Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0024750

Physical Location & Seq

Genomic Coordinates Reverse (-)

3880499 .. 3884829

Gene Structure 4331 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G002130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGATTCAATTTCTCATAGTTTCAATGTGGTTGCAGGAATCACTACAAGGAGTGAATGTTTAAAGATAATAGTAACAATGCGCACAGCAAGAATTCAAGATATCCAACCCTTAGAAAATGACCTCCATATCAAAGTGCAGATTAAGACCTTATCTGTGGGCAATGACTTCATTGGGGATGTTCCTTTAACGAAGAAAATTCTTGCTGCATTAACTAAAGGTGCTCTAGCAATCACAGTGGCAAATCCAACTGATCTTGTAAAAGTTAGACTTCAAGCTGAGGGAAAACTACCACCAGGTGCACCAAGGCGCACTAAATGCGAGGGAGTTGGGGATCTCTGGACTGGAATTGGACCTAACATTGCACGTAATGCTATCATTAATGCTGCTGAACTAGCCAGTTATGATCAAGTGAAGCAGACACTTTTGGAAATTCCTGGCTTTAAGGACAATATTGTCGCTCATCTTTTTGCTGGCCTGGGGGTAGGTTTCTTTGCCGTTTGCATTGGCCCGCCAGTTGATGTGGTTAAGTCAAGAATGATGGGAGATTCTTCTGCTTACAAAAATACGATCGATTGCTTCGTTAAAACTTTGAAGAATGATATCAAAAGGTTTAAAATCTCTGGCTCTATTCTGCAGTACATAACAAAGGACCTTTGCTACTGTATCATCTACCAAAGACGTCCTCTACTTAGTAACTCAGTTACGTGGCCTAGTCCCACCTTTTCCAAACAAAGACTTCCAAGTTCTTCCAAGTGCCAAGCAAACTCAACCTATGTGTACAAGCCCTTGGCAACTGGAGCATATATTGGCCAAAAGACAGCTATAGATGTCCACAGCCACTGTCAGATATATATCAAGGTTGCATCTCTTATCCGAAAGCAGCTAGAGAATCTGGCAGAACTTCAGAGAGGAATAAAGGGAAAGAAAAATGATATCCACTTTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005773 GO:0005774 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006839 GO:0006865 GO:0008150 GO:0008152 GO:0008509 GO:0008514 GO:0009506 GO:0009507 GO:0009536 GO:0009853 GO:0009987 GO:0015075 GO:0015171 GO:0015318 GO:0015672 GO:0015711 GO:0015849 GO:0016020 GO:0016021 GO:0017077 GO:0019866 GO:0022857 GO:0030054 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071702 GO:0071705 GO:0098588 GO:0098655 GO:0098656 GO:0098660 GO:0098662 GO:0098805 GO:1902600 GO:1903825 GO:1905039 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

316

Amino Acids

34.73

Weight (kDa)

9.6

Isoelectric Point (pI)

29.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	61 - 143	1.4e-14	Mitochondrial carrier protein
Mito_carr	PF00153	150 - 200	2.6e-08	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024750)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0317861
rosa_samantha	Rh1CG028000
rosa_wichuraiana	Rw1G002130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	455
AatII	GACGTC	1 cut(s)	685
Acc16I	TGCGCA	1 cut(s)	83
AciI	CCGC	1 cut(s)	512
AclWI	GGATC	1 cut(s)	342
AcoI	YGGCCR	1 cut(s)	811
AcsI	RAATTY	3 cut(s)	93, 198, 432
AcuI	CTGAAG	1 cut(s)	890
AcyI	GRCGYC	1 cut(s)	682
AdeI	CACNNNGTG	1 cut(s)	299
AfaI	GTAC	2 cut(s)	641, 782
AgsI	TTSAA	5 cut(s)	9, 25, 98, 275, 595
AjnI	CCWGG	3 cut(s)	295, 436, 477
AluBI	AGCT	3 cut(s)	278, 824, 886
AluI	AGCT	3 cut(s)	278, 824, 886
Alw21I	GWGCWC	2 cut(s)	226, 304
Alw44I	GTGCAC	1 cut(s)	300
AlwI	GGATC	1 cut(s)	342
AlwNI	CAGNNNCTG	1 cut(s)	843
AoxI	GGCC	4 cut(s)	475, 508, 710, 811
ApaLI	GTGCAC	1 cut(s)	300
ApeKI	GCWGC	3 cut(s)	206, 386, 883
ApoI	RAATTY	3 cut(s)	93, 198, 432
AseI	ATTAAT	1 cut(s)	381
AspLEI	GCGC	2 cut(s)	84, 312
AspS9I	GGNCC	3 cut(s)	353, 509, 652
AvaII	GGWCC	2 cut(s)	353, 652
BaeGI	GKGCMC	1 cut(s)	304
BalI	TGGCCA	1 cut(s)	813
Bbv12I	GWGCWC	2 cut(s)	226, 304
BbvCI	CCTCAGC	1 cut(s)	279
BbvI	GCAGC	3 cut(s)	193, 373, 895
BccI	CCATC	1 cut(s)	535
BceAI	ACGGC	1 cut(s)	482
BciT130I	CCWGG	3 cut(s)	297, 438, 479
BclI	TGATCA	1 cut(s)	406
BfaI	CTAG	4 cut(s)	227, 395, 714, 887
BfmI	CTRYAG	2 cut(s)	635, 825
BisI	GCNGC	3 cut(s)	207, 387, 884
BlsI	GCNGC	3 cut(s)	208, 388, 885
Bme1390I	CCNGG	3 cut(s)	297, 438, 479
Bme18I	GGWCC	2 cut(s)	353, 652
BmgT120I	GGNCC	3 cut(s)	353, 509, 652
BmrFI	CCNGG	3 cut(s)	297, 438, 479
BmsI	GCATC	1 cut(s)	875
BpmI	CTGGAG	1 cut(s)	819
Bpu10I	CCTNAGC	1 cut(s)	279
Bsa29I	ATCGAT	1 cut(s)	573
BsaAI	YACGTR	2 cut(s)	368, 708
BsaBI	GATNNNNATC	1 cut(s)	854
BsaHI	GRCGYC	1 cut(s)	682
BsaJI	CCNNGG	3 cut(s)	305, 478, 789
BsaXI	ACNNNNNCTCC	2 cut(s)	43, 73
Bse1I	ACTGG	4 cut(s)	349, 399, 515, 802
Bse3DI	GCAATG	2 cut(s)	169, 360
Bse8I	GATNNNNATC	1 cut(s)	854
BseBI	CCWGG	3 cut(s)	297, 438, 479
BseCI	ATCGAT	1 cut(s)	573
BseDI	CCNNGG	3 cut(s)	305, 478, 789
BseGI	GGATG	1 cut(s)	184
BseJI	GATNNNNATC	1 cut(s)	854
BseMI	GCAATG	2 cut(s)	169, 360
BseMII	CTCAG	2 cut(s)	270, 714
BseNI	ACTGG	4 cut(s)	349, 399, 515, 802
BseSI	GKGCMC	1 cut(s)	304
BseXI	GCAGC	3 cut(s)	193, 373, 895
BsgI	GTGCAG	1 cut(s)	158
Bsh1285I	CGRYCG	1 cut(s)	573
BshFI	GGCC	4 cut(s)	477, 510, 712, 813
BshVI	ATCGAT	1 cut(s)	573
BsiEI	CGRYCG	1 cut(s)	573
BsiHKAI	GWGCWC	2 cut(s)	226, 304
BslFI	GGGAC	1 cut(s)	702
BsmFI	GGGAC	1 cut(s)	702
BsnI	GGCC	4 cut(s)	477, 510, 712, 813
Bsp1286I	GDGCHC	2 cut(s)	226, 304
Bsp1407I	TGTACA	1 cut(s)	780
Bsp143I	GATC	4 cut(s)	253, 334, 406, 570
BspACI	CCGC	1 cut(s)	512
BspANI	GGCC	4 cut(s)	477, 510, 712, 813
BspCNI	CTCAG	2 cut(s)	271, 713
BspDI	ATCGAT	1 cut(s)	573
BspMAI	CTGCAG	1 cut(s)	639
BspPI	GGATC	1 cut(s)	342
BsrDI	GCAATG	2 cut(s)	169, 360
BsrGI	TGTACA	1 cut(s)	780
BsrI	ACTGG	4 cut(s)	349, 399, 515, 802
BssECI	CCNNGG	3 cut(s)	305, 478, 789
BssMI	GATC	4 cut(s)	253, 334, 406, 570
BssNI	GRCGYC	1 cut(s)	682
BssT1I	CCWWGG	2 cut(s)	305, 789
Bst2UI	CCWGG	3 cut(s)	297, 438, 479
Bst4CI	ACNGT	3 cut(s)	238, 665, 845
BstACI	GRCGYC	1 cut(s)	682
BstAPI	GCANNNNNTGC	2 cut(s)	318, 371
BstAUI	TGTACA	1 cut(s)	780
BstBAI	YACGTR	2 cut(s)	368, 708
BstC8I	GCNNGC	2 cut(s)	475, 512
BstDEI	CTNAG	4 cut(s)	112, 279, 692, 700
BstF5I	GGATG	1 cut(s)	184
BstHHI	GCGC	2 cut(s)	84, 312
BstKTI	GATC	4 cut(s)	256, 337, 409, 573
BstMBI	GATC	4 cut(s)	253, 334, 406, 570
BstMCI	CGRYCG	1 cut(s)	573
BstMWI	GCNNNNNNNGC	4 cut(s)	318, 371, 395, 800
BstNI	CCWGG	3 cut(s)	297, 438, 479
BstSCI	CCNGG	3 cut(s)	295, 436, 477
BstSFI	CTRYAG	2 cut(s)	635, 825
BstSLI	GKGCMC	1 cut(s)	304
BstV1I	GCAGC	3 cut(s)	193, 373, 895
BstX2I	RGATCY	1 cut(s)	334
BstYI	RGATCY	1 cut(s)	334
Bsu15I	ATCGAT	1 cut(s)	573
BsuRI	GGCC	4 cut(s)	477, 510, 712, 813
BsuTUI	ATCGAT	1 cut(s)	573
BtsCI	GGATG	1 cut(s)	184
BtsIMutI	CAGTG	2 cut(s)	243, 841
Cac8I	GCNNGC	2 cut(s)	475, 512
CaiI	CAGNNNCTG	1 cut(s)	843
CfoI	GCGC	2 cut(s)	84, 312
Cfr13I	GGNCC	3 cut(s)	353, 509, 652
ClaI	ATCGAT	1 cut(s)	573
CsiI	ACCWGGT	1 cut(s)	295
Csp6I	GTAC	2 cut(s)	640, 781
CspCI	CAANNNNNGTGG	2 cut(s)	219, 254
CviQI	GTAC	2 cut(s)	640, 781
DdeI	CTNAG	4 cut(s)	112, 279, 692, 700
DpnI	GATC	4 cut(s)	255, 336, 408, 572
DpnII	GATC	4 cut(s)	253, 334, 406, 570
DraI	TTTAAA	3 cut(s)	63, 616, 946
DraIII	CACNNNGTG	1 cut(s)	299
DrdI	GACNNNNNNGTC	1 cut(s)	455
DseDI	GACNNNNNNGTC	1 cut(s)	455
EaeI	YGGCCR	1 cut(s)	811
Eco130I	CCWWGG	2 cut(s)	305, 789
Eco32I	GATATC	3 cut(s)	103, 604, 937
Eco47I	GGWCC	2 cut(s)	353, 652
Eco57I	CTGAAG	1 cut(s)	890
EcoO109I	RGGNCCY	1 cut(s)	652
EcoRI	GAATTC	1 cut(s)	93
EcoRII	CCWGG	3 cut(s)	295, 436, 477
EcoRV	GATATC	3 cut(s)	103, 604, 937
EcoT14I	CCWWGG	2 cut(s)	305, 789
ErhI	CCWWGG	2 cut(s)	305, 789
FalI	AAGNNNNNCTT	2 cut(s)	255, 287
FaqI	GGGAC	1 cut(s)	702
FauI	CCCGC	1 cut(s)	519
FbaI	TGATCA	1 cut(s)	406
Fnu4HI	GCNGC	3 cut(s)	207, 387, 884
FokI	GGATG	1 cut(s)	191
Fsp4HI	GCNGC	3 cut(s)	207, 387, 884
FspAI	RTGCGCAY	1 cut(s)	83
FspBI	CTAG	4 cut(s)	227, 395, 714, 887
FspI	TGCGCA	1 cut(s)	83
GlaI	GCGC	2 cut(s)	83, 311
GluI	GCNGC	3 cut(s)	207, 387, 884
GsuI	CTGGAG	1 cut(s)	819
HaeIII	GGCC	4 cut(s)	477, 510, 712, 813
HhaI	GCGC	2 cut(s)	84, 312
Hin1I	GRCGYC	1 cut(s)	682
Hin6I	GCGC	2 cut(s)	82, 310
HinP1I	GCGC	2 cut(s)	82, 310
HinfI	GANTC	4 cut(s)	5, 39, 548, 892
Hpy166II	GTNNAC	3 cut(s)	302, 781, 835
Hpy188I	TCNGA	3 cut(s)	849, 878, 909
Hpy188III	TCNNGA	3 cut(s)	98, 340, 534
Hpy8I	GTNNAC	3 cut(s)	302, 781, 835
HpyCH4III	ACNGT	3 cut(s)	238, 665, 845
HpyCH4IV	ACGT	3 cut(s)	367, 682, 707
HpyCH4V	TGCA	8 cut(s)	35, 139, 209, 302, 365, 504, 637, 866
HpyF10VI	GCNNNNNNNGC	4 cut(s)	318, 371, 395, 800
HpyF3I	CTNAG	4 cut(s)	112, 279, 692, 700
HpySE526I	ACGT	3 cut(s)	367, 682, 707
Hsp92I	GRCGYC	1 cut(s)	682
HspAI	GCGC	2 cut(s)	82, 310
Ksp22I	TGATCA	1 cut(s)	406
Kzo9I	GATC	4 cut(s)	253, 334, 406, 570
LmnI	GCTCC	1 cut(s)	800
Lsp1109I	GCAGC	3 cut(s)	193, 373, 895
LweI	GCATC	1 cut(s)	875
MabI	ACCWGGT	1 cut(s)	295
MaeI	CTAG	4 cut(s)	227, 395, 714, 887
MaeII	ACGT	3 cut(s)	367, 682, 707
MaeIII	GTNAC	3 cut(s)	73, 695, 703
MalI	GATC	4 cut(s)	255, 336, 408, 572
MboI	GATC	4 cut(s)	253, 334, 406, 570
MboII	GAAGA	4 cut(s)	205, 543, 607, 741
MflI	RGATCY	1 cut(s)	334
MhlI	GDGCHC	2 cut(s)	226, 304
MlsI	TGGCCA	1 cut(s)	813
MluCI	AATT	5 cut(s)	9, 93, 198, 348, 432
MluNI	TGGCCA	1 cut(s)	813
MmeI	TCCRAC	2 cut(s)	130, 272
MnlI	CCTC	5 cut(s)	134, 274, 316, 696, 905
Mox20I	TGGCCA	1 cut(s)	813
MscI	TGGCCA	1 cut(s)	813
Msp20I	TGGCCA	1 cut(s)	813
MspR9I	CCNGG	3 cut(s)	297, 438, 479
MvaI	CCWGG	3 cut(s)	297, 438, 479
MwoI	GCNNNNNNNGC	4 cut(s)	318, 371, 395, 800
NdeII	GATC	4 cut(s)	253, 334, 406, 570
NsbI	TGCGCA	1 cut(s)	83
PcsI	WCGNNNNNNNCGW	1 cut(s)	579
PfeI	GAWTC	4 cut(s)	5, 39, 548, 892
PkrI	GCNGC	3 cut(s)	208, 388, 885
Ple19I	CGATCG	1 cut(s)	573
Ppu21I	YACGTR	2 cut(s)	368, 708
PpuMI	RGGWCCY	1 cut(s)	652
PshBI	ATTAAT	1 cut(s)	381
Psp5II	RGGWCCY	1 cut(s)	652
Psp6I	CCWGG	3 cut(s)	295, 436, 477
PspGI	CCWGG	3 cut(s)	295, 436, 477
PspPI	GGNCC	3 cut(s)	353, 509, 652
PspPPI	RGGWCCY	1 cut(s)	652
PstI	CTGCAG	1 cut(s)	639
PstNI	CAGNNNCTG	1 cut(s)	843
PsuI	RGATCY	1 cut(s)	334
PvuI	CGATCG	1 cut(s)	573
RsaI	GTAC	2 cut(s)	641, 782
RsaNI	GTAC	2 cut(s)	640, 781
SatI	GCNGC	3 cut(s)	207, 387, 884
Sau3AI	GATC	4 cut(s)	253, 334, 406, 570
Sau96I	GGNCC	3 cut(s)	353, 509, 652
ScrFI	CCNGG	3 cut(s)	297, 438, 479
SduI	GDGCHC	2 cut(s)	226, 304
SexAI	ACCWGGT	1 cut(s)	295
SfaNI	GCATC	1 cut(s)	875
SfcI	CTRYAG	2 cut(s)	635, 825
SinI	GGWCC	2 cut(s)	353, 652
Sse9I	AATT	5 cut(s)	9, 93, 198, 348, 432
SsiI	CCGC	1 cut(s)	512
SspI	AATATT	1 cut(s)	454
SspMI	CTAG	4 cut(s)	227, 395, 714, 887
StyD4I	CCNGG	3 cut(s)	295, 436, 477
StyI	CCWWGG	2 cut(s)	305, 789
TaaI	ACNGT	3 cut(s)	238, 665, 845
TaiI	ACGT	3 cut(s)	370, 685, 710
TaqI	TCGA	1 cut(s)	573
TasI	AATT	5 cut(s)	9, 93, 198, 348, 432
TatI	WGTACW	2 cut(s)	639, 780
TfiI	GAWTC	4 cut(s)	5, 39, 548, 892
TscAI	CASTG	2 cut(s)	243, 848
TseI	GCWGC	3 cut(s)	206, 386, 883
TspDTI	ATGAA	1 cut(s)	160
TspRI	CASTG	2 cut(s)	243, 848
VneI	GTGCAC	1 cut(s)	300
VpaK11BI	GGWCC	2 cut(s)	353, 652
VspI	ATTAAT	1 cut(s)	381
XapI	RAATTY	3 cut(s)	93, 198, 432
XspI	CTAG	4 cut(s)	227, 395, 714, 887
ZraI	GACGTC	1 cut(s)	683

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.