Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0029699

Physical Location & Seq

Genomic Coordinates Forward (+)

37341652 .. 37346838

Gene Structure 5187 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ19611

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGGACCCAAAAGCTGTGAAATCGGACCTAGTCCTCATCCTCGACTACGGCTCCCAATACACCCACCTCATCCGATCCCTCTCCGTCTTCTACCTCACCAGCCCCCTCAAGCCCATCACCGACCTTAATCCTCCCCGAGAGCCCCACTCCATCCACACCGAGGTTCACCTTCAGCCATCATTTCCTTTGACTTTCCGTCGCAGTGTGCAGTTCTCAAATTGCCGAAGTTATGACAGCCATGGGAGATTGGAGCCAGCCATGTCTGACCAGGAGCACCACATGGAGAGCCATCCACAGCAGCCTAGCCAGAGCCCATCCATGGAGAGAAAAAAATCATGTGGTTTTCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003921 GO:0003922 GO:0006139 GO:0006163 GO:0006164 GO:0006177 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009116 GO:0009117 GO:0009119 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009163 GO:0009165 GO:0009167 GO:0009168 GO:0009259 GO:0009260 GO:0009987 GO:0016874 GO:0016879 GO:0016884 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0034404 GO:0034641 GO:0034654 GO:0042278 GO:0042451 GO:0042455 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0046037 GO:0046128 GO:0046129 GO:0046390 GO:0046483 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901068 GO:1901070 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00230 ko00983 ko01100 map00230 map00983 map01100

Pfam Domains

Protein Families

GATase GMP_synt_C NAD_synthase

Protein Analysis

116

Amino Acids

13.37

Weight (kDa)

7.89

Isoelectric Point (pI)

77.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029699)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0321151 RchiOBHm_Chr7g0219111

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	69
AcuI	CTGAAG	1 cut(s)	155
AfiI	CCNNNNNNNGG	2 cut(s)	160, 319
AhdI	GACNNNNNGTC	1 cut(s)	195
AjnI	CCWGG	1 cut(s)	267
AluBI	AGCT	1 cut(s)	14
AluI	AGCT	1 cut(s)	14
Alw21I	GWGCWC	1 cut(s)	276
AlwI	GGATC	1 cut(s)	69
Ama87I	CYCGRG	1 cut(s)	135
ApeKI	GCWGC	1 cut(s)	298
AspS9I	GGNCC	2 cut(s)	4, 25
AsuHPI	GGTGA	3 cut(s)	88, 109, 158
AvaI	CYCGRG	1 cut(s)	135
AvaII	GGWCC	2 cut(s)	4, 25
BanII	GRGCYC	2 cut(s)	144, 314
BbsI	GAAGAC	1 cut(s)	79
Bbv12I	GWGCWC	1 cut(s)	276
BbvI	GCAGC	1 cut(s)	310
BccI	CCATC	5 cut(s)	122, 158, 184, 297, 322
BceAI	ACGGC	1 cut(s)	64
BciT130I	CCWGG	1 cut(s)	269
BfaI	CTAG	2 cut(s)	29, 303
BisI	GCNGC	1 cut(s)	299
BlsI	GCNGC	1 cut(s)	300
Bme1390I	CCNGG	1 cut(s)	269
Bme18I	GGWCC	2 cut(s)	4, 25
BmeRI	GACNNNNNGTC	1 cut(s)	195
BmeT110I	CYCGRG	1 cut(s)	135
BmgT120I	GGNCC	2 cut(s)	4, 25
BmiI	GGNNCC	3 cut(s)	6, 52, 252
BmrFI	CCNGG	1 cut(s)	269
BpiI	GAAGAC	1 cut(s)	79
BplI	GAGNNNNNCTC	2 cut(s)	131, 163
BpuEI	CTTGAG	1 cut(s)	92
BsaJI	CCNNGG	3 cut(s)	159, 238, 318
BsaXI	ACNNNNNCTCC	2 cut(s)	35, 65
Bsc4I	CCNNNNNNNGG	2 cut(s)	160, 319
BseBI	CCWGG	1 cut(s)	269
BseDI	CCNNGG	3 cut(s)	159, 238, 318
BseGI	GGATG	5 cut(s)	36, 69, 150, 289, 314
BseLI	CCNNNNNNNGG	2 cut(s)	160, 319
BseXI	GCAGC	1 cut(s)	310
BsgI	GTGCAG	1 cut(s)	227
BsiHKAI	GWGCWC	1 cut(s)	276
BsiHKCI	CYCGRG	1 cut(s)	135
BslI	CCNNNNNNNGG	2 cut(s)	160, 319
BsoBI	CYCGRG	1 cut(s)	135
Bsp1286I	GDGCHC	3 cut(s)	144, 276, 314
Bsp143I	GATC	1 cut(s)	74
Bsp19I	CCATGG	2 cut(s)	238, 318
BspLI	GGNNCC	3 cut(s)	6, 52, 252
BspPI	GGATC	1 cut(s)	69
BssECI	CCNNGG	3 cut(s)	159, 238, 318
BssMI	GATC	1 cut(s)	74
BssT1I	CCWWGG	2 cut(s)	238, 318
Bst2UI	CCWGG	1 cut(s)	269
BstC8I	GCNNGC	1 cut(s)	255
BstDSI	CCRYGG	2 cut(s)	238, 318
BstF5I	GGATG	5 cut(s)	36, 69, 150, 289, 314
BstKTI	GATC	1 cut(s)	77
BstMBI	GATC	1 cut(s)	74
BstNI	CCWGG	1 cut(s)	269
BstSCI	CCNGG	1 cut(s)	267
BstV1I	GCAGC	1 cut(s)	310
BstV2I	GAAGAC	1 cut(s)	79
BtgI	CCRYGG	2 cut(s)	238, 318
BtsCI	GGATG	5 cut(s)	36, 69, 150, 289, 314
BtsI	GCAGTG	1 cut(s)	208
BtsIMutI	CAGTG	1 cut(s)	208
Cac8I	GCNNGC	1 cut(s)	255
Cfr13I	GGNCC	2 cut(s)	4, 25
CviAII	CATG	5 cut(s)	239, 259, 280, 319, 336
DpnI	GATC	1 cut(s)	76
DpnII	GATC	1 cut(s)	74
DriI	GACNNNNNGTC	1 cut(s)	195
Eam1105I	GACNNNNNGTC	1 cut(s)	195
Eco130I	CCWWGG	2 cut(s)	238, 318
Eco24I	GRGCYC	2 cut(s)	144, 314
Eco47I	GGWCC	2 cut(s)	4, 25
Eco57I	CTGAAG	1 cut(s)	155
Eco88I	CYCGRG	1 cut(s)	135
EcoRII	CCWGG	1 cut(s)	267
EcoT14I	CCWWGG	2 cut(s)	238, 318
EcoT38I	GRGCYC	2 cut(s)	144, 314
ErhI	CCWWGG	2 cut(s)	238, 318
FaeI	CATG	5 cut(s)	242, 262, 283, 322, 339
FaiI	YATR	6 cut(s)	231, 240, 260, 281, 320, 337
FatI	CATG	5 cut(s)	238, 258, 279, 318, 335
Fnu4HI	GCNGC	1 cut(s)	299
FokI	GGATG	5 cut(s)	23, 56, 137, 276, 301
FriOI	GRGCYC	2 cut(s)	144, 314
Fsp4HI	GCNGC	1 cut(s)	299
FspBI	CTAG	2 cut(s)	29, 303
GluI	GCNGC	1 cut(s)	299
Hin1II	CATG	5 cut(s)	242, 262, 283, 322, 339
HphI	GGTGA	3 cut(s)	88, 109, 158
Hpy166II	GTNNAC	1 cut(s)	166
Hpy188I	TCNGA	3 cut(s)	25, 74, 265
Hpy8I	GTNNAC	1 cut(s)	166
Hpy99I	CGWCG	1 cut(s)	201
HpyAV	CCTTC	1 cut(s)	179
HpyCH4V	TGCA	1 cut(s)	208
Hsp92II	CATG	5 cut(s)	242, 262, 283, 322, 339
Kzo9I	GATC	1 cut(s)	74
LmnI	GCTCC	3 cut(s)	56, 250, 271
LpnPI	CCDG	5 cut(s)	112, 254, 267, 281, 320
Lsp1109I	GCAGC	1 cut(s)	310
MaeI	CTAG	2 cut(s)	29, 303
MalI	GATC	1 cut(s)	76
MboI	GATC	1 cut(s)	74
MboII	GAAGA	1 cut(s)	79
MhlI	GDGCHC	3 cut(s)	144, 276, 314
MluCI	AATT	1 cut(s)	217
MnlI	CCTC	8 cut(s)	44, 50, 77, 89, 104, 116, 141, 154
MseI	TTAA	2 cut(s)	126, 349
MspR9I	CCNGG	1 cut(s)	269
MvaI	CCWGG	1 cut(s)	269
NcoI	CCATGG	2 cut(s)	238, 318
NdeII	GATC	1 cut(s)	74
NlaIII	CATG	5 cut(s)	242, 262, 283, 322, 339
NlaIV	GGNNCC	3 cut(s)	6, 52, 252
PflFI	GACNNNGTC	1 cut(s)	29
PkrI	GCNGC	1 cut(s)	300
Psp6I	CCWGG	1 cut(s)	267
PspGI	CCWGG	1 cut(s)	267
PspN4I	GGNNCC	3 cut(s)	6, 52, 252
PspPI	GGNCC	2 cut(s)	4, 25
PsyI	GACNNNGTC	1 cut(s)	29
SaqAI	TTAA	2 cut(s)	126, 349
SatI	GCNGC	1 cut(s)	299
Sau3AI	GATC	1 cut(s)	74
Sau96I	GGNCC	2 cut(s)	4, 25
ScrFI	CCNGG	1 cut(s)	269
SduI	GDGCHC	3 cut(s)	144, 276, 314
SetI	ASST	7 cut(s)	16, 30, 69, 96, 126, 165, 171
SinI	GGWCC	2 cut(s)	4, 25
SmlI	CTYRAG	1 cut(s)	107
SmoI	CTYRAG	1 cut(s)	107
Sse9I	AATT	1 cut(s)	217
SspMI	CTAG	2 cut(s)	29, 303
StyD4I	CCNGG	1 cut(s)	267
StyI	CCWWGG	2 cut(s)	238, 318
TaqI	TCGA	1 cut(s)	42
TasI	AATT	1 cut(s)	217
Tru1I	TTAA	2 cut(s)	126, 349
Tru9I	TTAA	2 cut(s)	126, 349
TscAI	CASTG	1 cut(s)	208
TseI	GCWGC	1 cut(s)	298
TspGWI	ACGGA	2 cut(s)	73, 185
TspRI	CASTG	1 cut(s)	208
Tth111I	GACNNNGTC	1 cut(s)	29
VpaK11BI	GGWCC	2 cut(s)	4, 25
XspI	CTAG	2 cut(s)	29, 303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.