RchiOBHm_Chr1g0330091

Belongs to the peptidase S10 family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Forward (+)
19752403 .. 19753164
762 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 129 bp
ATGATCAAAGTTGGTGATACTGATGGCAGAGCTCCGGTGACATCAACTAGATATGCATTGAAGAAACTGGGATTGAAGATCAAGCAAGACTGGACTCCATGGTACAATAGCAAACAGGTGGGCTGGTGA

Protein Analysis

42

Amino Acids

4.84

Weight (kDa)

10.0

Isoelectric Point (pI)

11.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0022309)

Species Orthologous Gene IDs
malus_domestica MD13G1004300.v1.1
pyrus_communis pycom13g00370
rosa_chinensis RchiOBHm_Chr1g0330091
rosa_roxburghii Rroxscaffold_4G00320390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 104
AgsI TTSAA 2 cut(s) 61, 76
AluBI AGCT 1 cut(s) 32
AluI AGCT 1 cut(s) 32
Alw21I GWGCWC 1 cut(s) 34
AsuHPI GGTGA 2 cut(s) 26, 49
BanII GRGCYC 1 cut(s) 34
Bbv12I GWGCWC 1 cut(s) 34
BccI CCATC 1 cut(s) 17
BclI TGATCA 1 cut(s) 3
BfaI CTAG 1 cut(s) 48
BmrI ACTGGG 1 cut(s) 77
BmuI ACTGGG 1 cut(s) 77
BsaJI CCNNGG 1 cut(s) 98
BsaWI WCCGGW 1 cut(s) 34
Bse1I ACTGG 2 cut(s) 72, 95
BseDI CCNNGG 1 cut(s) 98
BseNI ACTGG 2 cut(s) 72, 95
BsiHKAI GWGCWC 1 cut(s) 34
BsiSI CCGG 1 cut(s) 35
Bsp1286I GDGCHC 1 cut(s) 34
Bsp143I GATC 2 cut(s) 3, 78
Bsp19I CCATGG 1 cut(s) 98
BsrI ACTGG 2 cut(s) 72, 95
BssECI CCNNGG 1 cut(s) 98
BssMI GATC 2 cut(s) 3, 78
BssT1I CCWWGG 1 cut(s) 98
BstDSI CCRYGG 1 cut(s) 98
BstKTI GATC 2 cut(s) 6, 81
BstMBI GATC 2 cut(s) 3, 78
BtgI CCRYGG 1 cut(s) 98
Csp6I GTAC 1 cut(s) 103
CviAII CATG 1 cut(s) 99
CviJI RGCY 2 cut(s) 32, 123
CviKI_1 RGCY 2 cut(s) 32, 123
CviQI GTAC 1 cut(s) 103
DpnI GATC 2 cut(s) 5, 80
DpnII GATC 2 cut(s) 3, 78
Ecl136II GAGCTC 1 cut(s) 32
Eco130I CCWWGG 1 cut(s) 98
Eco24I GRGCYC 1 cut(s) 34
Eco53kI GAGCTC 1 cut(s) 32
EcoICRI GAGCTC 1 cut(s) 32
EcoT14I CCWWGG 1 cut(s) 98
EcoT22I ATGCAT 1 cut(s) 58
EcoT38I GRGCYC 1 cut(s) 34
ErhI CCWWGG 1 cut(s) 98
FaeI CATG 1 cut(s) 102
FaiI YATR 2 cut(s) 54, 100
FatI CATG 1 cut(s) 98
FbaI TGATCA 1 cut(s) 3
FriOI GRGCYC 1 cut(s) 34
FspBI CTAG 1 cut(s) 48
HapII CCGG 1 cut(s) 35
Hin1II CATG 1 cut(s) 102
HinfI GANTC 1 cut(s) 94
HpaII CCGG 1 cut(s) 35
HphI GGTGA 2 cut(s) 26, 49
HpyCH4V TGCA 1 cut(s) 56
Hsp92II CATG 1 cut(s) 102
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 2 cut(s) 3, 78
LmnI GCTCC 1 cut(s) 37
LpnPI CCDG 5 cut(s) 48, 53, 76, 101, 109
MaeI CTAG 1 cut(s) 48
MaeIII GTNAC 1 cut(s) 37
MalI GATC 2 cut(s) 5, 80
MboI GATC 2 cut(s) 3, 78
MboII GAAGA 2 cut(s) 73, 88
MhlI GDGCHC 1 cut(s) 34
MlyI GAGTC 1 cut(s) 88
Mph1103I ATGCAT 1 cut(s) 58
MspI CCGG 1 cut(s) 35
NcoI CCATGG 1 cut(s) 98
NdeII GATC 2 cut(s) 3, 78
NlaIII CATG 1 cut(s) 102
NmuCI GTSAC 1 cut(s) 37
NsiI ATGCAT 1 cut(s) 58
PleI GAGTC 1 cut(s) 88
PpsI GAGTC 1 cut(s) 88
Psp124BI GAGCTC 1 cut(s) 34
RsaI GTAC 1 cut(s) 104
RsaNI GTAC 1 cut(s) 103
SacI GAGCTC 1 cut(s) 34
Sau3AI GATC 2 cut(s) 3, 78
SchI GAGTC 1 cut(s) 88
SduI GDGCHC 1 cut(s) 34
SetI ASST 2 cut(s) 34, 120
SgeI CNNG 7 cut(s) 47, 60, 80, 94, 98, 103, 111
SspMI CTAG 1 cut(s) 48
SstI GAGCTC 1 cut(s) 34
StyI CCWWGG 1 cut(s) 98
TseFI GTSAC 1 cut(s) 37
Tsp45I GTSAC 1 cut(s) 37
XspI CTAG 1 cut(s) 48
Zsp2I ATGCAT 1 cut(s) 58
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.