Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0022628

Physical Location & Seq

Genomic Coordinates Reverse (-)

8698741 .. 8699413

Gene Structure 673 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G004530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGTTATTGCATTTGTACATAGCGGGATGCAGGACATCATGCCTATTGGTGCCAGCTTCCCGAGGATTGGCAAGACGGTGACTGTGGTTATTGGTGATCCAATCTACTTTGATGATTTGCTAAATAATGAAGGAGCAAAGCATTTATCAAGAGGAAAGTTATATGATGCAGTATCCTCAAGAATCGGTCATCGACTACGTCAACTGAAAGTTCAGGTTGACAAATTGACTCAAGGGACACAATTACTAAATGATGGTTCACTGATGGAAGAAACTCCGGAACTAGTTGTTGCCGGTACACAAGAGCCCAGGTCTTTTGATCGGTTCCGAGTGGGTTTCTCAAAAGATGGCTGGATTGCATCAAGGATGCGTAGTTTTATGGAACCTACCGAGCTGATGAGATTTGCAGCCAGAGGCTTATTTATGAACCGTAGAGCAGTTGAAACCTCTGAAAGTGGTAGTAGAAGGGTTGGCCCGTTGAAAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006996 GO:0007005 GO:0007006 GO:0007007 GO:0007275 GO:0007507 GO:0008150 GO:0008152 GO:0008374 GO:0009987 GO:0016020 GO:0016043 GO:0016740 GO:0016746 GO:0016747 GO:0019637 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0032048 GO:0032501 GO:0032502 GO:0035965 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046471 GO:0046486 GO:0048513 GO:0048731 GO:0048856 GO:0061024 GO:0071704 GO:0071840 GO:0072359

KEGG Pathways

Metabolic & Signaling

ko00564 map00564

Pfam Domains

Protein Families

Acyltransferase

Protein Analysis

162

Amino Acids

18.1

Weight (kDa)

9.88

Isoelectric Point (pI)

35.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Publication-ready

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Orthologous Genes (Group: OG0022628)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0322061 RchiOBHm_Chr3g0455741
rosa_samantha	Rh1AG049200
rosa_wichuraiana	Rw1G004530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	50
AccIII	TCCGGA	1 cut(s)	277
AciI	CCGC	1 cut(s)	24
AclWI	GGATC	1 cut(s)	92
AfaI	GTAC	2 cut(s)	18, 298
AfiI	CCNNNNNNNGG	1 cut(s)	68
AgsI	TTSAA	2 cut(s)	443, 481
AhlI	ACTAGT	1 cut(s)	283
AjnI	CCWGG	1 cut(s)	308
AluBI	AGCT	2 cut(s)	57, 394
AluI	AGCT	2 cut(s)	57, 394
AlwI	GGATC	1 cut(s)	92
Ama87I	CYCGRG	1 cut(s)	61
Aor13HI	TCCGGA	1 cut(s)	277
AoxI	GGCC	1 cut(s)	472
ApeKI	GCWGC	1 cut(s)	407
AspS9I	GGNCC	1 cut(s)	473
AsuHPI	GGTGA	2 cut(s)	91, 107
AvaI	CYCGRG	1 cut(s)	61
BanI	GGYRCC	1 cut(s)	50
BanII	GRGCYC	1 cut(s)	309
BbvI	GCAGC	1 cut(s)	419
BccI	CCATC	3 cut(s)	248, 259, 341
BciT130I	CCWGG	1 cut(s)	310
BciVI	GTATCC	1 cut(s)	184
BcuI	ACTAGT	1 cut(s)	283
BfaI	CTAG	1 cut(s)	284
BfuI	GTATCC	1 cut(s)	184
BisI	GCNGC	1 cut(s)	408
BlsI	GCNGC	1 cut(s)	409
Bme1390I	CCNGG	1 cut(s)	310
BmeT110I	CYCGRG	1 cut(s)	61
BmgT120I	GGNCC	1 cut(s)	473
BmiI	GGNNCC	3 cut(s)	52, 326, 384
BmrFI	CCNGG	1 cut(s)	310
BmsI	GCATC	4 cut(s)	18, 157, 357, 368
BpuEI	CTTGAG	2 cut(s)	163, 216
BsaJI	CCNNGG	2 cut(s)	62, 308
BsaWI	WCCGGW	1 cut(s)	277
Bsc4I	CCNNNNNNNGG	1 cut(s)	68
Bse118I	RCCGGY	1 cut(s)	293
BseAI	TCCGGA	1 cut(s)	277
BseBI	CCWGG	1 cut(s)	310
BseDI	CCNNGG	2 cut(s)	62, 308
BseGI	GGATG	2 cut(s)	33, 372
BseLI	CCNNNNNNNGG	1 cut(s)	68
BseXI	GCAGC	1 cut(s)	419
BshFI	GGCC	1 cut(s)	474
BshNI	GGYRCC	1 cut(s)	50
BsiHKCI	CYCGRG	1 cut(s)	61
BsiSI	CCGG	2 cut(s)	278, 294
BslFI	GGGAC	1 cut(s)	250
BslI	CCNNNNNNNGG	1 cut(s)	68
BsmFI	GGGAC	1 cut(s)	250
BsnI	GGCC	1 cut(s)	474
BsoBI	CYCGRG	1 cut(s)	61
Bsp1286I	GDGCHC	1 cut(s)	309
Bsp13I	TCCGGA	1 cut(s)	277
Bsp1407I	TGTACA	1 cut(s)	16
Bsp143I	GATC	2 cut(s)	97, 319
BspACI	CCGC	1 cut(s)	24
BspANI	GGCC	1 cut(s)	474
BspEI	TCCGGA	1 cut(s)	277
BspLI	GGNNCC	3 cut(s)	52, 326, 384
BspPI	GGATC	1 cut(s)	92
BspT107I	GGYRCC	1 cut(s)	50
BsrFI	RCCGGY	1 cut(s)	293
BsrGI	TGTACA	1 cut(s)	16
BssAI	RCCGGY	1 cut(s)	293
BssECI	CCNNGG	2 cut(s)	62, 308
BssMI	GATC	2 cut(s)	97, 319
Bst2UI	CCWGG	1 cut(s)	310
Bst4CI	ACNGT	3 cut(s)	79, 85, 431
BstAUI	TGTACA	1 cut(s)	16
BstC8I	GCNNGC	1 cut(s)	55
BstF5I	GGATG	2 cut(s)	33, 372
BstKTI	GATC	2 cut(s)	100, 322
BstMBI	GATC	2 cut(s)	97, 319
BstNI	CCWGG	1 cut(s)	310
BstSCI	CCNGG	1 cut(s)	308
BstV1I	GCAGC	1 cut(s)	419
BsuI	GTATCC	1 cut(s)	184
BsuRI	GGCC	1 cut(s)	474
BtsCI	GGATG	2 cut(s)	33, 372
BtsIMutI	CAGTG	1 cut(s)	260
Cac8I	GCNNGC	1 cut(s)	55
Cfr10I	RCCGGY	1 cut(s)	293
Cfr13I	GGNCC	1 cut(s)	473
Csp6I	GTAC	2 cut(s)	17, 297
CviAII	CATG	2 cut(s)	40, 486
CviJI	RGCY	7 cut(s)	57, 307, 351, 394, 410, 417, 474
CviKI_1	RGCY	7 cut(s)	57, 307, 351, 394, 410, 417, 474
CviQI	GTAC	2 cut(s)	17, 297
DpnI	GATC	2 cut(s)	99, 321
DpnII	GATC	2 cut(s)	97, 319
Eco24I	GRGCYC	1 cut(s)	309
Eco88I	CYCGRG	1 cut(s)	61
EcoRII	CCWGG	1 cut(s)	308
EcoT38I	GRGCYC	1 cut(s)	309
FaeI	CATG	2 cut(s)	43, 489
FaiI	YATR	7 cut(s)	21, 41, 163, 165, 380, 425, 487
FaqI	GGGAC	1 cut(s)	250
FatI	CATG	2 cut(s)	39, 485
FauI	CCCGC	1 cut(s)	17
Fnu4HI	GCNGC	1 cut(s)	408
FokI	GGATG	2 cut(s)	40, 379
FriOI	GRGCYC	1 cut(s)	309
Fsp4HI	GCNGC	1 cut(s)	408
FspBI	CTAG	1 cut(s)	284
GluI	GCNGC	1 cut(s)	408
HaeIII	GGCC	1 cut(s)	474
HapII	CCGG	2 cut(s)	278, 294
Hin1II	CATG	2 cut(s)	43, 489
HincII	GTYRAC	2 cut(s)	203, 220
HindII	GTYRAC	2 cut(s)	203, 220
HinfI	GANTC	2 cut(s)	183, 229
HpaII	CCGG	2 cut(s)	278, 294
HphI	GGTGA	2 cut(s)	91, 107
Hpy166II	GTNNAC	4 cut(s)	203, 220, 260, 299
Hpy188I	TCNGA	2 cut(s)	329, 451
Hpy188III	TCNNGA	4 cut(s)	61, 150, 180, 278
Hpy8I	GTNNAC	4 cut(s)	203, 220, 260, 299
HpyAV	CCTTC	2 cut(s)	125, 459
HpyCH4III	ACNGT	3 cut(s)	79, 85, 431
HpyCH4IV	ACGT	1 cut(s)	199
HpyCH4V	TGCA	5 cut(s)	11, 31, 170, 359, 407
HpySE526I	ACGT	1 cut(s)	199
Hsp92II	CATG	2 cut(s)	43, 489
Kpn2I	TCCGGA	1 cut(s)	277
Kzo9I	GATC	2 cut(s)	97, 319
LmnI	GCTCC	1 cut(s)	134
LpnPI	CCDG	9 cut(s)	17, 67, 200, 291, 295, 307, 322, 337, 424
Lsp1109I	GCAGC	1 cut(s)	419
LweI	GCATC	4 cut(s)	18, 157, 357, 368
MaeI	CTAG	1 cut(s)	284
MaeII	ACGT	1 cut(s)	199
MaeIII	GTNAC	1 cut(s)	79
MalI	GATC	2 cut(s)	99, 321
MboI	GATC	2 cut(s)	97, 319
MboII	GAAGA	1 cut(s)	281
MhlI	GDGCHC	1 cut(s)	309
MluCI	AATT	2 cut(s)	224, 242
MlyI	GAGTC	1 cut(s)	223
MnlI	CCTC	5 cut(s)	57, 146, 187, 407, 457
MroI	TCCGGA	1 cut(s)	277
MspI	CCGG	2 cut(s)	278, 294
MspR9I	CCNGG	1 cut(s)	310
MvaI	CCWGG	1 cut(s)	310
NdeII	GATC	2 cut(s)	97, 319
NlaIII	CATG	2 cut(s)	43, 489
NlaIV	GGNNCC	3 cut(s)	52, 326, 384
NmuCI	GTSAC	1 cut(s)	79
PfeI	GAWTC	1 cut(s)	183
PflFI	GACNNNGTC	1 cut(s)	198
PkrI	GCNGC	1 cut(s)	409
PleI	GAGTC	1 cut(s)	223
PpsI	GAGTC	1 cut(s)	223
Psp6I	CCWGG	1 cut(s)	308
PspGI	CCWGG	1 cut(s)	308
PspN4I	GGNNCC	3 cut(s)	52, 326, 384
PspPI	GGNCC	1 cut(s)	473
PsyI	GACNNNGTC	1 cut(s)	198
RsaI	GTAC	2 cut(s)	18, 298
RsaNI	GTAC	2 cut(s)	17, 297
SatI	GCNGC	1 cut(s)	408
Sau3AI	GATC	2 cut(s)	97, 319
Sau96I	GGNCC	1 cut(s)	473
SchI	GAGTC	1 cut(s)	223
ScrFI	CCNGG	1 cut(s)	310
SduI	GDGCHC	1 cut(s)	309
SetI	ASST	7 cut(s)	59, 202, 219, 314, 388, 396, 449
SfaNI	GCATC	4 cut(s)	18, 157, 357, 368
SmlI	CTYRAG	2 cut(s)	178, 231
SmoI	CTYRAG	2 cut(s)	178, 231
SpeI	ACTAGT	1 cut(s)	283
Sse9I	AATT	2 cut(s)	224, 242
SsiI	CCGC	1 cut(s)	24
SspMI	CTAG	1 cut(s)	284
StyD4I	CCNGG	1 cut(s)	308
TaaI	ACNGT	3 cut(s)	79, 85, 431
TaiI	ACGT	1 cut(s)	202
TaqI	TCGA	1 cut(s)	193
TaqII	GACCGA	1 cut(s)	176
TasI	AATT	2 cut(s)	224, 242
TatI	WGTACW	1 cut(s)	16
TfiI	GAWTC	1 cut(s)	183
TscAI	CASTG	1 cut(s)	267
TseFI	GTSAC	1 cut(s)	79
TseI	GCWGC	1 cut(s)	407
Tsp45I	GTSAC	1 cut(s)	79
TspDTI	ATGAA	2 cut(s)	144, 440
TspRI	CASTG	1 cut(s)	267
Tth111I	GACNNNGTC	1 cut(s)	198
XspI	CTAG	1 cut(s)	284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.