Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0029699

Physical Location & Seq

Genomic Coordinates Reverse (-)

8657045 .. 8660858

Gene Structure 3814 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 180 bp

ATGGACCCAAAAGCCGTGAAATCGGACCTAGTCCTCATCCTCGACTACGGCTCCCAATACACCCACCTCATCGCTCGCCGCATCCGATCCCTCTCCGTCTTCTACCTCACCATCTTCAGCACCAGCCCCCTCAAGCCCATCACATGGAGACAAATTGGGTTTAAACCCCAGAGTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003921 GO:0003922 GO:0006139 GO:0006163 GO:0006164 GO:0006177 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009116 GO:0009117 GO:0009119 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009163 GO:0009165 GO:0009167 GO:0009168 GO:0009259 GO:0009260 GO:0009987 GO:0016874 GO:0016879 GO:0016884 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0034404 GO:0034641 GO:0034654 GO:0042278 GO:0042451 GO:0042455 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0046037 GO:0046128 GO:0046129 GO:0046390 GO:0046483 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901068 GO:1901070 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00230 ko00983 ko01100 map00230 map00983 map01100

Pfam Domains

Protein Families

GATase GMP_synt_C NAD_synthase

Protein Analysis

59

Amino Acids

6.81

Weight (kDa)

10.11

Isoelectric Point (pI)

46.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029699)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0321151 RchiOBHm_Chr7g0219111

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	144
AciI	CCGC	1 cut(s)	79
AclWI	GGATC	1 cut(s)	81
AcuI	CTGAAG	1 cut(s)	100
AfiI	CCNNNNNNNGG	1 cut(s)	144
Alw26I	GTCTC	1 cut(s)	142
AlwI	GGATC	1 cut(s)	81
AspS9I	GGNCC	2 cut(s)	4, 25
AsuHPI	GGTGA	1 cut(s)	100
AvaII	GGWCC	2 cut(s)	4, 25
BbsI	GAAGAC	1 cut(s)	91
BccI	CCATC	2 cut(s)	119, 146
BceAI	ACGGC	1 cut(s)	64
BcoDI	GTCTC	1 cut(s)	142
BfaI	CTAG	1 cut(s)	29
BisI	GCNGC	1 cut(s)	79
BlsI	GCNGC	1 cut(s)	80
Bme18I	GGWCC	2 cut(s)	4, 25
BmgT120I	GGNCC	2 cut(s)	4, 25
BmiI	GGNNCC	2 cut(s)	6, 52
BmsI	GCATC	1 cut(s)	90
BpiI	GAAGAC	1 cut(s)	91
BpuEI	CTTGAG	1 cut(s)	116
BsaXI	ACNNNNNCTCC	2 cut(s)	35, 65
Bsc4I	CCNNNNNNNGG	1 cut(s)	144
BseGI	GGATG	2 cut(s)	36, 81
BseLI	CCNNNNNNNGG	1 cut(s)	144
BslI	CCNNNNNNNGG	1 cut(s)	144
BsmAI	GTCTC	1 cut(s)	142
Bsp143I	GATC	1 cut(s)	86
BspACI	CCGC	1 cut(s)	79
BspLI	GGNNCC	2 cut(s)	6, 52
BspPI	GGATC	1 cut(s)	81
BssMI	GATC	1 cut(s)	86
BstC8I	GCNNGC	1 cut(s)	76
BstF5I	GGATG	2 cut(s)	36, 81
BstKTI	GATC	1 cut(s)	89
BstMAI	GTCTC	1 cut(s)	142
BstMBI	GATC	1 cut(s)	86
BstV2I	GAAGAC	1 cut(s)	91
BtgZI	GCGATG	1 cut(s)	55
BtsCI	GGATG	2 cut(s)	36, 81
Cac8I	GCNNGC	1 cut(s)	76
Cfr13I	GGNCC	2 cut(s)	4, 25
CviAII	CATG	1 cut(s)	144
CviJI	RGCY	4 cut(s)	14, 51, 126, 136
CviKI_1	RGCY	4 cut(s)	14, 51, 126, 136
DpnI	GATC	1 cut(s)	88
DpnII	GATC	1 cut(s)	86
DraI	TTTAAA	1 cut(s)	163
Eco47I	GGWCC	2 cut(s)	4, 25
Eco57I	CTGAAG	1 cut(s)	100
FaeI	CATG	1 cut(s)	147
FaiI	YATR	1 cut(s)	145
FatI	CATG	1 cut(s)	143
Fnu4HI	GCNGC	1 cut(s)	79
FokI	GGATG	2 cut(s)	23, 68
Fsp4HI	GCNGC	1 cut(s)	79
FspBI	CTAG	1 cut(s)	29
GluI	GCNGC	1 cut(s)	79
Hin1II	CATG	1 cut(s)	147
HphI	GGTGA	1 cut(s)	100
Hpy188I	TCNGA	2 cut(s)	25, 86
Hsp92II	CATG	1 cut(s)	147
Kzo9I	GATC	1 cut(s)	86
LmnI	GCTCC	1 cut(s)	56
LpnPI	CCDG	1 cut(s)	136
LweI	GCATC	1 cut(s)	90
MaeI	CTAG	1 cut(s)	29
MalI	GATC	1 cut(s)	88
MboI	GATC	1 cut(s)	86
MboII	GAAGA	2 cut(s)	91, 106
MluCI	AATT	2 cut(s)	153, 175
MnlI	CCTC	6 cut(s)	44, 50, 77, 101, 116, 140
MseI	TTAA	1 cut(s)	162
MssI	GTTTAAAC	1 cut(s)	163
NdeII	GATC	1 cut(s)	86
NlaIII	CATG	1 cut(s)	147
NlaIV	GGNNCC	2 cut(s)	6, 52
PcsI	WCGNNNNNNNCGW	1 cut(s)	82
PflFI	GACNNNGTC	1 cut(s)	29
PflMI	CCANNNNNTGG	1 cut(s)	144
PkrI	GCNGC	1 cut(s)	80
PmeI	GTTTAAAC	1 cut(s)	163
PspN4I	GGNNCC	2 cut(s)	6, 52
PspPI	GGNCC	2 cut(s)	4, 25
PsyI	GACNNNGTC	1 cut(s)	29
SaqAI	TTAA	1 cut(s)	162
SatI	GCNGC	1 cut(s)	79
Sau3AI	GATC	1 cut(s)	86
Sau96I	GGNCC	2 cut(s)	4, 25
SetI	ASST	3 cut(s)	30, 69, 108
SfaNI	GCATC	1 cut(s)	90
SgeI	CNNG	7 cut(s)	28, 41, 53, 87, 135, 145, 156
SinI	GGWCC	2 cut(s)	4, 25
SmlI	CTYRAG	1 cut(s)	131
SmoI	CTYRAG	1 cut(s)	131
Sse9I	AATT	2 cut(s)	153, 175
SsiI	CCGC	1 cut(s)	79
SspMI	CTAG	1 cut(s)	29
TaqI	TCGA	1 cut(s)	42
TasI	AATT	2 cut(s)	153, 175
TauI	GCSGC	1 cut(s)	81
Tru1I	TTAA	1 cut(s)	162
Tru9I	TTAA	1 cut(s)	162
TspGWI	ACGGA	1 cut(s)	85
Tth111I	GACNNNGTC	1 cut(s)	29
Van91I	CCANNNNNTGG	1 cut(s)	144
VpaK11BI	GGWCC	2 cut(s)	4, 25
XspI	CTAG	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.