Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0024750

Physical Location & Seq

Genomic Coordinates Reverse (-)

5635408 .. 5638830

Gene Structure 3423 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG028000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGCGCACAGCAAGAATTCAAGATATCCAACCCTTAGAAAATGACCTCCATATCAAAGTGCAGATTAAGACCTTATCTGTGGGCAATGACTTCATTGGGGATGTTCCTTTAACGAAGAAAATTCTTGCTGCATTAACTAAAGGTGCTCTAGCAATCACAGTGGCAAATCCAACTGATCTTGTAAAAGTTAGACTTCAAGCTGAGGGAAAACTACCACCAGGTGCACCAAGGCGCACTAAATGCGTATTCCACCATTTTGAGACAGTTGGGGATCTCTGGACTGGAATTGCACCTAACATTGCACGTAATGCTATCATTAATGCTGCTGAACTAGCCAGTTATGATCAAGTGAAGCAGACACTTTTGGAAATTCCTGGCTTTAAGGACAATATTGTCGCTCATCTTTTTGCTGGCCTGGGGGTAGGTTTCTTTGCCGTTTGCATTGGCCCACCAGTTGATGTGTACATAACAAAGGACCTTTGCTACTGTATCATCTACCAAAGACGTCCTCTACTTAGTAACTCAGTTACGTGGCCTAGTCCCACCTTTTCCAAACAAAGACTTCCAAGTTCTTCCAAGTGCCAAGCAAACTCAACCTATGTGTACAAGCCCTTCGCAACTGGAGCATATATTGGCCAAAAGACAGCTATAGATGTCCACAGCCACTGTCAGATATATATCAAGGTTGCATCTCTTATCCGAAAGCAGCTAGAGAATCTGGCAGAACTTCAGAGAGGAATAAAGGGAAAGAAAAATGATATCCACTTTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005773 GO:0005774 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006839 GO:0006865 GO:0008150 GO:0008152 GO:0008509 GO:0008514 GO:0009506 GO:0009507 GO:0009536 GO:0009853 GO:0009987 GO:0015075 GO:0015171 GO:0015318 GO:0015672 GO:0015711 GO:0015849 GO:0016020 GO:0016021 GO:0017077 GO:0019866 GO:0022857 GO:0030054 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071702 GO:0071705 GO:0098588 GO:0098655 GO:0098656 GO:0098660 GO:0098662 GO:0098805 GO:1902600 GO:1903825 GO:1905039 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

257

Amino Acids

28.38

Weight (kDa)

9.53

Isoelectric Point (pI)

26.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	35 - 122	2.9e-14	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0024750)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0317861
rosa_samantha	Rh1CG028000
rosa_wichuraiana	Rw1G002130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	392
AatII	GACGTC	1 cut(s)	508
Acc16I	TGCGCA	1 cut(s)	5
AclWI	GGATC	1 cut(s)	279
AcoI	YGGCCR	1 cut(s)	634
AcsI	RAATTY	3 cut(s)	15, 120, 369
AcuI	CTGAAG	1 cut(s)	713
AcyI	GRCGYC	1 cut(s)	505
AdeI	CACNNNGTG	1 cut(s)	221
AfaI	GTAC	2 cut(s)	464, 605
AgsI	TTSAA	2 cut(s)	20, 197
AjnI	CCWGG	3 cut(s)	217, 373, 414
AluBI	AGCT	3 cut(s)	200, 647, 709
AluI	AGCT	3 cut(s)	200, 647, 709
Alw21I	GWGCWC	2 cut(s)	148, 226
Alw26I	GTCTC	1 cut(s)	254
Alw44I	GTGCAC	1 cut(s)	222
AlwI	GGATC	1 cut(s)	279
AlwNI	CAGNNNCTG	1 cut(s)	666
AoxI	GGCC	4 cut(s)	412, 445, 533, 634
ApaLI	GTGCAC	1 cut(s)	222
ApeKI	GCWGC	3 cut(s)	128, 323, 706
ApoI	RAATTY	3 cut(s)	15, 120, 369
AseI	ATTAAT	1 cut(s)	318
AspLEI	GCGC	2 cut(s)	6, 234
AspS9I	GGNCC	2 cut(s)	446, 475
AvaII	GGWCC	1 cut(s)	475
BaeGI	GKGCMC	1 cut(s)	226
BalI	TGGCCA	1 cut(s)	636
BarI	GAAGNNNNNNTAC	2 cut(s)	596, 628
Bbv12I	GWGCWC	2 cut(s)	148, 226
BbvCI	CCTCAGC	1 cut(s)	201
BbvI	GCAGC	3 cut(s)	115, 310, 718
BceAI	ACGGC	1 cut(s)	419
BciT130I	CCWGG	3 cut(s)	219, 375, 416
BclI	TGATCA	1 cut(s)	343
BcoDI	GTCTC	1 cut(s)	254
BfaI	CTAG	4 cut(s)	149, 332, 537, 710
BfmI	CTRYAG	1 cut(s)	648
BisI	GCNGC	3 cut(s)	129, 324, 707
BlsI	GCNGC	3 cut(s)	130, 325, 708
Bme1390I	CCNGG	3 cut(s)	219, 375, 416
Bme18I	GGWCC	1 cut(s)	475
BmgT120I	GGNCC	2 cut(s)	446, 475
BmrFI	CCNGG	3 cut(s)	219, 375, 416
BmsI	GCATC	1 cut(s)	698
BpmI	CTGGAG	1 cut(s)	642
Bpu10I	CCTNAGC	1 cut(s)	201
BsaAI	YACGTR	2 cut(s)	305, 531
BsaBI	GATNNNNATC	1 cut(s)	677
BsaHI	GRCGYC	1 cut(s)	505
BsaJI	CCNNGG	2 cut(s)	227, 415
Bse1I	ACTGG	4 cut(s)	286, 336, 452, 625
Bse3DI	GCAATG	2 cut(s)	91, 297
Bse8I	GATNNNNATC	1 cut(s)	677
BseBI	CCWGG	3 cut(s)	219, 375, 416
BseDI	CCNNGG	2 cut(s)	227, 415
BseGI	GGATG	1 cut(s)	106
BseJI	GATNNNNATC	1 cut(s)	677
BseMI	GCAATG	2 cut(s)	91, 297
BseMII	CTCAG	2 cut(s)	192, 537
BseNI	ACTGG	4 cut(s)	286, 336, 452, 625
BseSI	GKGCMC	1 cut(s)	226
BseXI	GCAGC	3 cut(s)	115, 310, 718
BsgI	GTGCAG	1 cut(s)	80
BshFI	GGCC	4 cut(s)	414, 447, 535, 636
BsiHKAI	GWGCWC	2 cut(s)	148, 226
BslFI	GGGAC	1 cut(s)	525
BsmAI	GTCTC	1 cut(s)	254
BsmFI	GGGAC	1 cut(s)	525
BsnI	GGCC	4 cut(s)	414, 447, 535, 636
Bsp1286I	GDGCHC	2 cut(s)	148, 226
Bsp1407I	TGTACA	2 cut(s)	462, 603
Bsp143I	GATC	3 cut(s)	175, 271, 343
BspANI	GGCC	4 cut(s)	414, 447, 535, 636
BspCNI	CTCAG	2 cut(s)	193, 536
BspPI	GGATC	1 cut(s)	279
BsrDI	GCAATG	2 cut(s)	91, 297
BsrGI	TGTACA	2 cut(s)	462, 603
BsrI	ACTGG	4 cut(s)	286, 336, 452, 625
BssECI	CCNNGG	2 cut(s)	227, 415
BssMI	GATC	3 cut(s)	175, 271, 343
BssNI	GRCGYC	1 cut(s)	505
BssT1I	CCWWGG	1 cut(s)	227
Bst2UI	CCWGG	3 cut(s)	219, 375, 416
Bst4CI	ACNGT	4 cut(s)	160, 265, 488, 668
BstACI	GRCGYC	1 cut(s)	505
BstAPI	GCANNNNNTGC	2 cut(s)	240, 308
BstAUI	TGTACA	2 cut(s)	462, 603
BstBAI	YACGTR	2 cut(s)	305, 531
BstC8I	GCNNGC	1 cut(s)	412
BstDEI	CTNAG	4 cut(s)	34, 201, 515, 523
BstF5I	GGATG	1 cut(s)	106
BstHHI	GCGC	2 cut(s)	6, 234
BstKTI	GATC	3 cut(s)	178, 274, 346
BstMAI	GTCTC	1 cut(s)	254
BstMBI	GATC	3 cut(s)	175, 271, 343
BstMWI	GCNNNNNNNGC	4 cut(s)	240, 308, 332, 623
BstNI	CCWGG	3 cut(s)	219, 375, 416
BstSCI	CCNGG	3 cut(s)	217, 373, 414
BstSFI	CTRYAG	1 cut(s)	648
BstSLI	GKGCMC	1 cut(s)	226
BstV1I	GCAGC	3 cut(s)	115, 310, 718
BstX2I	RGATCY	1 cut(s)	271
BstYI	RGATCY	1 cut(s)	271
BsuRI	GGCC	4 cut(s)	414, 447, 535, 636
BtsCI	GGATG	1 cut(s)	106
BtsIMutI	CAGTG	2 cut(s)	165, 664
Cac8I	GCNNGC	1 cut(s)	412
CaiI	CAGNNNCTG	1 cut(s)	666
CfoI	GCGC	2 cut(s)	6, 234
Cfr13I	GGNCC	2 cut(s)	446, 475
CsiI	ACCWGGT	1 cut(s)	217
Csp6I	GTAC	2 cut(s)	463, 604
CspCI	CAANNNNNGTGG	2 cut(s)	141, 176
CviQI	GTAC	2 cut(s)	463, 604
DdeI	CTNAG	4 cut(s)	34, 201, 515, 523
DpnI	GATC	3 cut(s)	177, 273, 345
DpnII	GATC	3 cut(s)	175, 271, 343
DraI	TTTAAA	1 cut(s)	769
DraIII	CACNNNGTG	1 cut(s)	221
DrdI	GACNNNNNNGTC	1 cut(s)	392
DseDI	GACNNNNNNGTC	1 cut(s)	392
EaeI	YGGCCR	1 cut(s)	634
Eco130I	CCWWGG	1 cut(s)	227
Eco32I	GATATC	2 cut(s)	25, 760
Eco47I	GGWCC	1 cut(s)	475
Eco57I	CTGAAG	1 cut(s)	713
EcoO109I	RGGNCCY	1 cut(s)	475
EcoRI	GAATTC	1 cut(s)	15
EcoRII	CCWGG	3 cut(s)	217, 373, 414
EcoRV	GATATC	2 cut(s)	25, 760
EcoT14I	CCWWGG	1 cut(s)	227
ErhI	CCWWGG	1 cut(s)	227
FaiI	YATR	9 cut(s)	51, 342, 467, 600, 628, 630, 650, 676, 678
FalI	AAGNNNNNCTT	2 cut(s)	177, 209
FaqI	GGGAC	1 cut(s)	525
FbaI	TGATCA	1 cut(s)	343
Fnu4HI	GCNGC	3 cut(s)	129, 324, 707
FokI	GGATG	1 cut(s)	113
Fsp4HI	GCNGC	3 cut(s)	129, 324, 707
FspAI	RTGCGCAY	1 cut(s)	5
FspBI	CTAG	4 cut(s)	149, 332, 537, 710
FspI	TGCGCA	1 cut(s)	5
GlaI	GCGC	2 cut(s)	5, 233
GluI	GCNGC	3 cut(s)	129, 324, 707
GsuI	CTGGAG	1 cut(s)	642
HaeIII	GGCC	4 cut(s)	414, 447, 535, 636
HhaI	GCGC	2 cut(s)	6, 234
Hin1I	GRCGYC	1 cut(s)	505
Hin6I	GCGC	2 cut(s)	4, 232
HinP1I	GCGC	2 cut(s)	4, 232
HinfI	GANTC	1 cut(s)	715
Hpy166II	GTNNAC	4 cut(s)	224, 463, 604, 658
Hpy188I	TCNGA	3 cut(s)	672, 701, 732
Hpy188III	TCNNGA	2 cut(s)	20, 277
Hpy8I	GTNNAC	4 cut(s)	224, 463, 604, 658
HpyAV	CCTTC	1 cut(s)	622
HpyCH4III	ACNGT	4 cut(s)	160, 265, 488, 668
HpyCH4IV	ACGT	3 cut(s)	304, 505, 530
HpyCH4V	TGCA	7 cut(s)	61, 131, 224, 290, 302, 441, 689
HpyF10VI	GCNNNNNNNGC	4 cut(s)	240, 308, 332, 623
HpyF3I	CTNAG	4 cut(s)	34, 201, 515, 523
HpySE526I	ACGT	3 cut(s)	304, 505, 530
Hsp92I	GRCGYC	1 cut(s)	505
HspAI	GCGC	2 cut(s)	4, 232
Ksp22I	TGATCA	1 cut(s)	343
Kzo9I	GATC	3 cut(s)	175, 271, 343
LmnI	GCTCC	1 cut(s)	623
Lsp1109I	GCAGC	3 cut(s)	115, 310, 718
LweI	GCATC	1 cut(s)	698
MabI	ACCWGGT	1 cut(s)	217
MaeI	CTAG	4 cut(s)	149, 332, 537, 710
MaeII	ACGT	3 cut(s)	304, 505, 530
MaeIII	GTNAC	2 cut(s)	518, 526
MalI	GATC	3 cut(s)	177, 273, 345
MboI	GATC	3 cut(s)	175, 271, 343
MboII	GAAGA	2 cut(s)	127, 564
MflI	RGATCY	1 cut(s)	271
MhlI	GDGCHC	2 cut(s)	148, 226
MlsI	TGGCCA	1 cut(s)	636
MluCI	AATT	4 cut(s)	15, 120, 285, 369
MluNI	TGGCCA	1 cut(s)	636
MmeI	TCCRAC	2 cut(s)	52, 194
MnlI	CCTC	4 cut(s)	56, 196, 519, 728
Mox20I	TGGCCA	1 cut(s)	636
MscI	TGGCCA	1 cut(s)	636
MseI	TTAA	6 cut(s)	66, 110, 134, 318, 381, 768
Msp20I	TGGCCA	1 cut(s)	636
MspR9I	CCNGG	3 cut(s)	219, 375, 416
MvaI	CCWGG	3 cut(s)	219, 375, 416
MwoI	GCNNNNNNNGC	4 cut(s)	240, 308, 332, 623
NdeII	GATC	3 cut(s)	175, 271, 343
NsbI	TGCGCA	1 cut(s)	5
PfeI	GAWTC	1 cut(s)	715
PkrI	GCNGC	3 cut(s)	130, 325, 708
Ppu21I	YACGTR	2 cut(s)	305, 531
PpuMI	RGGWCCY	1 cut(s)	475
PshBI	ATTAAT	1 cut(s)	318
Psp5II	RGGWCCY	1 cut(s)	475
Psp6I	CCWGG	3 cut(s)	217, 373, 414
PspGI	CCWGG	3 cut(s)	217, 373, 414
PspPI	GGNCC	2 cut(s)	446, 475
PspPPI	RGGWCCY	1 cut(s)	475
PstNI	CAGNNNCTG	1 cut(s)	666
PsuI	RGATCY	1 cut(s)	271
RsaI	GTAC	2 cut(s)	464, 605
RsaNI	GTAC	2 cut(s)	463, 604
SaqAI	TTAA	6 cut(s)	66, 110, 134, 318, 381, 768
SatI	GCNGC	3 cut(s)	129, 324, 707
Sau3AI	GATC	3 cut(s)	175, 271, 343
Sau96I	GGNCC	2 cut(s)	446, 475
ScrFI	CCNGG	3 cut(s)	219, 375, 416
SduI	GDGCHC	2 cut(s)	148, 226
SexAI	ACCWGGT	1 cut(s)	217
SfaNI	GCATC	1 cut(s)	698
SfcI	CTRYAG	1 cut(s)	648
SinI	GGWCC	1 cut(s)	475
Sse9I	AATT	4 cut(s)	15, 120, 285, 369
SspI	AATATT	1 cut(s)	391
SspMI	CTAG	4 cut(s)	149, 332, 537, 710
StyD4I	CCNGG	3 cut(s)	217, 373, 414
StyI	CCWWGG	1 cut(s)	227
TaaI	ACNGT	4 cut(s)	160, 265, 488, 668
TaiI	ACGT	3 cut(s)	307, 508, 533
TasI	AATT	4 cut(s)	15, 120, 285, 369
TatI	WGTACW	2 cut(s)	462, 603
TfiI	GAWTC	1 cut(s)	715
Tru1I	TTAA	6 cut(s)	66, 110, 134, 318, 381, 768
Tru9I	TTAA	6 cut(s)	66, 110, 134, 318, 381, 768
TscAI	CASTG	2 cut(s)	165, 671
TseI	GCWGC	3 cut(s)	128, 323, 706
TspDTI	ATGAA	1 cut(s)	82
TspRI	CASTG	2 cut(s)	165, 671
VneI	GTGCAC	1 cut(s)	222
VpaK11BI	GGWCC	1 cut(s)	475
VspI	ATTAAT	1 cut(s)	318
XapI	RAATTY	3 cut(s)	15, 120, 369
XspI	CTAG	4 cut(s)	149, 332, 537, 710
ZraI	GACGTC	1 cut(s)	506

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.