Rh1AG092300

Cysteine desulfurase 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0024792
Physical Location & Seq
Forward (+)
16046735 .. 16049858
3124 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG092300.1

Sequence Viewer

Length: 426 bp
ATGGAATATGAATTGGCGAGAAAGAAGATTTCAGAATTTATGAATGCATCAGATTCTCGAGAAATTGTTTTTACTAGGAATGCTACTGAAGCTATCAATCTAGTTGCCTACTCATGGGGACTTCAAAATATAAAATCGAATGATGAGAAGATGCGCACCGCGCTGCTCTTTGGTCTTTCAATGTTGAGAATATACACCCTACAGATTTGGCAACTCGTCTTGACCAACAGGTATCTTTATGCAAGAAGCAAAACTGCATGGAGTGGCTCTCAGATCAGGTCACCATTGCGCCCAACCCTTCATCGACATTTAGGAGTCGGTGCAATTGCACGTGCGAGTCTTTACTTCTACAACACTAGAGAGGATGTTGATGACTTTATCCATGCCCAAAATGACATAGTCAGATTCTTTAATTCTTTCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00450 ko01100 map00450 map01100
Pfam Domains
Protein Families
Aminotran_5

Protein Analysis

141

Amino Acids

16.5

Weight (kDa)

9.79

Isoelectric Point (pI)

39.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_5 PF00266 3 - 49 4.6e-11 Aminotransferase class-V
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024792)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0329791
rosa_samantha Rh1AG092300 Rh1CG096900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 155
AccII CGCG 1 cut(s) 161
AciI CCGC 1 cut(s) 159
AcsI RAATTY 1 cut(s) 35
AcuI CTGAAG 1 cut(s) 108
AcvI CACGTG 1 cut(s) 332
AfiI CCNNNNNNNGG 1 cut(s) 114
AgsI TTSAA 3 cut(s) 125, 180, 421
AluBI AGCT 1 cut(s) 92
AluI AGCT 1 cut(s) 92
Ama87I CYCGRG 1 cut(s) 57
ApeKI GCWGC 1 cut(s) 163
ApoI RAATTY 1 cut(s) 35
AspLEI GCGC 3 cut(s) 156, 163, 291
AsuHPI GGTGA 1 cut(s) 273
AvaI CYCGRG 1 cut(s) 57
BbrPI CACGTG 1 cut(s) 332
BbvI GCAGC 1 cut(s) 150
BfaI CTAG 3 cut(s) 75, 101, 357
BfmI CTRYAG 1 cut(s) 200
BisI GCNGC 1 cut(s) 164
BlsI GCNGC 1 cut(s) 165
BmeT110I CYCGRG 1 cut(s) 57
BmsI GCATC 2 cut(s) 56, 141
BplI GAGNNNNNCTC 2 cut(s) 253, 285
BsaAI YACGTR 1 cut(s) 332
Bsc4I CCNNNNNNNGG 1 cut(s) 114
Bse3DI GCAATG 1 cut(s) 284
BseGI GGATG 1 cut(s) 370
BseLI CCNNNNNNNGG 1 cut(s) 114
BseMI GCAATG 1 cut(s) 284
BseMII CTCAG 1 cut(s) 284
BseXI GCAGC 1 cut(s) 150
Bsh1236I CGCG 1 cut(s) 161
BsiHKCI CYCGRG 1 cut(s) 57
BslFI GGGAC 1 cut(s) 132
BslI CCNNNNNNNGG 1 cut(s) 114
BsmFI GGGAC 1 cut(s) 132
BsmI GAATGC 2 cut(s) 49, 85
BsoBI CYCGRG 1 cut(s) 57
Bsp143I GATC 1 cut(s) 273
BspACI CCGC 1 cut(s) 159
BspCNI CTCAG 1 cut(s) 283
BspFNI CGCG 1 cut(s) 161
BsrDI GCAATG 1 cut(s) 284
BssMI GATC 1 cut(s) 273
BstBAI YACGTR 1 cut(s) 332
BstDEI CTNAG 1 cut(s) 270
BstEII GGTNACC 1 cut(s) 279
BstF5I GGATG 1 cut(s) 370
BstFNI CGCG 1 cut(s) 161
BstHHI GCGC 3 cut(s) 156, 163, 291
BstKTI GATC 1 cut(s) 276
BstMBI GATC 1 cut(s) 273
BstMWI GCNNNNNNNGC 2 cut(s) 89, 160
BstPI GGTNACC 1 cut(s) 279
BstSFI CTRYAG 1 cut(s) 200
BstUI CGCG 1 cut(s) 161
BstV1I GCAGC 1 cut(s) 150
BtsCI GGATG 1 cut(s) 370
CfoI GCGC 3 cut(s) 156, 163, 291
CviAII CATG 3 cut(s) 114, 258, 383
CviJI RGCY 2 cut(s) 92, 267
CviKI_1 RGCY 2 cut(s) 92, 267
DdeI CTNAG 1 cut(s) 270
DpnI GATC 1 cut(s) 275
DpnII GATC 1 cut(s) 273
Eco57I CTGAAG 1 cut(s) 108
Eco72I CACGTG 1 cut(s) 332
Eco88I CYCGRG 1 cut(s) 57
Eco91I GGTNACC 1 cut(s) 279
EcoO65I GGTNACC 1 cut(s) 279
EcoT22I ATGCAT 1 cut(s) 49
FaeI CATG 3 cut(s) 117, 261, 386
FaiI YATR 9 cut(s) 9, 41, 115, 131, 193, 240, 259, 384, 398
FaqI GGGAC 1 cut(s) 132
FatI CATG 3 cut(s) 113, 257, 382
Fnu4HI GCNGC 1 cut(s) 164
FokI GGATG 1 cut(s) 377
Fsp4HI GCNGC 1 cut(s) 164
FspAI RTGCGCAY 1 cut(s) 155
FspBI CTAG 3 cut(s) 75, 101, 357
FspI TGCGCA 1 cut(s) 155
GlaI GCGC 3 cut(s) 155, 162, 290
GluI GCNGC 1 cut(s) 164
HhaI GCGC 3 cut(s) 156, 163, 291
Hin1II CATG 3 cut(s) 117, 261, 386
Hin6I GCGC 3 cut(s) 154, 161, 289
HinP1I GCGC 3 cut(s) 154, 161, 289
HinfI GANTC 4 cut(s) 53, 315, 337, 405
HphI GGTGA 1 cut(s) 273
Hpy188I TCNGA 4 cut(s) 34, 52, 273, 404
Hpy188III TCNNGA 3 cut(s) 57, 59, 220
HpyAV CCTTC 1 cut(s) 308
HpyCH4IV ACGT 1 cut(s) 331
HpyCH4V TGCA 5 cut(s) 47, 242, 257, 323, 329
HpyF10VI GCNNNNNNNGC 2 cut(s) 89, 160
HpyF3I CTNAG 1 cut(s) 270
HpySE526I ACGT 1 cut(s) 331
Hsp92II CATG 3 cut(s) 117, 261, 386
HspAI GCGC 3 cut(s) 154, 161, 289
Kzo9I GATC 1 cut(s) 273
LpnPI CCDG 2 cut(s) 214, 262
Lsp1109I GCAGC 1 cut(s) 150
LweI GCATC 2 cut(s) 56, 141
MaeI CTAG 3 cut(s) 75, 101, 357
MaeII ACGT 1 cut(s) 331
MaeIII GTNAC 1 cut(s) 279
MalI GATC 1 cut(s) 275
MboI GATC 1 cut(s) 273
MboII GAAGA 2 cut(s) 37, 160
MfeI CAATTG 1 cut(s) 324
MluCI AATT 5 cut(s) 11, 35, 63, 324, 412
MlyI GAGTC 2 cut(s) 324, 346
MnlI CCTC 1 cut(s) 355
Mph1103I ATGCAT 1 cut(s) 49
MseI TTAA 1 cut(s) 411
MunI CAATTG 1 cut(s) 324
Mva1269I GAATGC 2 cut(s) 49, 85
MvnI CGCG 1 cut(s) 161
MwoI GCNNNNNNNGC 2 cut(s) 89, 160
NdeII GATC 1 cut(s) 273
NlaIII CATG 3 cut(s) 117, 261, 386
NmuCI GTSAC 1 cut(s) 279
NsbI TGCGCA 1 cut(s) 155
NsiI ATGCAT 1 cut(s) 49
PaeR7I CTCGAG 1 cut(s) 57
PctI GAATGC 2 cut(s) 49, 85
PfeI GAWTC 2 cut(s) 53, 405
PflFI GACNNNGTC 1 cut(s) 398
PkrI GCNGC 1 cut(s) 165
PleI GAGTC 2 cut(s) 323, 345
PmaCI CACGTG 1 cut(s) 332
PmlI CACGTG 1 cut(s) 332
PpsI GAGTC 2 cut(s) 323, 345
Ppu21I YACGTR 1 cut(s) 332
PspCI CACGTG 1 cut(s) 332
PspEI GGTNACC 1 cut(s) 279
PsyI GACNNNGTC 1 cut(s) 398
SaqAI TTAA 1 cut(s) 411
SatI GCNGC 1 cut(s) 164
Sau3AI GATC 1 cut(s) 273
SchI GAGTC 2 cut(s) 324, 346
SetI ASST 4 cut(s) 94, 233, 281, 334
SfaNI GCATC 2 cut(s) 56, 141
SfcI CTRYAG 1 cut(s) 200
Sfr274I CTCGAG 1 cut(s) 57
SlaI CTCGAG 1 cut(s) 57
SmlI CTYRAG 1 cut(s) 57
SmoI CTYRAG 1 cut(s) 57
Sse9I AATT 5 cut(s) 11, 35, 63, 324, 412
SsiI CCGC 1 cut(s) 159
SspMI CTAG 3 cut(s) 75, 101, 357
TaiI ACGT 1 cut(s) 334
TaqI TCGA 3 cut(s) 58, 137, 304
TasI AATT 5 cut(s) 11, 35, 63, 324, 412
TfiI GAWTC 2 cut(s) 53, 405
Tru1I TTAA 1 cut(s) 411
Tru9I TTAA 1 cut(s) 411
TseFI GTSAC 1 cut(s) 279
TseI GCWGC 1 cut(s) 163
Tsp45I GTSAC 1 cut(s) 279
TspDTI ATGAA 3 cut(s) 24, 56, 290
Tth111I GACNNNGTC 1 cut(s) 398
XapI RAATTY 1 cut(s) 35
XhoI CTCGAG 1 cut(s) 57
XspI CTAG 3 cut(s) 75, 101, 357
Zsp2I ATGCAT 1 cut(s) 49
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.