Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0029654

Physical Location & Seq

Genomic Coordinates Forward (+)

15025740 .. 15026856

Gene Structure 1117 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGGGAAAGCCACATCAAGATTTAGCTGTAACCTATCCCAAGATATTTGATGTTAGAAGCATCTTTGAAGGATCTTATGAACTTTGTATTTTAACCTCCATACTTTTTTATTTCTGTGCAATTGAAATTCCTTGTAAGTTGAAGTGGTTCGGAGAGCTAGACAATATATGTACCTCCAACTCTGATCAGGTAGACAATGATTTCCTCTTTTTTGCTGCGCAGACCTTTGACTTGGTTACTATGAAGCCAGATGAAGTCGATTTTACTGCAAGTGTTGTGTTGGAACCAAACTGCGATGGTGCAACTAGTGGCTCGAATGACTTGAAATCTGAAACAACTTGGTGTTATGGAGTTGTCTTGTGGTTTGAGACTGGTTTTACCAGCAGGTTCTGCAAGGAAAAGCCAGCTGTTTTGTCCACATCCCCATACACTCCCCAAACCCACTGGATGCAAACAATTTTGACATTCCAGGAACCAATTGCTGTGACATCAGGAGAATCTTGCATGGACAGATCAGCAGCAGTTGGCACCGAAGTATGTCCTGCTGCGCGGATTCAGTTGTGCATAAGTATTGCCCGTGCTTCTCAACATCGCAACATTGACATTTCCCTAGAAACTACTGGAATTGATCCTCATAGTCGGAAACACAGCTGGCCTGTGCAACTCTTTAATCTATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006325 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008469 GO:0008757 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0016273 GO:0016274 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018193 GO:0018195 GO:0018216 GO:0019219 GO:0019222 GO:0019538 GO:0019919 GO:0031323 GO:0031326 GO:0032259 GO:0034969 GO:0035242 GO:0035246 GO:0035247 GO:0036211 GO:0042054 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0140096 GO:1901564 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_11 Methyltransf_25 zf-C2H2_2

Protein Analysis

226

Amino Acids

25.29

Weight (kDa)

4.79

Isoelectric Point (pI)

37.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRMT_C	PF22528	74 - 169	9.3e-15	Arginine methyltransferase oligomerization subdomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029654)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0326481
rosa_multiflora	Rmu_co8333231.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	219
Acc36I	ACCTGC	1 cut(s)	375
AccB1I	GGYRCC	1 cut(s)	527
AccI	GTMKAC	1 cut(s)	192
AccII	CGCG	1 cut(s)	550
AciI	CCGC	1 cut(s)	550
AclWI	GGATC	2 cut(s)	79, 623
AcsI	RAATTY	1 cut(s)	126
AfaI	GTAC	1 cut(s)	172
AgsI	TTSAA	4 cut(s)	68, 125, 142, 325
AhlI	ACTAGT	1 cut(s)	305
AjnI	CCWGG	1 cut(s)	468
AluBI	AGCT	4 cut(s)	26, 157, 407, 651
AluI	AGCT	4 cut(s)	26, 157, 407, 651
Alw26I	GTCTC	1 cut(s)	362
AlwI	GGATC	2 cut(s)	79, 623
AlwNI	CAGNNNCTG	1 cut(s)	390
AoxI	GGCC	1 cut(s)	653
ApeKI	GCWGC	3 cut(s)	215, 518, 545
ApoI	RAATTY	1 cut(s)	126
Asp700I	GAANNNNTTC	1 cut(s)	146
AspLEI	GCGC	2 cut(s)	220, 550
BanI	GGYRCC	1 cut(s)	527
BbvI	GCAGC	3 cut(s)	202, 530, 532
BccI	CCATC	1 cut(s)	290
BcgI	CGANNNNNNTGC	2 cut(s)	248, 282
BciT130I	CCWGG	1 cut(s)	470
BclI	TGATCA	1 cut(s)	184
BcoDI	GTCTC	1 cut(s)	362
BcuI	ACTAGT	1 cut(s)	305
BfaI	CTAG	3 cut(s)	158, 306, 611
BfuAI	ACCTGC	1 cut(s)	375
BisI	GCNGC	3 cut(s)	216, 519, 546
BlsI	GCNGC	3 cut(s)	217, 520, 547
Bme1390I	CCNGG	1 cut(s)	470
BmiI	GGNNCC	3 cut(s)	285, 474, 529
BmrFI	CCNGG	1 cut(s)	470
BmsI	GCATC	2 cut(s)	69, 438
Bse1I	ACTGG	3 cut(s)	376, 449, 625
BseBI	CCWGG	1 cut(s)	470
BseGI	GGATG	2 cut(s)	419, 453
BseNI	ACTGG	3 cut(s)	376, 449, 625
BseXI	GCAGC	3 cut(s)	202, 530, 532
Bsh1236I	CGCG	1 cut(s)	550
BshFI	GGCC	1 cut(s)	655
BshNI	GGYRCC	1 cut(s)	527
BsmAI	GTCTC	1 cut(s)	362
BsnI	GGCC	1 cut(s)	655
Bsp143I	GATC	4 cut(s)	71, 184, 512, 628
BspACI	CCGC	1 cut(s)	550
BspANI	GGCC	1 cut(s)	655
BspFNI	CGCG	1 cut(s)	550
BspLI	GGNNCC	3 cut(s)	285, 474, 529
BspMI	ACCTGC	1 cut(s)	375
BspPI	GGATC	2 cut(s)	79, 623
BspT107I	GGYRCC	1 cut(s)	527
BsrI	ACTGG	3 cut(s)	376, 449, 625
BssMI	GATC	4 cut(s)	71, 184, 512, 628
Bst2UI	CCWGG	1 cut(s)	470
BstAPI	GCANNNNNTGC	1 cut(s)	390
BstC8I	GCNNGC	2 cut(s)	405, 653
BstDEI	CTNAG	1 cut(s)	678
BstF5I	GGATG	2 cut(s)	419, 453
BstFNI	CGCG	1 cut(s)	550
BstHHI	GCGC	2 cut(s)	220, 550
BstKTI	GATC	4 cut(s)	74, 187, 515, 631
BstMAI	GTCTC	1 cut(s)	362
BstMBI	GATC	4 cut(s)	71, 184, 512, 628
BstMWI	GCNNNNNNNGC	1 cut(s)	390
BstNI	CCWGG	1 cut(s)	470
BstSCI	CCNGG	1 cut(s)	468
BstUI	CGCG	1 cut(s)	550
BstV1I	GCAGC	3 cut(s)	202, 530, 532
BstX2I	RGATCY	1 cut(s)	71
BstYI	RGATCY	1 cut(s)	71
BsuRI	GGCC	1 cut(s)	655
BtgZI	GCGATG	2 cut(s)	309, 575
BtsCI	GGATG	2 cut(s)	419, 453
BtsIMutI	CAGTG	1 cut(s)	442
BveI	ACCTGC	1 cut(s)	375
Cac8I	GCNNGC	2 cut(s)	405, 653
CaiI	CAGNNNCTG	1 cut(s)	390
CfoI	GCGC	2 cut(s)	220, 550
Csp6I	GTAC	1 cut(s)	171
CviAII	CATG	1 cut(s)	505
CviJI	RGCY	9 cut(s)	10, 26, 157, 247, 312, 403, 407, 651, 655
CviKI_1	RGCY	9 cut(s)	10, 26, 157, 247, 312, 403, 407, 651, 655
CviQI	GTAC	1 cut(s)	171
DdeI	CTNAG	1 cut(s)	678
DpnI	GATC	4 cut(s)	73, 186, 514, 630
DpnII	GATC	4 cut(s)	71, 184, 512, 628
EcoRII	CCWGG	1 cut(s)	468
FaeI	CATG	1 cut(s)	508
FatI	CATG	1 cut(s)	504
FbaI	TGATCA	1 cut(s)	184
FblI	GTMKAC	1 cut(s)	192
Fnu4HI	GCNGC	3 cut(s)	216, 519, 546
FokI	GGATG	2 cut(s)	406, 460
Fsp4HI	GCNGC	3 cut(s)	216, 519, 546
FspBI	CTAG	3 cut(s)	158, 306, 611
FspI	TGCGCA	1 cut(s)	219
GlaI	GCGC	2 cut(s)	219, 549
GluI	GCNGC	3 cut(s)	216, 519, 546
HaeIII	GGCC	1 cut(s)	655
HhaI	GCGC	2 cut(s)	220, 550
Hin1II	CATG	1 cut(s)	508
Hin6I	GCGC	2 cut(s)	218, 548
HinP1I	GCGC	2 cut(s)	218, 548
HinfI	GANTC	2 cut(s)	497, 553
Hpy166II	GTNNAC	2 cut(s)	193, 417
Hpy188I	TCNGA	4 cut(s)	152, 184, 331, 642
Hpy188III	TCNNGA	2 cut(s)	17, 492
Hpy8I	GTNNAC	2 cut(s)	193, 417
HpyAV	CCTTC	1 cut(s)	62
HpyCH4V	TGCA	8 cut(s)	119, 269, 302, 393, 451, 504, 564, 661
HpyF10VI	GCNNNNNNNGC	1 cut(s)	390
HpyF3I	CTNAG	1 cut(s)	678
Hsp92II	CATG	1 cut(s)	508
HspAI	GCGC	2 cut(s)	218, 548
Ksp22I	TGATCA	1 cut(s)	184
Kzo9I	GATC	4 cut(s)	71, 184, 512, 628
Lsp1109I	GCAGC	3 cut(s)	202, 530, 532
LweI	GCATC	2 cut(s)	69, 438
MaeI	CTAG	3 cut(s)	158, 306, 611
MaeIII	GTNAC	3 cut(s)	28, 235, 484
MalI	GATC	4 cut(s)	73, 186, 514, 630
MboI	GATC	4 cut(s)	71, 184, 512, 628
MfeI	CAATTG	2 cut(s)	120, 477
MflI	RGATCY	1 cut(s)	71
MluCI	AATT	5 cut(s)	120, 126, 456, 477, 624
MmeI	TCCRAC	3 cut(s)	201, 261, 620
MnlI	CCTC	4 cut(s)	106, 184, 215, 642
MroXI	GAANNNNTTC	1 cut(s)	146
MseI	TTAA	2 cut(s)	92, 669
MspA1I	CMGCKG	2 cut(s)	407, 651
MspR9I	CCNGG	1 cut(s)	470
MunI	CAATTG	2 cut(s)	120, 477
MvaI	CCWGG	1 cut(s)	470
MvnI	CGCG	1 cut(s)	550
MwoI	GCNNNNNNNGC	1 cut(s)	390
NdeII	GATC	4 cut(s)	71, 184, 512, 628
NlaIII	CATG	1 cut(s)	508
NlaIV	GGNNCC	3 cut(s)	285, 474, 529
NmuCI	GTSAC	1 cut(s)	484
NsbI	TGCGCA	1 cut(s)	219
PdmI	GAANNNNTTC	1 cut(s)	146
PfeI	GAWTC	2 cut(s)	497, 553
PfoI	TCCNGGA	1 cut(s)	468
PkrI	GCNGC	3 cut(s)	217, 520, 547
Psp6I	CCWGG	1 cut(s)	468
PspGI	CCWGG	1 cut(s)	468
PspN4I	GGNNCC	3 cut(s)	285, 474, 529
PstNI	CAGNNNCTG	1 cut(s)	390
PsuI	RGATCY	1 cut(s)	71
PvuII	CAGCTG	2 cut(s)	407, 651
RsaI	GTAC	1 cut(s)	172
RsaNI	GTAC	1 cut(s)	171
SaqAI	TTAA	2 cut(s)	92, 669
SatI	GCNGC	3 cut(s)	216, 519, 546
Sau3AI	GATC	4 cut(s)	71, 184, 512, 628
ScrFI	CCNGG	1 cut(s)	470
SfaNI	GCATC	2 cut(s)	69, 438
SpeI	ACTAGT	1 cut(s)	305
Sse9I	AATT	5 cut(s)	120, 126, 456, 477, 624
SsiI	CCGC	1 cut(s)	550
SspMI	CTAG	3 cut(s)	158, 306, 611
StyD4I	CCNGG	1 cut(s)	468
TaqI	TCGA	2 cut(s)	258, 314
TasI	AATT	5 cut(s)	120, 126, 456, 477, 624
TfiI	GAWTC	2 cut(s)	497, 553
Tru1I	TTAA	2 cut(s)	92, 669
Tru9I	TTAA	2 cut(s)	92, 669
TscAI	CASTG	1 cut(s)	449
TseFI	GTSAC	1 cut(s)	484
TseI	GCWGC	3 cut(s)	215, 518, 545
Tsp45I	GTSAC	1 cut(s)	484
TspDTI	ATGAA	3 cut(s)	93, 257, 267
TspRI	CASTG	1 cut(s)	449
XapI	RAATTY	1 cut(s)	126
XmiI	GTMKAC	1 cut(s)	192
XmnI	GAANNNNTTC	1 cut(s)	146
XspI	CTAG	3 cut(s)	158, 306, 611

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.