Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0029654

Physical Location & Seq

Genomic Coordinates Forward (+)

15025740 .. 15026856

Gene Structure 1117 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ55611

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGGGAAAGCCACATCAAGATTTAGCTGTAACCTATCCCAAGATATTTGATGTTAGAAGCATCTTTGAAGGATCTTATGAACTTTGTATTTTAACCTCCATACTTTTTTATTTCTGTGCAATTGAAATTCCTTGTAAGTTGAAGTGGTTCGGAGAGCTAGACAATATATGTACCTCCAACTCTGATCAGGTAGACAATGATTTCCTCTTTTTTGCTGCGCAGACCTTTGACTTGGTTACTATGAAGCCAGATGAAGTCGATTTTACTGCAAGTGTTGTGTTGGAACCAAACTGCGATGGTGCAACTAGTGGCTCGAATGACTTGAAATCTGAAACAACTTGGTGTTATGGAGTTGTCTTGTGGTTTGAGACTGGTTTTACCAGCAGGTTCTGCAAGGAAAAGCCAGCTGTTTTGTCCACATCCCCATACACTCCCCAAACCCACTGGATGCAAACAATTTTGACATTCCAGGAACCAATTGCTGTGACATCAGGAGAATCTTGCATGGACAGATCAGCAGCAGTTGGCACCGAAGTATGTCCTGCTGCGCGGATTCAGTTGTGCATAAGTATTGCCCGTGCTTCTCAACATCGCAACATTGACATTTCCCTAGAAACTACTGGAATTGATCCTCATAGTCGGAAACACAGCTGGCCTGTGCAACTCTTTAATCTATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006325 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008469 GO:0008757 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0016273 GO:0016274 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018193 GO:0018195 GO:0018216 GO:0019219 GO:0019222 GO:0019538 GO:0019919 GO:0031323 GO:0031326 GO:0032259 GO:0034969 GO:0035242 GO:0035246 GO:0035247 GO:0036211 GO:0042054 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0140096 GO:1901564 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_11 Methyltransf_25 zf-C2H2_2

Protein Analysis

226

Amino Acids

25.29

Weight (kDa)

4.79

Isoelectric Point (pI)

37.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRMT_C	PF22528	74 - 169	9.3e-15	Arginine methyltransferase oligomerization subdomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029654)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0326481
rosa_multiflora	Rmu_co8333231.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	219
Acc36I	ACCTGC	1 cut(s)	375
AccB1I	GGYRCC	1 cut(s)	527
AccI	GTMKAC	1 cut(s)	192
AccII	CGCG	1 cut(s)	550
AciI	CCGC	1 cut(s)	550
AclWI	GGATC	2 cut(s)	79, 623
AcsI	RAATTY	1 cut(s)	126
AfaI	GTAC	1 cut(s)	172
AgsI	TTSAA	4 cut(s)	68, 125, 142, 325
AhlI	ACTAGT	1 cut(s)	305
AjnI	CCWGG	1 cut(s)	468
AluBI	AGCT	4 cut(s)	26, 157, 407, 651
AluI	AGCT	4 cut(s)	26, 157, 407, 651
Alw26I	GTCTC	1 cut(s)	362
AlwI	GGATC	2 cut(s)	79, 623
AlwNI	CAGNNNCTG	1 cut(s)	390
AoxI	GGCC	1 cut(s)	653
ApeKI	GCWGC	3 cut(s)	215, 518, 545
ApoI	RAATTY	1 cut(s)	126
Asp700I	GAANNNNTTC	1 cut(s)	146
AspLEI	GCGC	2 cut(s)	220, 550
BanI	GGYRCC	1 cut(s)	527
BbvI	GCAGC	3 cut(s)	202, 530, 532
BccI	CCATC	1 cut(s)	290
BcgI	CGANNNNNNTGC	2 cut(s)	248, 282
BciT130I	CCWGG	1 cut(s)	470
BclI	TGATCA	1 cut(s)	184
BcoDI	GTCTC	1 cut(s)	362
BcuI	ACTAGT	1 cut(s)	305
BfaI	CTAG	3 cut(s)	158, 306, 611
BfuAI	ACCTGC	1 cut(s)	375
BisI	GCNGC	3 cut(s)	216, 519, 546
BlsI	GCNGC	3 cut(s)	217, 520, 547
Bme1390I	CCNGG	1 cut(s)	470
BmiI	GGNNCC	3 cut(s)	285, 474, 529
BmrFI	CCNGG	1 cut(s)	470
BmsI	GCATC	2 cut(s)	69, 438
Bse1I	ACTGG	3 cut(s)	376, 449, 625
BseBI	CCWGG	1 cut(s)	470
BseGI	GGATG	2 cut(s)	419, 453
BseNI	ACTGG	3 cut(s)	376, 449, 625
BseXI	GCAGC	3 cut(s)	202, 530, 532
Bsh1236I	CGCG	1 cut(s)	550
BshFI	GGCC	1 cut(s)	655
BshNI	GGYRCC	1 cut(s)	527
BsmAI	GTCTC	1 cut(s)	362
BsnI	GGCC	1 cut(s)	655
Bsp143I	GATC	4 cut(s)	71, 184, 512, 628
BspACI	CCGC	1 cut(s)	550
BspANI	GGCC	1 cut(s)	655
BspFNI	CGCG	1 cut(s)	550
BspLI	GGNNCC	3 cut(s)	285, 474, 529
BspMI	ACCTGC	1 cut(s)	375
BspPI	GGATC	2 cut(s)	79, 623
BspT107I	GGYRCC	1 cut(s)	527
BsrI	ACTGG	3 cut(s)	376, 449, 625
BssMI	GATC	4 cut(s)	71, 184, 512, 628
Bst2UI	CCWGG	1 cut(s)	470
BstAPI	GCANNNNNTGC	1 cut(s)	390
BstC8I	GCNNGC	2 cut(s)	405, 653
BstDEI	CTNAG	1 cut(s)	678
BstF5I	GGATG	2 cut(s)	419, 453
BstFNI	CGCG	1 cut(s)	550
BstHHI	GCGC	2 cut(s)	220, 550
BstKTI	GATC	4 cut(s)	74, 187, 515, 631
BstMAI	GTCTC	1 cut(s)	362
BstMBI	GATC	4 cut(s)	71, 184, 512, 628
BstMWI	GCNNNNNNNGC	1 cut(s)	390
BstNI	CCWGG	1 cut(s)	470
BstSCI	CCNGG	1 cut(s)	468
BstUI	CGCG	1 cut(s)	550
BstV1I	GCAGC	3 cut(s)	202, 530, 532
BstX2I	RGATCY	1 cut(s)	71
BstYI	RGATCY	1 cut(s)	71
BsuRI	GGCC	1 cut(s)	655
BtgZI	GCGATG	2 cut(s)	309, 575
BtsCI	GGATG	2 cut(s)	419, 453
BtsIMutI	CAGTG	1 cut(s)	442
BveI	ACCTGC	1 cut(s)	375
Cac8I	GCNNGC	2 cut(s)	405, 653
CaiI	CAGNNNCTG	1 cut(s)	390
CfoI	GCGC	2 cut(s)	220, 550
Csp6I	GTAC	1 cut(s)	171
CviAII	CATG	1 cut(s)	505
CviJI	RGCY	9 cut(s)	10, 26, 157, 247, 312, 403, 407, 651, 655
CviKI_1	RGCY	9 cut(s)	10, 26, 157, 247, 312, 403, 407, 651, 655
CviQI	GTAC	1 cut(s)	171
DdeI	CTNAG	1 cut(s)	678
DpnI	GATC	4 cut(s)	73, 186, 514, 630
DpnII	GATC	4 cut(s)	71, 184, 512, 628
EcoRII	CCWGG	1 cut(s)	468
FaeI	CATG	1 cut(s)	508
FatI	CATG	1 cut(s)	504
FbaI	TGATCA	1 cut(s)	184
FblI	GTMKAC	1 cut(s)	192
Fnu4HI	GCNGC	3 cut(s)	216, 519, 546
FokI	GGATG	2 cut(s)	406, 460
Fsp4HI	GCNGC	3 cut(s)	216, 519, 546
FspBI	CTAG	3 cut(s)	158, 306, 611
FspI	TGCGCA	1 cut(s)	219
GlaI	GCGC	2 cut(s)	219, 549
GluI	GCNGC	3 cut(s)	216, 519, 546
HaeIII	GGCC	1 cut(s)	655
HhaI	GCGC	2 cut(s)	220, 550
Hin1II	CATG	1 cut(s)	508
Hin6I	GCGC	2 cut(s)	218, 548
HinP1I	GCGC	2 cut(s)	218, 548
HinfI	GANTC	2 cut(s)	497, 553
Hpy166II	GTNNAC	2 cut(s)	193, 417
Hpy188I	TCNGA	4 cut(s)	152, 184, 331, 642
Hpy188III	TCNNGA	2 cut(s)	17, 492
Hpy8I	GTNNAC	2 cut(s)	193, 417
HpyAV	CCTTC	1 cut(s)	62
HpyCH4V	TGCA	8 cut(s)	119, 269, 302, 393, 451, 504, 564, 661
HpyF10VI	GCNNNNNNNGC	1 cut(s)	390
HpyF3I	CTNAG	1 cut(s)	678
Hsp92II	CATG	1 cut(s)	508
HspAI	GCGC	2 cut(s)	218, 548
Ksp22I	TGATCA	1 cut(s)	184
Kzo9I	GATC	4 cut(s)	71, 184, 512, 628
Lsp1109I	GCAGC	3 cut(s)	202, 530, 532
LweI	GCATC	2 cut(s)	69, 438
MaeI	CTAG	3 cut(s)	158, 306, 611
MaeIII	GTNAC	3 cut(s)	28, 235, 484
MalI	GATC	4 cut(s)	73, 186, 514, 630
MboI	GATC	4 cut(s)	71, 184, 512, 628
MfeI	CAATTG	2 cut(s)	120, 477
MflI	RGATCY	1 cut(s)	71
MluCI	AATT	5 cut(s)	120, 126, 456, 477, 624
MmeI	TCCRAC	3 cut(s)	201, 261, 620
MnlI	CCTC	4 cut(s)	106, 184, 215, 642
MroXI	GAANNNNTTC	1 cut(s)	146
MseI	TTAA	2 cut(s)	92, 669
MspA1I	CMGCKG	2 cut(s)	407, 651
MspR9I	CCNGG	1 cut(s)	470
MunI	CAATTG	2 cut(s)	120, 477
MvaI	CCWGG	1 cut(s)	470
MvnI	CGCG	1 cut(s)	550
MwoI	GCNNNNNNNGC	1 cut(s)	390
NdeII	GATC	4 cut(s)	71, 184, 512, 628
NlaIII	CATG	1 cut(s)	508
NlaIV	GGNNCC	3 cut(s)	285, 474, 529
NmuCI	GTSAC	1 cut(s)	484
NsbI	TGCGCA	1 cut(s)	219
PdmI	GAANNNNTTC	1 cut(s)	146
PfeI	GAWTC	2 cut(s)	497, 553
PfoI	TCCNGGA	1 cut(s)	468
PkrI	GCNGC	3 cut(s)	217, 520, 547
Psp6I	CCWGG	1 cut(s)	468
PspGI	CCWGG	1 cut(s)	468
PspN4I	GGNNCC	3 cut(s)	285, 474, 529
PstNI	CAGNNNCTG	1 cut(s)	390
PsuI	RGATCY	1 cut(s)	71
PvuII	CAGCTG	2 cut(s)	407, 651
RsaI	GTAC	1 cut(s)	172
RsaNI	GTAC	1 cut(s)	171
SaqAI	TTAA	2 cut(s)	92, 669
SatI	GCNGC	3 cut(s)	216, 519, 546
Sau3AI	GATC	4 cut(s)	71, 184, 512, 628
ScrFI	CCNGG	1 cut(s)	470
SfaNI	GCATC	2 cut(s)	69, 438
SpeI	ACTAGT	1 cut(s)	305
Sse9I	AATT	5 cut(s)	120, 126, 456, 477, 624
SsiI	CCGC	1 cut(s)	550
SspMI	CTAG	3 cut(s)	158, 306, 611
StyD4I	CCNGG	1 cut(s)	468
TaqI	TCGA	2 cut(s)	258, 314
TasI	AATT	5 cut(s)	120, 126, 456, 477, 624
TfiI	GAWTC	2 cut(s)	497, 553
Tru1I	TTAA	2 cut(s)	92, 669
Tru9I	TTAA	2 cut(s)	92, 669
TscAI	CASTG	1 cut(s)	449
TseFI	GTSAC	1 cut(s)	484
TseI	GCWGC	3 cut(s)	215, 518, 545
Tsp45I	GTSAC	1 cut(s)	484
TspDTI	ATGAA	3 cut(s)	93, 257, 267
TspRI	CASTG	1 cut(s)	449
XapI	RAATTY	1 cut(s)	126
XmiI	GTMKAC	1 cut(s)	192
XmnI	GAANNNNTTC	1 cut(s)	146
XspI	CTAG	3 cut(s)	158, 306, 611

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.