssMI GATC 1 cut(s) 254
Bst2UI CCWGG 1 cut(s) 535
Bst4CI ACNGT 1 cut(s) 439
Bst6I CTCTTC 1 cut(s) 279
BstAPI GCANNNNNTGC 1 cut(s) 500
BstDEI CTNAG 4 cut(s) 191, 251, 318, 341
BstF5I GGATG 1 cut(s) 608
BstKTI GATC 1 cut(s) 257
BstMAI GTCTC 1 cut(s) 194
BstMBI GATC 1 cut(s) 254
BstMWI GCNNNNNNNGC 2 cut(s) 372, 500
BstNI CCWGG 1 cut(s) 535
BstSCI CCNGG 1 cut(s) 533
BstV1I GCAGC 1 cut(s) 210
BsuI GTATCC 1 cut(s) 534
BtsCI GGATG 1 cut(s) 608
BtsIMutI CAGTG 1 cut(s) 315
Cfr13I GGNCC 1 cut(s) 305
CviAII CATG 4 cut(s) 125, 281, 471, 481
CviJI RGCY 4 cut(s) 89, 311, 542, 571
CviKI_1 RGCY 4 cut(s) 89, 311, 542, 571
DdeI CTNAG 4 cut(s) 191, 251, 318, 341
DpnI GATC 1 cut(s) 256
DpnII GATC 1 cut(s) 254
Eam1104I CTCTTC 1 cut(s) 279
EarI CTCTTC 1 cut(s) 279
EciI GGCGGA 2 cut(s) 381, 579
Eco47I GGWCC 1 cut(s) 305
Eco57I CTGAAG 1 cut(s) 254
EcoRII CCWGG 1 cut(s) 533
FaeI CATG 4 cut(s) 128, 284, 474, 484
FaqI GGGAC 1 cut(s) 173
FatI CATG 4 cut(s) 124, 280, 470, 480
Fnu4HI GCNGC 1 cut(s) 199
FokI GGATG 1 cut(s) 615
Fsp4HI GCNGC 1 cut(s) 199
GluI GCNGC 1 cut(s) 199
Hin1II CATG 4 cut(s) 128, 284, 474, 484
HincII GTYRAC 1 cut(s) 597
HindII GTYRAC 1 cut(s) 597
HinfI GANTC 1 cut(s) 450
HphI GGTGA 1 cut(s) 154
Hpy166II GTNNAC 1 cut(s) 597
Hpy188I TCNGA 3 cut(s) 26, 273, 455
Hpy188III TCNNGA 1 cut(s) 443
Hpy8I GTNNAC 1 cut(s) 597
HpyCH4III ACNGT 1 cut(s) 439
HpyCH4IV ACGT 1 cut(s) 593
HpyCH4V TGCA 2 cut(s) 151, 470
HpyF10VI GCNNNNNNNGC 2 cut(s) 372, 500
HpyF3I CTNAG 4 cut(s) 191, 251, 318, 341
HpySE526I ACGT 1 cut(s) 593
Hsp92II CATG 4 cut(s) 128, 284, 474, 484
Kzo9I GATC 1 cut(s) 254
LmnI GCTCC 2 cut(s) 212, 539
Lsp1109I GCAGC 1 cut(s) 210
LweI GCATC 1 cut(s) 593
MaeII ACGT 1 cut(s) 593
MaeIII GTNAC 2 cut(s) 109, 142
MalI GATC 1 cut(s) 256
MboI GATC 1 cut(s) 254
MboII GAAGA 2 cut(s) 296, 567
MfeI CAATTG 1 cut(s) 93
MluCI AATT 9 cut(s) 11, 40, 62, 93, 137, 153, 351, 580, 609
MnlI CCTC 4 cut(s) 24, 132, 313, 484
MroXI GAANNNNTTC 3 cut(s) 180, 267, 288
MseI TTAA 1 cut(s) 587
MslI CAYNNNNRTG 1 cut(s) 129
MspR9I CCNGG 1 cut(s) 535
MunI CAATTG 1 cut(s) 93
MvaI CCWGG 1 cut(s) 535
MwoI GCNNNNNNNGC 2 cut(s) 372, 500
NdeII GATC 1 cut(s) 254
NlaIII CATG 4 cut(s) 128, 284, 474, 484
NlaIV GGNNCC 1 cut(s) 120
NmuCI GTSAC 2 cut(s) 109, 142
PdmI GAANNNNTTC 3 cut(s) 180, 267, 288
PfeI GAWTC 1 cut(s) 450
PkrI GCNGC 1 cut(s) 200
Psp6I CCWGG 1 cut(s) 533
PspGI CCWGG 1 cut(s) 533
PspN4I GGNNCC 1 cut(s) 120
PspPI GGNCC 1 cut(s) 305
RseI CAYNNNNRTG 1 cut(s) 129
SaqAI TTAA 1 cut(s) 587
SatI GCNGC 1 cut(s) 199
Sau3AI GATC 1 cut(s) 254
Sau96I GGNCC 1 cut(s) 305
ScrFI CCNGG 1 cut(s) 535
SfaNI GCATC 1 cut(s) 593
SinI GGWCC 1 cut(s) 305
SmiMI CAYNNNNRTG 1 cut(s) 129
Sse9I AATT 9 cut(s) 11, 40, 62, 93, 137, 153, 351, 580, 609
SsiI CCGC 2 cut(s) 366, 564
StyD4I CCNGG 1 cut(s) 533
TaaI ACNGT 1 cut(s) 439
TaiI ACGT 1 cut(s) 596
TaqI TCGA 1 cut(s) 615
TasI AATT 9 cut(s) 11, 40, 62, 93, 137, 153, 351, 580, 609
TfiI GAWTC 1 cut(s) 450
Tru1I TTAA 1 cut(s) 587
Tru9I TTAA 1 cut(s) 587
TscAI CASTG 1 cut(s) 322
TseFI GTSAC 2 cut(s) 109, 142
TseI GCWGC 1 cut(s) 198
Tsp45I GTSAC 2 cut(s) 109, 142
TspDTI ATGAA 4 cut(s) 61, 297, 499, 636
TspRI CASTG 1 cut(s) 322
VpaK11BI GGWCC 1 cut(s) 305
XapI RAATTY 2 cut(s) 40, 153
XmnI GAANNNNTTC 3 cut(s) 180, 267, 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.