Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8333231.1

Orthogroup ID

OG0029654

Physical Location & Seq

Genomic Coordinates Forward (+)

9 .. 449

Gene Structure 441 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8333231.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

atgaagccagatgaagtcgattttactgcaagtgttgtgttggaaccaaactgtgatggtgcaactagtggctcaaatgacttgaaatctgaaacaacttggtgttacggaattgtcttgtggtttgagactggttttaccagcaggttctgcaaggaaaagccagctgttttgtccacgtccccatatactcctcagacacactggatgcaaacaattttgacattccaggaaccaattgctgtgacatcaggaaaatcttgggtggacagatcagcagcagttggcactgaagtatgtcctgctgcgagtattcagttgcgtataagtattgcccgtgcttctcaacatcgtaacattgacatttccctagaaactactgtaattgatcctcatggtcgaaaacacagctggcctttgcaactctttaatctatcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006325 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008469 GO:0008757 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0016273 GO:0016274 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018193 GO:0018195 GO:0018216 GO:0019219 GO:0019222 GO:0019538 GO:0019919 GO:0031323 GO:0031326 GO:0032259 GO:0034969 GO:0035242 GO:0035246 GO:0035247 GO:0036211 GO:0042054 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0140096 GO:1901564 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_11 Methyltransf_25 zf-C2H2_2

Protein Analysis

146

Amino Acids

16.19

Weight (kDa)

5.75

Isoelectric Point (pI)

30.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029654)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0326481
rosa_multiflora	Rmu_co8333231.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	135
AclWI	GGATC	1 cut(s)	383
AcuI	CTGAAG	1 cut(s)	312
AgsI	TTSAA	1 cut(s)	85
AhlI	ACTAGT	1 cut(s)	65
AjiI	CACGTC	1 cut(s)	180
AjnI	CCWGG	1 cut(s)	228
AluBI	AGCT	2 cut(s)	167, 411
AluI	AGCT	2 cut(s)	167, 411
Alw26I	GTCTC	1 cut(s)	122
AlwI	GGATC	1 cut(s)	383
AlwNI	CAGNNNCTG	1 cut(s)	150
AoxI	GGCC	1 cut(s)	413
ApeKI	GCWGC	2 cut(s)	278, 305
BbvI	GCAGC	2 cut(s)	290, 292
BccI	CCATC	1 cut(s)	50
BcgI	CGANNNNNNTGC	2 cut(s)	8, 42
BciT130I	CCWGG	1 cut(s)	230
BcoDI	GTCTC	1 cut(s)	122
BcuI	ACTAGT	1 cut(s)	65
BfaI	CTAG	2 cut(s)	66, 371
BfuAI	ACCTGC	1 cut(s)	135
BisI	GCNGC	2 cut(s)	279, 306
BlsI	GCNGC	2 cut(s)	280, 307
Bme1390I	CCNGG	1 cut(s)	230
BmgBI	CACGTC	1 cut(s)	180
BmiI	GGNNCC	2 cut(s)	45, 234
BmrFI	CCNGG	1 cut(s)	230
BmsI	GCATC	1 cut(s)	198
Bse1I	ACTGG	2 cut(s)	136, 209
BseBI	CCWGG	1 cut(s)	230
BseGI	GGATG	1 cut(s)	213
BseMII	CTCAG	1 cut(s)	209
BseNI	ACTGG	2 cut(s)	136, 209
BseRI	GAGGAG	1 cut(s)	183
BseXI	GCAGC	2 cut(s)	290, 292
BshFI	GGCC	1 cut(s)	415
BslFI	GGGAC	1 cut(s)	166
BsmAI	GTCTC	1 cut(s)	122
BsmFI	GGGAC	1 cut(s)	166
BsnI	GGCC	1 cut(s)	415
Bsp143I	GATC	2 cut(s)	272, 388
BspANI	GGCC	1 cut(s)	415
BspCNI	CTCAG	1 cut(s)	208
BspLI	GGNNCC	2 cut(s)	45, 234
BspMI	ACCTGC	1 cut(s)	135
BspPI	GGATC	1 cut(s)	383
BsrI	ACTGG	2 cut(s)	136, 209
BssMI	GATC	2 cut(s)	272, 388
Bst2UI	CCWGG	1 cut(s)	230
Bst4CI	ACNGT	2 cut(s)	53, 382
BstAPI	GCANNNNNTGC	1 cut(s)	150
BstC8I	GCNNGC	2 cut(s)	165, 413
BstDEI	CTNAG	2 cut(s)	195, 438
BstF5I	GGATG	1 cut(s)	213
BstKTI	GATC	2 cut(s)	275, 391
BstMAI	GTCTC	1 cut(s)	122
BstMBI	GATC	2 cut(s)	272, 388
BstMWI	GCNNNNNNNGC	1 cut(s)	150
BstNI	CCWGG	1 cut(s)	230
BstSCI	CCNGG	1 cut(s)	228
BstV1I	GCAGC	2 cut(s)	290, 292
BsuRI	GGCC	1 cut(s)	415
BtrI	CACGTC	1 cut(s)	180
BtsCI	GGATG	1 cut(s)	213
BtsIMutI	CAGTG	2 cut(s)	202, 288
BveI	ACCTGC	1 cut(s)	135
Cac8I	GCNNGC	2 cut(s)	165, 413
CaiI	CAGNNNCTG	1 cut(s)	150
CviAII	CATG	1 cut(s)	395
CviJI	RGCY	6 cut(s)	7, 72, 163, 167, 411, 415
CviKI_1	RGCY	6 cut(s)	7, 72, 163, 167, 411, 415
DdeI	CTNAG	2 cut(s)	195, 438
DpnI	GATC	2 cut(s)	274, 390
DpnII	GATC	2 cut(s)	272, 388
Eco57I	CTGAAG	1 cut(s)	312
EcoRII	CCWGG	1 cut(s)	228
FaeI	CATG	1 cut(s)	398
FaiI	YATR	5 cut(s)	187, 189, 298, 326, 396
FaqI	GGGAC	1 cut(s)	166
FatI	CATG	1 cut(s)	394
Fnu4HI	GCNGC	2 cut(s)	279, 306
FokI	GGATG	1 cut(s)	220
Fsp4HI	GCNGC	2 cut(s)	279, 306
FspBI	CTAG	2 cut(s)	66, 371
GluI	GCNGC	2 cut(s)	279, 306
HaeIII	GGCC	1 cut(s)	415
Hin1II	CATG	1 cut(s)	398
Hpy166II	GTNNAC	2 cut(s)	177, 268
Hpy188I	TCNGA	2 cut(s)	91, 198
Hpy188III	TCNNGA	1 cut(s)	252
Hpy8I	GTNNAC	2 cut(s)	177, 268
HpyCH4III	ACNGT	2 cut(s)	53, 382
HpyCH4IV	ACGT	1 cut(s)	179
HpyCH4V	TGCA	5 cut(s)	29, 62, 153, 211, 421
HpyF10VI	GCNNNNNNNGC	1 cut(s)	150
HpyF3I	CTNAG	2 cut(s)	195, 438
HpySE526I	ACGT	1 cut(s)	179
Hsp92II	CATG	1 cut(s)	398
Kzo9I	GATC	2 cut(s)	272, 388
Lsp1109I	GCAGC	2 cut(s)	290, 292
LweI	GCATC	1 cut(s)	198
MaeI	CTAG	2 cut(s)	66, 371
MaeII	ACGT	1 cut(s)	179
MaeIII	GTNAC	3 cut(s)	104, 244, 353
MalI	GATC	2 cut(s)	274, 390
MboI	GATC	2 cut(s)	272, 388
MfeI	CAATTG	1 cut(s)	237
MluCI	AATT	4 cut(s)	111, 216, 237, 384
MmeI	TCCRAC	1 cut(s)	21
MnlI	CCTC	2 cut(s)	204, 402
MseI	TTAA	1 cut(s)	429
MspA1I	CMGCKG	2 cut(s)	167, 411
MspR9I	CCNGG	1 cut(s)	230
MunI	CAATTG	1 cut(s)	237
MvaI	CCWGG	1 cut(s)	230
MwoI	GCNNNNNNNGC	1 cut(s)	150
NdeII	GATC	2 cut(s)	272, 388
NlaIII	CATG	1 cut(s)	398
NlaIV	GGNNCC	2 cut(s)	45, 234
NmuCI	GTSAC	1 cut(s)	244
PfoI	TCCNGGA	1 cut(s)	228
PkrI	GCNGC	2 cut(s)	280, 307
Psp6I	CCWGG	1 cut(s)	228
PspGI	CCWGG	1 cut(s)	228
PspN4I	GGNNCC	2 cut(s)	45, 234
PstNI	CAGNNNCTG	1 cut(s)	150
PvuII	CAGCTG	2 cut(s)	167, 411
SaqAI	TTAA	1 cut(s)	429
SatI	GCNGC	2 cut(s)	279, 306
Sau3AI	GATC	2 cut(s)	272, 388
ScrFI	CCNGG	1 cut(s)	230
SetI	ASST	4 cut(s)	149, 169, 182, 413
SfaNI	GCATC	1 cut(s)	198
SpeI	ACTAGT	1 cut(s)	65
Sse9I	AATT	4 cut(s)	111, 216, 237, 384
SspMI	CTAG	2 cut(s)	66, 371
StyD4I	CCNGG	1 cut(s)	228
TaaI	ACNGT	2 cut(s)	53, 382
TaiI	ACGT	1 cut(s)	182
TaqI	TCGA	2 cut(s)	18, 400
TasI	AATT	4 cut(s)	111, 216, 237, 384
Tru1I	TTAA	1 cut(s)	429
Tru9I	TTAA	1 cut(s)	429
TscAI	CASTG	2 cut(s)	209, 295
TseFI	GTSAC	1 cut(s)	244
TseI	GCWGC	2 cut(s)	278, 305
Tsp45I	GTSAC	1 cut(s)	244
TspDTI	ATGAA	2 cut(s)	17, 27
TspGWI	ACGGA	1 cut(s)	123
TspRI	CASTG	2 cut(s)	209, 295
XspI	CTAG	2 cut(s)	66, 371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.