RchiOBHm_Chr1g0329791

Cysteine desulfurase 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0024792
Physical Location & Seq
Reverse (-)
19545462 .. 19546092
631 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 357 bp
ATGCAATATGAATTGGCGAGAAAGAAGATTTCAGAATTTATCAATGCATCAGATGCTCGAGAAATTGTTTTTACTAGGAATGCTACTGAAGCTATCAATCTGGTTGCGCACTCGTGGGGACTCCAAAATATAAAATCAAATGATGAGATCTTACTCACAGTTGCCGAACATCACAATGCGATTGTTCCCTGGCAACTTGTAGCTCAAAAGACCGGTGCCATTTTGAAATTCGTGGACCTAAATGAAGATAGAGTTCCAGATGTGGAAAAGTTAAAAGATATGCTTTCAAGAAAGACAAAATTTGTAGTTGTTCATCATGTCTCAAATGTGCTAGGTCTGGATCTATTTCTCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00450 ko01100 map00450 map01100
Pfam Domains
Protein Families
Aminotran_5

Protein Analysis

118

Amino Acids

13.45

Weight (kDa)

6.97

Isoelectric Point (pI)

21.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_5 PF00266 2 - 113 3.1e-35 Aminotransferase class-V
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024792)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0329791
rosa_samantha Rh1AG092300 Rh1CG096900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 108
AccB1I GGYRCC 1 cut(s) 215
AclWI GGATC 1 cut(s) 348
AcsI RAATTY 3 cut(s) 35, 227, 299
AcuI CTGAAG 1 cut(s) 108
AgeI ACCGGT 1 cut(s) 212
AgsI TTSAA 2 cut(s) 226, 288
AjnI CCWGG 1 cut(s) 188
AluBI AGCT 2 cut(s) 92, 203
AluI AGCT 2 cut(s) 92, 203
Alw26I GTCTC 1 cut(s) 325
AlwI GGATC 1 cut(s) 348
Ama87I CYCGRG 1 cut(s) 57
ApoI RAATTY 3 cut(s) 35, 227, 299
AsiGI ACCGGT 1 cut(s) 212
AspLEI GCGC 1 cut(s) 109
AspS9I GGNCC 1 cut(s) 235
AvaI CYCGRG 1 cut(s) 57
AvaII GGWCC 1 cut(s) 235
BanI GGYRCC 1 cut(s) 215
BauI CACGAG 1 cut(s) 112
BciT130I CCWGG 1 cut(s) 190
BcoDI GTCTC 1 cut(s) 325
BfaI CTAG 2 cut(s) 75, 332
BglII AGATCT 1 cut(s) 147
Bme1390I CCNGG 1 cut(s) 190
Bme18I GGWCC 1 cut(s) 235
BmeT110I CYCGRG 1 cut(s) 57
BmgT120I GGNCC 1 cut(s) 235
BmiI GGNNCC 1 cut(s) 217
BmrFI CCNGG 1 cut(s) 190
BmsI GCATC 2 cut(s) 43, 56
BpuEI CTTGAG 1 cut(s) 335
BsaJI CCNNGG 1 cut(s) 188
BsaWI WCCGGW 1 cut(s) 212
Bse118I RCCGGY 1 cut(s) 212
BseBI CCWGG 1 cut(s) 190
BseDI CCNNGG 1 cut(s) 188
BshNI GGYRCC 1 cut(s) 215
BshTI ACCGGT 1 cut(s) 212
BsiHKCI CYCGRG 1 cut(s) 57
BsiSI CCGG 1 cut(s) 213
BslFI GGGAC 1 cut(s) 132
BsmAI GTCTC 1 cut(s) 325
BsmFI GGGAC 1 cut(s) 132
BsmI GAATGC 1 cut(s) 85
BsoBI CYCGRG 1 cut(s) 57
Bsp143I GATC 2 cut(s) 147, 340
BspLI GGNNCC 1 cut(s) 217
BspPI GGATC 1 cut(s) 348
BspT107I GGYRCC 1 cut(s) 215
BsrFI RCCGGY 1 cut(s) 212
BssAI RCCGGY 1 cut(s) 212
BssECI CCNNGG 1 cut(s) 188
BssMI GATC 2 cut(s) 147, 340
BssSI CACGAG 1 cut(s) 112
Bst2BI CACGAG 1 cut(s) 112
Bst2UI CCWGG 1 cut(s) 190
Bst4CI ACNGT 1 cut(s) 160
BstAPI GCANNNNNTGC 1 cut(s) 53
BstHHI GCGC 1 cut(s) 109
BstKTI GATC 2 cut(s) 150, 343
BstMAI GTCTC 1 cut(s) 325
BstMBI GATC 2 cut(s) 147, 340
BstMWI GCNNNNNNNGC 2 cut(s) 53, 89
BstNI CCWGG 1 cut(s) 190
BstSCI CCNGG 1 cut(s) 188
BstX2I RGATCY 2 cut(s) 147, 340
BstYI RGATCY 2 cut(s) 147, 340
CfoI GCGC 1 cut(s) 109
Cfr10I RCCGGY 1 cut(s) 212
Cfr13I GGNCC 1 cut(s) 235
CspAI ACCGGT 1 cut(s) 212
CviAII CATG 1 cut(s) 317
CviJI RGCY 2 cut(s) 92, 203
CviKI_1 RGCY 2 cut(s) 92, 203
DpnI GATC 2 cut(s) 149, 342
DpnII GATC 2 cut(s) 147, 340
Eco47I GGWCC 1 cut(s) 235
Eco57I CTGAAG 1 cut(s) 108
Eco88I CYCGRG 1 cut(s) 57
EcoRII CCWGG 1 cut(s) 188
EcoT22I ATGCAT 1 cut(s) 49
FaeI CATG 1 cut(s) 320
FaiI YATR 4 cut(s) 9, 131, 281, 318
FalI AAGNNNNNCTT 2 cut(s) 267, 299
FaqI GGGAC 1 cut(s) 132
FatI CATG 1 cut(s) 316
FspBI CTAG 2 cut(s) 75, 332
FspI TGCGCA 1 cut(s) 108
GlaI GCGC 1 cut(s) 108
HapII CCGG 1 cut(s) 213
HhaI GCGC 1 cut(s) 109
Hin1II CATG 1 cut(s) 320
Hin6I GCGC 1 cut(s) 107
HinP1I GCGC 1 cut(s) 107
HinfI GANTC 1 cut(s) 120
HpaII CCGG 1 cut(s) 213
Hpy166II GTNNAC 1 cut(s) 235
Hpy188I TCNGA 2 cut(s) 34, 52
Hpy188III TCNNGA 4 cut(s) 59, 257, 288, 338
Hpy8I GTNNAC 1 cut(s) 235
HpyCH4III ACNGT 1 cut(s) 160
HpyCH4V TGCA 2 cut(s) 4, 47
HpyF10VI GCNNNNNNNGC 2 cut(s) 53, 89
Hsp92II CATG 1 cut(s) 320
HspAI GCGC 1 cut(s) 107
Kzo9I GATC 2 cut(s) 147, 340
LpnPI CCDG 6 cut(s) 86, 175, 202, 226, 270, 323
LweI GCATC 2 cut(s) 43, 56
MaeI CTAG 2 cut(s) 75, 332
MalI GATC 2 cut(s) 149, 342
MboI GATC 2 cut(s) 147, 340
MboII GAAGA 2 cut(s) 37, 257
MflI RGATCY 2 cut(s) 147, 340
MluCI AATT 5 cut(s) 11, 35, 63, 227, 299
MlyI GAGTC 1 cut(s) 114
Mph1103I ATGCAT 1 cut(s) 49
MseI TTAA 1 cut(s) 272
MslI CAYNNNNRTG 1 cut(s) 174
MspI CCGG 1 cut(s) 213
MspR9I CCNGG 1 cut(s) 190
Mva1269I GAATGC 1 cut(s) 85
MvaI CCWGG 1 cut(s) 190
MwoI GCNNNNNNNGC 2 cut(s) 53, 89
NdeII GATC 2 cut(s) 147, 340
NlaIII CATG 1 cut(s) 320
NlaIV GGNNCC 1 cut(s) 217
NsbI TGCGCA 1 cut(s) 108
NsiI ATGCAT 1 cut(s) 49
PaeR7I CTCGAG 1 cut(s) 57
PctI GAATGC 1 cut(s) 85
PinAI ACCGGT 1 cut(s) 212
PleI GAGTC 1 cut(s) 114
PpsI GAGTC 1 cut(s) 114
Psp6I CCWGG 1 cut(s) 188
PspGI CCWGG 1 cut(s) 188
PspN4I GGNNCC 1 cut(s) 217
PspPI GGNCC 1 cut(s) 235
PsuI RGATCY 2 cut(s) 147, 340
RseI CAYNNNNRTG 1 cut(s) 174
SaqAI TTAA 1 cut(s) 272
Sau3AI GATC 2 cut(s) 147, 340
Sau96I GGNCC 1 cut(s) 235
SchI GAGTC 1 cut(s) 114
ScrFI CCNGG 1 cut(s) 190
SetI ASST 4 cut(s) 94, 205, 240, 337
SfaNI GCATC 2 cut(s) 43, 56
Sfr274I CTCGAG 1 cut(s) 57
SinI GGWCC 1 cut(s) 235
SlaI CTCGAG 1 cut(s) 57
SmiMI CAYNNNNRTG 1 cut(s) 174
SmlI CTYRAG 2 cut(s) 57, 350
SmoI CTYRAG 2 cut(s) 57, 350
Sse9I AATT 5 cut(s) 11, 35, 63, 227, 299
SspMI CTAG 2 cut(s) 75, 332
StyD4I CCNGG 1 cut(s) 188
TaaI ACNGT 1 cut(s) 160
TaqI TCGA 1 cut(s) 58
TasI AATT 5 cut(s) 11, 35, 63, 227, 299
Tru1I TTAA 1 cut(s) 272
Tru9I TTAA 1 cut(s) 272
TspDTI ATGAA 3 cut(s) 24, 258, 302
VpaK11BI GGWCC 1 cut(s) 235
XapI RAATTY 3 cut(s) 35, 227, 299
XhoI CTCGAG 1 cut(s) 57
XspI CTAG 2 cut(s) 75, 332
Zsp2I ATGCAT 1 cut(s) 49
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.