Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0022628

Physical Location & Seq

Genomic Coordinates Reverse (-)

9555934 .. 9557155

Gene Structure 1222 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGGTGGTAAAACCCTGGGGTCACCCAAGAGAGGTGTTGGGAGGTGAGGATCTATTGTTGGTCCTTGATGCTGACAATATTCCCATGGTTATTGCATTTGTACATAGCGGGATGCAGGACATCATGCCTATTGGTGCCAGCTTCCCGAGGATTGGCAAGACGGTGACTGTGGTTATTGGTGATCCAATCTACTTTGATGATTTGCTAAATAATGAAGGAGCAAAGCATTTATCAAGAGGAAAGTTATATGATGCAGTATCCTCAAGAATCGGTCATCGACTACGTCAACTGAAAGTTCAGGTTGACAAATTGACTCAAGGGACACAATTACTAAATGATGGTTCACTGATGGAAGAAACTCCGGAACTAGTTGTTGCCGGTACACAAGAGCCCAGGTCTTTTGATCGGTTCCGAGTGGGTTTCTCAAAAGATGGCTGGATTGCATCAAGGATGCGTAGTTTTATGGAACCTACCGAGCTGATGAGATTTGTAGCCAGAGGCTTATTTATGAACCGTAGAGCAGTTGAAACCTCTGAAAGTGGTAGTAGAAGGGTTGGCCCGTTGAAAGCATGGAACCAATTTCTTGAAGCCAATGTACTACCAAGATGGAATTGTGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006996 GO:0007005 GO:0007006 GO:0007007 GO:0007275 GO:0007507 GO:0008150 GO:0008152 GO:0008374 GO:0009987 GO:0016020 GO:0016043 GO:0016740 GO:0016746 GO:0016747 GO:0019637 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0032048 GO:0032501 GO:0032502 GO:0035965 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046471 GO:0046486 GO:0048513 GO:0048731 GO:0048856 GO:0061024 GO:0071704 GO:0071840 GO:0072359

KEGG Pathways

Metabolic & Signaling

ko00564 map00564

Pfam Domains

Protein Families

Acyltransferase

Protein Analysis

206

Amino Acids

23.14

Weight (kDa)

8.82

Isoelectric Point (pI)

34.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022628)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0322061 RchiOBHm_Chr3g0455741
rosa_samantha	Rh1AG049200
rosa_wichuraiana	Rw1G004530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	134
AccIII	TCCGGA	1 cut(s)	361
AciI	CCGC	1 cut(s)	108
AclWI	GGATC	2 cut(s)	57, 176
AfaI	GTAC	3 cut(s)	102, 382, 597
AfiI	CCNNNNNNNGG	2 cut(s)	31, 152
AgsI	TTSAA	3 cut(s)	527, 565, 587
AhlI	ACTAGT	1 cut(s)	367
AjnI	CCWGG	2 cut(s)	14, 392
AluBI	AGCT	2 cut(s)	141, 478
AluI	AGCT	2 cut(s)	141, 478
AlwI	GGATC	2 cut(s)	57, 176
Ama87I	CYCGRG	1 cut(s)	145
Aor13HI	TCCGGA	1 cut(s)	361
AoxI	GGCC	1 cut(s)	556
AspS9I	GGNCC	2 cut(s)	61, 557
AsuHPI	GGTGA	4 cut(s)	14, 56, 175, 191
AvaI	CYCGRG	1 cut(s)	145
AvaII	GGWCC	1 cut(s)	61
BanI	GGYRCC	1 cut(s)	134
BanII	GRGCYC	1 cut(s)	393
BarI	GAAGNNNNNNTAC	2 cut(s)	579, 611
BccI	CCATC	4 cut(s)	332, 343, 425, 600
BciT130I	CCWGG	2 cut(s)	16, 394
BciVI	GTATCC	1 cut(s)	268
BcuI	ACTAGT	1 cut(s)	367
BfaI	CTAG	1 cut(s)	368
BfuI	GTATCC	1 cut(s)	268
Bme1390I	CCNGG	2 cut(s)	16, 394
Bme18I	GGWCC	1 cut(s)	61
BmeT110I	CYCGRG	1 cut(s)	145
BmgT120I	GGNCC	2 cut(s)	61, 557
BmiI	GGNNCC	4 cut(s)	136, 410, 468, 575
BmrFI	CCNGG	2 cut(s)	16, 394
BmsI	GCATC	5 cut(s)	58, 102, 241, 441, 452
BpuEI	CTTGAG	2 cut(s)	247, 300
BsaJI	CCNNGG	5 cut(s)	14, 15, 84, 146, 392
BsaWI	WCCGGW	1 cut(s)	361
Bsc4I	CCNNNNNNNGG	2 cut(s)	31, 152
Bse118I	RCCGGY	1 cut(s)	377
BseAI	TCCGGA	1 cut(s)	361
BseBI	CCWGG	2 cut(s)	16, 394
BseDI	CCNNGG	5 cut(s)	14, 15, 84, 146, 392
BseGI	GGATG	2 cut(s)	117, 456
BseLI	CCNNNNNNNGG	2 cut(s)	31, 152
BshFI	GGCC	1 cut(s)	558
BshNI	GGYRCC	1 cut(s)	134
BsiHKCI	CYCGRG	1 cut(s)	145
BsiSI	CCGG	2 cut(s)	362, 378
BslFI	GGGAC	1 cut(s)	334
BslI	CCNNNNNNNGG	2 cut(s)	31, 152
BsmFI	GGGAC	1 cut(s)	334
BsnI	GGCC	1 cut(s)	558
BsoBI	CYCGRG	1 cut(s)	145
Bsp1286I	GDGCHC	1 cut(s)	393
Bsp13I	TCCGGA	1 cut(s)	361
Bsp1407I	TGTACA	1 cut(s)	100
Bsp143I	GATC	3 cut(s)	49, 181, 403
Bsp19I	CCATGG	1 cut(s)	84
BspACI	CCGC	1 cut(s)	108
BspANI	GGCC	1 cut(s)	558
BspEI	TCCGGA	1 cut(s)	361
BspLI	GGNNCC	4 cut(s)	136, 410, 468, 575
BspPI	GGATC	2 cut(s)	57, 176
BspT107I	GGYRCC	1 cut(s)	134
BsrFI	RCCGGY	1 cut(s)	377
BsrGI	TGTACA	1 cut(s)	100
BssAI	RCCGGY	1 cut(s)	377
BssECI	CCNNGG	5 cut(s)	14, 15, 84, 146, 392
BssMI	GATC	3 cut(s)	49, 181, 403
BssT1I	CCWWGG	1 cut(s)	84
Bst2UI	CCWGG	2 cut(s)	16, 394
Bst4CI	ACNGT	3 cut(s)	163, 169, 515
BstAUI	TGTACA	1 cut(s)	100
BstC8I	GCNNGC	1 cut(s)	139
BstDSI	CCRYGG	1 cut(s)	84
BstEII	GGTNACC	1 cut(s)	20
BstF5I	GGATG	2 cut(s)	117, 456
BstKTI	GATC	3 cut(s)	52, 184, 406
BstMBI	GATC	3 cut(s)	49, 181, 403
BstNI	CCWGG	2 cut(s)	16, 394
BstPI	GGTNACC	1 cut(s)	20
BstSCI	CCNGG	2 cut(s)	14, 392
BstX2I	RGATCY	1 cut(s)	49
BstYI	RGATCY	1 cut(s)	49
BsuI	GTATCC	1 cut(s)	268
BsuRI	GGCC	1 cut(s)	558
BtgI	CCRYGG	1 cut(s)	84
BtsCI	GGATG	2 cut(s)	117, 456
BtsIMutI	CAGTG	1 cut(s)	344
Cac8I	GCNNGC	1 cut(s)	139
Cfr10I	RCCGGY	1 cut(s)	377
Cfr13I	GGNCC	2 cut(s)	61, 557
Csp6I	GTAC	3 cut(s)	101, 381, 596
CviAII	CATG	3 cut(s)	85, 124, 570
CviJI	RGCY	8 cut(s)	141, 391, 435, 478, 494, 501, 558, 590
CviKI_1	RGCY	8 cut(s)	141, 391, 435, 478, 494, 501, 558, 590
CviQI	GTAC	3 cut(s)	101, 381, 596
DpnI	GATC	3 cut(s)	51, 183, 405
DpnII	GATC	3 cut(s)	49, 181, 403
Eco130I	CCWWGG	1 cut(s)	84
Eco24I	GRGCYC	1 cut(s)	393
Eco47I	GGWCC	1 cut(s)	61
Eco88I	CYCGRG	1 cut(s)	145
Eco91I	GGTNACC	1 cut(s)	20
EcoO65I	GGTNACC	1 cut(s)	20
EcoRII	CCWGG	2 cut(s)	14, 392
EcoT14I	CCWWGG	1 cut(s)	84
EcoT38I	GRGCYC	1 cut(s)	393
ErhI	CCWWGG	1 cut(s)	84
FaeI	CATG	3 cut(s)	88, 127, 573
FaiI	YATR	8 cut(s)	86, 105, 125, 247, 249, 464, 509, 571
FaqI	GGGAC	1 cut(s)	334
FatI	CATG	3 cut(s)	84, 123, 569
FauI	CCCGC	1 cut(s)	101
FokI	GGATG	2 cut(s)	124, 463
FriOI	GRGCYC	1 cut(s)	393
FspBI	CTAG	1 cut(s)	368
HaeIII	GGCC	1 cut(s)	558
HapII	CCGG	2 cut(s)	362, 378
Hin1II	CATG	3 cut(s)	88, 127, 573
HincII	GTYRAC	2 cut(s)	287, 304
HindII	GTYRAC	2 cut(s)	287, 304
HinfI	GANTC	2 cut(s)	267, 313
HpaII	CCGG	2 cut(s)	362, 378
HphI	GGTGA	4 cut(s)	14, 56, 175, 191
Hpy166II	GTNNAC	4 cut(s)	287, 304, 344, 383
Hpy188I	TCNGA	2 cut(s)	413, 535
Hpy188III	TCNNGA	5 cut(s)	145, 234, 264, 362, 584
Hpy8I	GTNNAC	4 cut(s)	287, 304, 344, 383
HpyAV	CCTTC	2 cut(s)	209, 543
HpyCH4III	ACNGT	3 cut(s)	163, 169, 515
HpyCH4IV	ACGT	1 cut(s)	283
HpyCH4V	TGCA	4 cut(s)	95, 115, 254, 443
HpySE526I	ACGT	1 cut(s)	283
Hsp92II	CATG	3 cut(s)	88, 127, 573
Kpn2I	TCCGGA	1 cut(s)	361
Kzo9I	GATC	3 cut(s)	49, 181, 403
LmnI	GCTCC	1 cut(s)	218
LweI	GCATC	5 cut(s)	58, 102, 241, 441, 452
MaeI	CTAG	1 cut(s)	368
MaeII	ACGT	1 cut(s)	283
MaeIII	GTNAC	2 cut(s)	20, 163
MalI	GATC	3 cut(s)	51, 183, 405
MboI	GATC	3 cut(s)	49, 181, 403
MboII	GAAGA	1 cut(s)	365
MflI	RGATCY	1 cut(s)	49
MhlI	GDGCHC	1 cut(s)	393
MluCI	AATT	4 cut(s)	308, 326, 578, 610
MlyI	GAGTC	1 cut(s)	307
MnlI	CCTC	8 cut(s)	25, 35, 40, 141, 230, 271, 491, 541
MroI	TCCGGA	1 cut(s)	361
MspI	CCGG	2 cut(s)	362, 378
MspR9I	CCNGG	2 cut(s)	16, 394
MvaI	CCWGG	2 cut(s)	16, 394
NcoI	CCATGG	1 cut(s)	84
NdeII	GATC	3 cut(s)	49, 181, 403
NlaIII	CATG	3 cut(s)	88, 127, 573
NlaIV	GGNNCC	4 cut(s)	136, 410, 468, 575
NmuCI	GTSAC	2 cut(s)	20, 163
PasI	CCCWGGG	1 cut(s)	15
PfeI	GAWTC	1 cut(s)	267
PflFI	GACNNNGTC	1 cut(s)	282
PleI	GAGTC	1 cut(s)	307
PpsI	GAGTC	1 cut(s)	307
Psp6I	CCWGG	2 cut(s)	14, 392
PspEI	GGTNACC	1 cut(s)	20
PspGI	CCWGG	2 cut(s)	14, 392
PspN4I	GGNNCC	4 cut(s)	136, 410, 468, 575
PspPI	GGNCC	2 cut(s)	61, 557
PsuI	RGATCY	1 cut(s)	49
PsyI	GACNNNGTC	1 cut(s)	282
RsaI	GTAC	3 cut(s)	102, 382, 597
RsaNI	GTAC	3 cut(s)	101, 381, 596
Sau3AI	GATC	3 cut(s)	49, 181, 403
Sau96I	GGNCC	2 cut(s)	61, 557
SchI	GAGTC	1 cut(s)	307
ScrFI	CCNGG	2 cut(s)	16, 394
SduI	GDGCHC	1 cut(s)	393
SetI	ASST	9 cut(s)	36, 46, 143, 286, 303, 398, 472, 480, 533
SfaNI	GCATC	5 cut(s)	58, 102, 241, 441, 452
SinI	GGWCC	1 cut(s)	61
SmlI	CTYRAG	2 cut(s)	262, 315
SmoI	CTYRAG	2 cut(s)	262, 315
SpeI	ACTAGT	1 cut(s)	367
Sse9I	AATT	4 cut(s)	308, 326, 578, 610
SsiI	CCGC	1 cut(s)	108
SspI	AATATT	1 cut(s)	79
SspMI	CTAG	1 cut(s)	368
StyD4I	CCNGG	2 cut(s)	14, 392
StyI	CCWWGG	1 cut(s)	84
TaaI	ACNGT	3 cut(s)	163, 169, 515
TaiI	ACGT	1 cut(s)	286
TaqI	TCGA	1 cut(s)	277
TaqII	GACCGA	1 cut(s)	260
TasI	AATT	4 cut(s)	308, 326, 578, 610
TatI	WGTACW	2 cut(s)	100, 595
TfiI	GAWTC	1 cut(s)	267
TscAI	CASTG	1 cut(s)	351
TseFI	GTSAC	2 cut(s)	20, 163
Tsp45I	GTSAC	2 cut(s)	20, 163
TspDTI	ATGAA	2 cut(s)	228, 524
TspRI	CASTG	1 cut(s)	351
Tth111I	GACNNNGTC	1 cut(s)	282
VpaK11BI	GGWCC	1 cut(s)	61
XspI	CTAG	1 cut(s)	368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.