Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0022628

Physical Location & Seq

Genomic Coordinates Forward (+)

5365117 .. 5365831

Gene Structure 715 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ42266

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGAGGGTGACGGTGGTTATTGGTGATCCAATCTACTTTGATGATTTGCTAAATAATGAACGAGCAAAGCATTTATCAAGAGGAAAGTTATATGATGCAGTATCCTCAAGAATTGGTCATCGACTACGTCAACTGAAAGTTCAGGTTGACAAACTGACTCAAGGGACACAATTACTAAATGATGGTTCACTGATGGAAGAAACTCCAGAACAACTAGTTGTTGTCGGTACACAAGAGCCCAGGTCTTTTGATCGGTTCCGAGTGGGTTTCTCAAAAGATGGCTGGATGCGTAATTTTATGGAACCTACTGAGCTGATGGGATTTGCAGCCAGGGGCTTATTTATGAACCGTAGAGCAGTTGAAACCTCAGAAAGTGGTAGTAGAAGGGTTGGCCCGTTGAAAGCATGGAACCAATTTCTTGAAGCCGATGTACTACCAAGATGGAACTTTGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006996 GO:0007005 GO:0007006 GO:0007007 GO:0007275 GO:0007507 GO:0008150 GO:0008152 GO:0008374 GO:0009987 GO:0016020 GO:0016043 GO:0016740 GO:0016746 GO:0016747 GO:0019637 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0032048 GO:0032501 GO:0032502 GO:0035965 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046471 GO:0046486 GO:0048513 GO:0048731 GO:0048856 GO:0061024 GO:0071704 GO:0071840 GO:0072359

KEGG Pathways

Metabolic & Signaling

ko00564 map00564

Pfam Domains

Protein Families

Acyltransferase

Protein Analysis

151

Amino Acids

17.35

Weight (kDa)

9.51

Isoelectric Point (pI)

35.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0022628)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0322061 RchiOBHm_Chr3g0455741
rosa_samantha	Rh1AG049200
rosa_wichuraiana	Rw1G004530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	20
AfaI	GTAC	2 cut(s)	229, 432
AgsI	TTSAA	3 cut(s)	362, 400, 422
AhlI	ACTAGT	1 cut(s)	214
AjnI	CCWGG	2 cut(s)	239, 329
AluBI	AGCT	1 cut(s)	313
AluI	AGCT	1 cut(s)	313
AlwI	GGATC	1 cut(s)	20
AoxI	GGCC	1 cut(s)	391
ApeKI	GCWGC	1 cut(s)	326
AspS9I	GGNCC	1 cut(s)	392
AsuHPI	GGTGA	2 cut(s)	19, 35
BanII	GRGCYC	1 cut(s)	240
BarI	GAAGNNNNNNTAC	2 cut(s)	414, 446
BbvI	GCAGC	1 cut(s)	338
BccI	CCATC	5 cut(s)	176, 187, 272, 310, 435
BciT130I	CCWGG	2 cut(s)	241, 331
BciVI	GTATCC	1 cut(s)	112
BcuI	ACTAGT	1 cut(s)	214
BfaI	CTAG	1 cut(s)	215
BfuI	GTATCC	1 cut(s)	112
BisI	GCNGC	1 cut(s)	327
BlsI	GCNGC	1 cut(s)	328
Bme1390I	CCNGG	2 cut(s)	241, 331
BmgT120I	GGNCC	1 cut(s)	392
BmiI	GGNNCC	3 cut(s)	257, 303, 410
BmrFI	CCNGG	2 cut(s)	241, 331
BmsI	GCATC	2 cut(s)	85, 276
BpmI	CTGGAG	1 cut(s)	189
BpuEI	CTTGAG	2 cut(s)	91, 144
BsaJI	CCNNGG	2 cut(s)	239, 330
BseBI	CCWGG	2 cut(s)	241, 331
BseDI	CCNNGG	2 cut(s)	239, 330
BseGI	GGATG	1 cut(s)	291
BseMII	CTCAG	2 cut(s)	300, 381
BseXI	GCAGC	1 cut(s)	338
BshFI	GGCC	1 cut(s)	393
BslFI	GGGAC	1 cut(s)	178
BsmFI	GGGAC	1 cut(s)	178
BsnI	GGCC	1 cut(s)	393
Bsp1286I	GDGCHC	1 cut(s)	240
Bsp143I	GATC	2 cut(s)	25, 250
BspANI	GGCC	1 cut(s)	393
BspCNI	CTCAG	2 cut(s)	301, 380
BspLI	GGNNCC	3 cut(s)	257, 303, 410
BspPI	GGATC	1 cut(s)	20
BssECI	CCNNGG	2 cut(s)	239, 330
BssMI	GATC	2 cut(s)	25, 250
Bst2UI	CCWGG	2 cut(s)	241, 331
Bst4CI	ACNGT	2 cut(s)	13, 350
BstDEI	CTNAG	2 cut(s)	309, 367
BstF5I	GGATG	1 cut(s)	291
BstKTI	GATC	2 cut(s)	28, 253
BstMBI	GATC	2 cut(s)	25, 250
BstNI	CCWGG	2 cut(s)	241, 331
BstSCI	CCNGG	2 cut(s)	239, 329
BstV1I	GCAGC	1 cut(s)	338
BsuI	GTATCC	1 cut(s)	112
BsuRI	GGCC	1 cut(s)	393
BtsCI	GGATG	1 cut(s)	291
BtsIMutI	CAGTG	1 cut(s)	188
Cfr13I	GGNCC	1 cut(s)	392
Csp6I	GTAC	2 cut(s)	228, 431
CviAII	CATG	1 cut(s)	405
CviJI	RGCY	7 cut(s)	238, 282, 313, 329, 336, 393, 425
CviKI_1	RGCY	7 cut(s)	238, 282, 313, 329, 336, 393, 425
CviQI	GTAC	2 cut(s)	228, 431
DdeI	CTNAG	2 cut(s)	309, 367
DpnI	GATC	2 cut(s)	27, 252
DpnII	GATC	2 cut(s)	25, 250
Eco24I	GRGCYC	1 cut(s)	240
EcoRII	CCWGG	2 cut(s)	239, 329
EcoT38I	GRGCYC	1 cut(s)	240
FaeI	CATG	1 cut(s)	408
FaiI	YATR	5 cut(s)	91, 93, 299, 344, 406
FaqI	GGGAC	1 cut(s)	178
FatI	CATG	1 cut(s)	404
Fnu4HI	GCNGC	1 cut(s)	327
FokI	GGATG	1 cut(s)	298
FriOI	GRGCYC	1 cut(s)	240
Fsp4HI	GCNGC	1 cut(s)	327
FspBI	CTAG	1 cut(s)	215
GluI	GCNGC	1 cut(s)	327
GsuI	CTGGAG	1 cut(s)	189
HaeIII	GGCC	1 cut(s)	393
Hin1II	CATG	1 cut(s)	408
HincII	GTYRAC	2 cut(s)	131, 148
HindII	GTYRAC	2 cut(s)	131, 148
HinfI	GANTC	1 cut(s)	157
HphI	GGTGA	2 cut(s)	19, 35
Hpy166II	GTNNAC	4 cut(s)	131, 148, 188, 230
Hpy188I	TCNGA	2 cut(s)	260, 370
Hpy188III	TCNNGA	4 cut(s)	78, 108, 206, 419
Hpy8I	GTNNAC	4 cut(s)	131, 148, 188, 230
HpyAV	CCTTC	1 cut(s)	378
HpyCH4III	ACNGT	2 cut(s)	13, 350
HpyCH4IV	ACGT	1 cut(s)	127
HpyCH4V	TGCA	2 cut(s)	98, 326
HpyF3I	CTNAG	2 cut(s)	309, 367
HpySE526I	ACGT	1 cut(s)	127
Hsp92II	CATG	1 cut(s)	408
Kzo9I	GATC	2 cut(s)	25, 250
LpnPI	CCDG	7 cut(s)	128, 219, 226, 253, 268, 316, 343
Lsp1109I	GCAGC	1 cut(s)	338
LweI	GCATC	2 cut(s)	85, 276
MaeI	CTAG	1 cut(s)	215
MaeII	ACGT	1 cut(s)	127
MaeIII	GTNAC	1 cut(s)	7
MalI	GATC	2 cut(s)	27, 252
MboI	GATC	2 cut(s)	25, 250
MboII	GAAGA	1 cut(s)	209
MhlI	GDGCHC	1 cut(s)	240
MluCI	AATT	4 cut(s)	111, 170, 292, 413
MlyI	GAGTC	1 cut(s)	151
MnlI	CCTC	3 cut(s)	74, 115, 376
MspR9I	CCNGG	2 cut(s)	241, 331
MvaI	CCWGG	2 cut(s)	241, 331
NdeII	GATC	2 cut(s)	25, 250
NlaIII	CATG	1 cut(s)	408
NlaIV	GGNNCC	3 cut(s)	257, 303, 410
NmuCI	GTSAC	1 cut(s)	7
PflFI	GACNNNGTC	1 cut(s)	126
PkrI	GCNGC	1 cut(s)	328
PleI	GAGTC	1 cut(s)	151
PpsI	GAGTC	1 cut(s)	151
Psp6I	CCWGG	2 cut(s)	239, 329
PspGI	CCWGG	2 cut(s)	239, 329
PspN4I	GGNNCC	3 cut(s)	257, 303, 410
PspPI	GGNCC	1 cut(s)	392
PsyI	GACNNNGTC	1 cut(s)	126
RsaI	GTAC	2 cut(s)	229, 432
RsaNI	GTAC	2 cut(s)	228, 431
SatI	GCNGC	1 cut(s)	327
Sau3AI	GATC	2 cut(s)	25, 250
Sau96I	GGNCC	1 cut(s)	392
SchI	GAGTC	1 cut(s)	151
ScrFI	CCNGG	2 cut(s)	241, 331
SduI	GDGCHC	1 cut(s)	240
SetI	ASST	6 cut(s)	130, 147, 245, 307, 315, 368
SfaNI	GCATC	2 cut(s)	85, 276
SmlI	CTYRAG	2 cut(s)	106, 159
SmoI	CTYRAG	2 cut(s)	106, 159
SpeI	ACTAGT	1 cut(s)	214
Sse9I	AATT	4 cut(s)	111, 170, 292, 413
SspMI	CTAG	1 cut(s)	215
StyD4I	CCNGG	2 cut(s)	239, 329
TaaI	ACNGT	2 cut(s)	13, 350
TaiI	ACGT	1 cut(s)	130
TaqI	TCGA	1 cut(s)	121
TasI	AATT	4 cut(s)	111, 170, 292, 413
TatI	WGTACW	1 cut(s)	430
TscAI	CASTG	1 cut(s)	195
TseFI	GTSAC	1 cut(s)	7
TseI	GCWGC	1 cut(s)	326
Tsp45I	GTSAC	1 cut(s)	7
TspDTI	ATGAA	2 cut(s)	72, 359
TspRI	CASTG	1 cut(s)	195
Tth111I	GACNNNGTC	1 cut(s)	126
XspI	CTAG	1 cut(s)	215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.