Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0024750

Physical Location & Seq

Genomic Coordinates Reverse (-)

5387493 .. 5392833

Gene Structure 5341 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGATTAAGACCTTATCTGTGGGCAATGACTTCATTGGGGATGTTCCTTTAACGAAGAAAATTCTTGCTGCATTAACTAAAGGTGCTCTAGCAATCACAGTGGCAAATCCAACTGATCTTGTAAAAGTTAGACTTCAAGCTGAGGGAAAACTACCACCAGGTGCACCAAGGCGCACTAAATGCGTATTCCACCATTTTGAGACAGTTGGGGATCTCTGGACTGGAATTGCACCTAACATTGCACGTAATGCTATCATTAATGCTGCTGAACTAGCCAGTTATGATCAAGTGAAGCAGACACTTTTGGAAATTCCTGGCTTTAAGGACAATATTGTCGCTCATCTTTTTGCTGGCCTGGGGGTTAAGTCAAGAATGATGGGAGATTCTTCTGCTTACAAAAAAACGATCGATTGCTTCGTTAAAACTTTGAAGAATGATTACATAACAAAGGACCTTTGCTACTGTATCATCTACCAAAGACGTCCTCTACTTAGTAACTCAGTTACGTGGCCTAGTCCCACCTTTTCCAAACAAAGACTTCCAAGTTCTTCCAAGTGCCAAGCAAAACTCAACCTATGTGTACAAGCCCTTGGCAACTGGAGCATATATTGGCCAAAAGACAGCTATAGATGTCCACAGCCACTGTCAGATATATATCAAGGTTGCATCTCTTATCCGAAAGCAGCTAGAGAATCTGGCAGAACTTCAGAGAGGAATAAAGGGAAAGAAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005773 GO:0005774 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006839 GO:0006865 GO:0008150 GO:0008152 GO:0008509 GO:0008514 GO:0009506 GO:0009507 GO:0009536 GO:0009853 GO:0009987 GO:0015075 GO:0015171 GO:0015318 GO:0015672 GO:0015711 GO:0015849 GO:0016020 GO:0016021 GO:0017077 GO:0019866 GO:0022857 GO:0030054 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071702 GO:0071705 GO:0098588 GO:0098655 GO:0098656 GO:0098660 GO:0098662 GO:0098805 GO:1902600 GO:1903825 GO:1905039 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

244

Amino Acids

27.04

Weight (kDa)

9.57

Isoelectric Point (pI)

31.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	15 - 102	2.6e-14	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0024750)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0317861
rosa_samantha	Rh1CG028000
rosa_wichuraiana	Rw1G002130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	332
AatII	GACGTC	1 cut(s)	484
AclWI	GGATC	1 cut(s)	219
AcoI	YGGCCR	1 cut(s)	611
AcsI	RAATTY	2 cut(s)	60, 309
AcuI	CTGAAG	1 cut(s)	690
AcyI	GRCGYC	1 cut(s)	481
AdeI	CACNNNGTG	1 cut(s)	161
AfaI	GTAC	1 cut(s)	582
AgsI	TTSAA	2 cut(s)	137, 430
AjnI	CCWGG	3 cut(s)	157, 313, 354
AluBI	AGCT	3 cut(s)	140, 624, 686
AluI	AGCT	3 cut(s)	140, 624, 686
Alw21I	GWGCWC	2 cut(s)	88, 166
Alw26I	GTCTC	1 cut(s)	194
Alw44I	GTGCAC	1 cut(s)	162
AlwI	GGATC	1 cut(s)	219
AlwNI	CAGNNNCTG	1 cut(s)	643
AoxI	GGCC	3 cut(s)	352, 509, 611
ApaLI	GTGCAC	1 cut(s)	162
ApeKI	GCWGC	3 cut(s)	68, 263, 683
ApoI	RAATTY	2 cut(s)	60, 309
AseI	ATTAAT	1 cut(s)	258
AspLEI	GCGC	1 cut(s)	174
AspS9I	GGNCC	1 cut(s)	451
AvaII	GGWCC	1 cut(s)	451
BaeGI	GKGCMC	1 cut(s)	166
BalI	TGGCCA	1 cut(s)	613
BarI	GAAGNNNNNNTAC	2 cut(s)	422, 454
Bbv12I	GWGCWC	2 cut(s)	88, 166
BbvCI	CCTCAGC	1 cut(s)	141
BbvI	GCAGC	3 cut(s)	55, 250, 695
BccI	CCATC	1 cut(s)	370
BciT130I	CCWGG	3 cut(s)	159, 315, 356
BclI	TGATCA	1 cut(s)	283
BcoDI	GTCTC	1 cut(s)	194
BfaI	CTAG	4 cut(s)	89, 272, 513, 687
BfmI	CTRYAG	1 cut(s)	625
BisI	GCNGC	3 cut(s)	69, 264, 684
BlsI	GCNGC	3 cut(s)	70, 265, 685
Bme1390I	CCNGG	3 cut(s)	159, 315, 356
Bme18I	GGWCC	1 cut(s)	451
BmgT120I	GGNCC	1 cut(s)	451
BmrFI	CCNGG	3 cut(s)	159, 315, 356
BmsI	GCATC	1 cut(s)	675
BpmI	CTGGAG	1 cut(s)	619
Bpu10I	CCTNAGC	1 cut(s)	141
Bsa29I	ATCGAT	1 cut(s)	408
BsaAI	YACGTR	2 cut(s)	245, 507
BsaBI	GATNNNNATC	1 cut(s)	654
BsaHI	GRCGYC	1 cut(s)	481
BsaJI	CCNNGG	3 cut(s)	167, 355, 589
Bse1I	ACTGG	3 cut(s)	226, 276, 602
Bse3DI	GCAATG	2 cut(s)	31, 237
Bse8I	GATNNNNATC	1 cut(s)	654
BseBI	CCWGG	3 cut(s)	159, 315, 356
BseCI	ATCGAT	1 cut(s)	408
BseDI	CCNNGG	3 cut(s)	167, 355, 589
BseGI	GGATG	1 cut(s)	46
BseJI	GATNNNNATC	1 cut(s)	654
BseMI	GCAATG	2 cut(s)	31, 237
BseMII	CTCAG	2 cut(s)	132, 513
BseNI	ACTGG	3 cut(s)	226, 276, 602
BseSI	GKGCMC	1 cut(s)	166
BseXI	GCAGC	3 cut(s)	55, 250, 695
Bsh1285I	CGRYCG	1 cut(s)	408
BshFI	GGCC	3 cut(s)	354, 511, 613
BshVI	ATCGAT	1 cut(s)	408
BsiEI	CGRYCG	1 cut(s)	408
BsiHKAI	GWGCWC	2 cut(s)	88, 166
BslFI	GGGAC	1 cut(s)	501
BsmAI	GTCTC	1 cut(s)	194
BsmFI	GGGAC	1 cut(s)	501
BsnI	GGCC	3 cut(s)	354, 511, 613
Bsp1286I	GDGCHC	2 cut(s)	88, 166
Bsp1407I	TGTACA	1 cut(s)	580
Bsp143I	GATC	4 cut(s)	115, 211, 283, 405
BspANI	GGCC	3 cut(s)	354, 511, 613
BspCNI	CTCAG	2 cut(s)	133, 512
BspDI	ATCGAT	1 cut(s)	408
BspPI	GGATC	1 cut(s)	219
BsrDI	GCAATG	2 cut(s)	31, 237
BsrGI	TGTACA	1 cut(s)	580
BsrI	ACTGG	3 cut(s)	226, 276, 602
BssECI	CCNNGG	3 cut(s)	167, 355, 589
BssMI	GATC	4 cut(s)	115, 211, 283, 405
BssNI	GRCGYC	1 cut(s)	481
BssT1I	CCWWGG	2 cut(s)	167, 589
Bst2UI	CCWGG	3 cut(s)	159, 315, 356
Bst4CI	ACNGT	4 cut(s)	100, 205, 464, 645
BstACI	GRCGYC	1 cut(s)	481
BstAPI	GCANNNNNTGC	2 cut(s)	180, 248
BstAUI	TGTACA	1 cut(s)	580
BstBAI	YACGTR	2 cut(s)	245, 507
BstC8I	GCNNGC	1 cut(s)	352
BstDEI	CTNAG	3 cut(s)	141, 491, 499
BstF5I	GGATG	1 cut(s)	46
BstHHI	GCGC	1 cut(s)	174
BstKTI	GATC	4 cut(s)	118, 214, 286, 408
BstMAI	GTCTC	1 cut(s)	194
BstMBI	GATC	4 cut(s)	115, 211, 283, 405
BstMCI	CGRYCG	1 cut(s)	408
BstMWI	GCNNNNNNNGC	4 cut(s)	180, 248, 272, 600
BstNI	CCWGG	3 cut(s)	159, 315, 356
BstSCI	CCNGG	3 cut(s)	157, 313, 354
BstSFI	CTRYAG	1 cut(s)	625
BstSLI	GKGCMC	1 cut(s)	166
BstV1I	GCAGC	3 cut(s)	55, 250, 695
BstX2I	RGATCY	1 cut(s)	211
BstYI	RGATCY	1 cut(s)	211
Bsu15I	ATCGAT	1 cut(s)	408
BsuRI	GGCC	3 cut(s)	354, 511, 613
BsuTUI	ATCGAT	1 cut(s)	408
BtsCI	GGATG	1 cut(s)	46
BtsIMutI	CAGTG	2 cut(s)	105, 641
Cac8I	GCNNGC	1 cut(s)	352
CaiI	CAGNNNCTG	1 cut(s)	643
CfoI	GCGC	1 cut(s)	174
Cfr13I	GGNCC	1 cut(s)	451
ClaI	ATCGAT	1 cut(s)	408
CsiI	ACCWGGT	1 cut(s)	157
Csp6I	GTAC	1 cut(s)	581
CspCI	CAANNNNNGTGG	2 cut(s)	81, 116
CviQI	GTAC	1 cut(s)	581
DdeI	CTNAG	3 cut(s)	141, 491, 499
DpnI	GATC	4 cut(s)	117, 213, 285, 407
DpnII	GATC	4 cut(s)	115, 211, 283, 405
DraIII	CACNNNGTG	1 cut(s)	161
DrdI	GACNNNNNNGTC	1 cut(s)	332
DseDI	GACNNNNNNGTC	1 cut(s)	332
EaeI	YGGCCR	1 cut(s)	611
Eco130I	CCWWGG	2 cut(s)	167, 589
Eco47I	GGWCC	1 cut(s)	451
Eco57I	CTGAAG	1 cut(s)	690
EcoO109I	RGGNCCY	1 cut(s)	451
EcoRII	CCWGG	3 cut(s)	157, 313, 354
EcoT14I	CCWWGG	2 cut(s)	167, 589
ErhI	CCWWGG	2 cut(s)	167, 589
FaiI	YATR	8 cut(s)	282, 443, 577, 605, 607, 627, 653, 655
FalI	AAGNNNNNCTT	2 cut(s)	117, 149
FaqI	GGGAC	1 cut(s)	501
FbaI	TGATCA	1 cut(s)	283
Fnu4HI	GCNGC	3 cut(s)	69, 264, 684
FokI	GGATG	1 cut(s)	53
Fsp4HI	GCNGC	3 cut(s)	69, 264, 684
FspBI	CTAG	4 cut(s)	89, 272, 513, 687
GlaI	GCGC	1 cut(s)	173
GluI	GCNGC	3 cut(s)	69, 264, 684
GsuI	CTGGAG	1 cut(s)	619
HaeIII	GGCC	3 cut(s)	354, 511, 613
HhaI	GCGC	1 cut(s)	174
Hin1I	GRCGYC	1 cut(s)	481
Hin6I	GCGC	1 cut(s)	172
HinP1I	GCGC	1 cut(s)	172
HinfI	GANTC	2 cut(s)	383, 692
Hpy166II	GTNNAC	3 cut(s)	164, 581, 635
Hpy188I	TCNGA	3 cut(s)	649, 678, 709
Hpy188III	TCNNGA	2 cut(s)	217, 369
Hpy8I	GTNNAC	3 cut(s)	164, 581, 635
HpyCH4III	ACNGT	4 cut(s)	100, 205, 464, 645
HpyCH4IV	ACGT	3 cut(s)	244, 481, 506
HpyCH4V	TGCA	5 cut(s)	71, 164, 230, 242, 666
HpyF10VI	GCNNNNNNNGC	4 cut(s)	180, 248, 272, 600
HpyF3I	CTNAG	3 cut(s)	141, 491, 499
HpySE526I	ACGT	3 cut(s)	244, 481, 506
Hsp92I	GRCGYC	1 cut(s)	481
HspAI	GCGC	1 cut(s)	172
Ksp22I	TGATCA	1 cut(s)	283
Kzo9I	GATC	4 cut(s)	115, 211, 283, 405
LmnI	GCTCC	1 cut(s)	600
Lsp1109I	GCAGC	3 cut(s)	55, 250, 695
LweI	GCATC	1 cut(s)	675
MabI	ACCWGGT	1 cut(s)	157
MaeI	CTAG	4 cut(s)	89, 272, 513, 687
MaeII	ACGT	3 cut(s)	244, 481, 506
MaeIII	GTNAC	2 cut(s)	494, 502
MalI	GATC	4 cut(s)	117, 213, 285, 407
MboI	GATC	4 cut(s)	115, 211, 283, 405
MboII	GAAGA	4 cut(s)	67, 378, 442, 540
MflI	RGATCY	1 cut(s)	211
MhlI	GDGCHC	2 cut(s)	88, 166
MlsI	TGGCCA	1 cut(s)	613
MluCI	AATT	3 cut(s)	60, 225, 309
MluNI	TGGCCA	1 cut(s)	613
MmeI	TCCRAC	1 cut(s)	134
MnlI	CCTC	3 cut(s)	136, 495, 705
Mox20I	TGGCCA	1 cut(s)	613
MscI	TGGCCA	1 cut(s)	613
MseI	TTAA	7 cut(s)	6, 50, 74, 258, 321, 363, 420
Msp20I	TGGCCA	1 cut(s)	613
MspR9I	CCNGG	3 cut(s)	159, 315, 356
MvaI	CCWGG	3 cut(s)	159, 315, 356
MwoI	GCNNNNNNNGC	4 cut(s)	180, 248, 272, 600
NdeII	GATC	4 cut(s)	115, 211, 283, 405
PcsI	WCGNNNNNNNCGW	1 cut(s)	414
PfeI	GAWTC	2 cut(s)	383, 692
PkrI	GCNGC	3 cut(s)	70, 265, 685
Ple19I	CGATCG	1 cut(s)	408
Ppu21I	YACGTR	2 cut(s)	245, 507
PpuMI	RGGWCCY	1 cut(s)	451
PshBI	ATTAAT	1 cut(s)	258
Psp5II	RGGWCCY	1 cut(s)	451
Psp6I	CCWGG	3 cut(s)	157, 313, 354
PspGI	CCWGG	3 cut(s)	157, 313, 354
PspPI	GGNCC	1 cut(s)	451
PspPPI	RGGWCCY	1 cut(s)	451
PstNI	CAGNNNCTG	1 cut(s)	643
PsuI	RGATCY	1 cut(s)	211
PvuI	CGATCG	1 cut(s)	408
RsaI	GTAC	1 cut(s)	582
RsaNI	GTAC	1 cut(s)	581
SaqAI	TTAA	7 cut(s)	6, 50, 74, 258, 321, 363, 420
SatI	GCNGC	3 cut(s)	69, 264, 684
Sau3AI	GATC	4 cut(s)	115, 211, 283, 405
Sau96I	GGNCC	1 cut(s)	451
ScrFI	CCNGG	3 cut(s)	159, 315, 356
SduI	GDGCHC	2 cut(s)	88, 166
SexAI	ACCWGGT	1 cut(s)	157
SfaNI	GCATC	1 cut(s)	675
SfcI	CTRYAG	1 cut(s)	625
SinI	GGWCC	1 cut(s)	451
Sse9I	AATT	3 cut(s)	60, 225, 309
SspI	AATATT	1 cut(s)	331
SspMI	CTAG	4 cut(s)	89, 272, 513, 687
StyD4I	CCNGG	3 cut(s)	157, 313, 354
StyI	CCWWGG	2 cut(s)	167, 589
TaaI	ACNGT	4 cut(s)	100, 205, 464, 645
TaiI	ACGT	3 cut(s)	247, 484, 509
TaqI	TCGA	1 cut(s)	408
TasI	AATT	3 cut(s)	60, 225, 309
TatI	WGTACW	1 cut(s)	580
TfiI	GAWTC	2 cut(s)	383, 692
Tru1I	TTAA	7 cut(s)	6, 50, 74, 258, 321, 363, 420
Tru9I	TTAA	7 cut(s)	6, 50, 74, 258, 321, 363, 420
TscAI	CASTG	2 cut(s)	105, 648
TseI	GCWGC	3 cut(s)	68, 263, 683
TspDTI	ATGAA	1 cut(s)	22
TspRI	CASTG	2 cut(s)	105, 648
VneI	GTGCAC	1 cut(s)	162
VpaK11BI	GGWCC	1 cut(s)	451
VspI	ATTAAT	1 cut(s)	258
XapI	RAATTY	2 cut(s)	60, 309
XspI	CTAG	4 cut(s)	89, 272, 513, 687
ZraI	GACGTC	1 cut(s)	482

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.