RchiOBHm_Chr1g0330621

phosphatase 2C

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Reverse (-)
20397905 .. 20398726
822 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 225 bp
ATGTATATGTGTGTATGGGATGTGATTTCGAACGAAGAAGCAGTGGAAATTGTGGGTTCAACAGCAGAGAGGGAAAAGTGTGCCAAGCGACTGGTGGAATGTGCAGCTGCAGCATGGAGGAAGAAGAGGTGGAGTTGTGCAATGGATGACATTTCCGCTATTTGCCTCTTCTTTCACTCTTCCTCCTTGTCTCAGCAAGTTCACCCCATTAGTACACTTAAATAG

Protein Analysis

74

Amino Acids

8.37

Weight (kDa)

6.7

Isoelectric Point (pI)

60.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0021303)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0330621
rosa_multiflora Rmu_sc0000167.1_g000004
rosa_rugosa Rorug01G0089900
rosa_samantha Rh1AG109500 Rh1DG113200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 156
AfaI GTAC 1 cut(s) 214
AgsI TTSAA 1 cut(s) 60
AluBI AGCT 1 cut(s) 107
AluI AGCT 1 cut(s) 107
Alw26I GTCTC 1 cut(s) 195
ApeKI GCWGC 3 cut(s) 104, 107, 110
AsuHPI GGTGA 1 cut(s) 194
AsuII TTCGAA 1 cut(s) 29
BbvI GCAGC 3 cut(s) 94, 116, 122
BcoDI GTCTC 1 cut(s) 195
BfmI CTRYAG 1 cut(s) 108
BisI GCNGC 3 cut(s) 105, 108, 111
BlsI GCNGC 3 cut(s) 106, 109, 112
Bpu14I TTCGAA 1 cut(s) 29
BsaXI ACNNNNNCTCC 2 cut(s) 167, 197
Bse1I ACTGG 1 cut(s) 96
Bse3DI GCAATG 1 cut(s) 147
BseGI GGATG 2 cut(s) 25, 151
BseMI GCAATG 1 cut(s) 147
BseMII CTCAG 1 cut(s) 206
BseNI ACTGG 1 cut(s) 96
BseXI GCAGC 3 cut(s) 94, 116, 122
BsgI GTGCAG 1 cut(s) 123
BsmAI GTCTC 1 cut(s) 195
Bsp119I TTCGAA 1 cut(s) 29
BspACI CCGC 1 cut(s) 156
BspCNI CTCAG 1 cut(s) 205
BspMAI CTGCAG 1 cut(s) 112
BspT104I TTCGAA 1 cut(s) 29
BsrDI GCAATG 1 cut(s) 147
BsrI ACTGG 1 cut(s) 96
Bst6I CTCTTC 3 cut(s) 119, 173, 184
BstBI TTCGAA 1 cut(s) 29
BstDEI CTNAG 1 cut(s) 192
BstF5I GGATG 2 cut(s) 25, 151
BstMAI GTCTC 1 cut(s) 195
BstMWI GCNNNNNNNGC 1 cut(s) 110
BstSFI CTRYAG 1 cut(s) 108
BstV1I GCAGC 3 cut(s) 94, 116, 122
BstXI CCANNNNNNTGG 1 cut(s) 91
BtsCI GGATG 2 cut(s) 25, 151
BtsI GCAGTG 1 cut(s) 48
BtsIMutI CAGTG 1 cut(s) 48
Csp6I GTAC 1 cut(s) 213
CviAII CATG 1 cut(s) 114
CviJI RGCY 1 cut(s) 107
CviKI_1 RGCY 1 cut(s) 107
CviQI GTAC 1 cut(s) 213
DdeI CTNAG 1 cut(s) 192
Eam1104I CTCTTC 3 cut(s) 119, 173, 184
EarI CTCTTC 3 cut(s) 119, 173, 184
FaeI CATG 1 cut(s) 117
FaiI YATR 4 cut(s) 6, 8, 16, 115
FatI CATG 1 cut(s) 113
Fnu4HI GCNGC 3 cut(s) 105, 108, 111
FokI GGATG 2 cut(s) 32, 158
Fsp4HI GCNGC 3 cut(s) 105, 108, 111
GluI GCNGC 3 cut(s) 105, 108, 111
Hin1II CATG 1 cut(s) 117
HphI GGTGA 1 cut(s) 194
Hpy166II GTNNAC 2 cut(s) 202, 215
Hpy8I GTNNAC 2 cut(s) 202, 215
HpyCH4V TGCA 3 cut(s) 104, 110, 140
HpyF10VI GCNNNNNNNGC 1 cut(s) 110
HpyF3I CTNAG 1 cut(s) 192
Hsp92II CATG 1 cut(s) 117
LpnPI CCDG 1 cut(s) 77
Lsp1109I GCAGC 3 cut(s) 94, 116, 122
MboII GAAGA 5 cut(s) 47, 133, 136, 160, 171
MluCI AATT 1 cut(s) 48
MnlI CCTC 5 cut(s) 63, 111, 120, 176, 193
MseI TTAA 1 cut(s) 219
MspA1I CMGCKG 1 cut(s) 107
MwoI GCNNNNNNNGC 1 cut(s) 110
NlaIII CATG 1 cut(s) 117
NspV TTCGAA 1 cut(s) 29
PkrI GCNGC 3 cut(s) 106, 109, 112
PstI CTGCAG 1 cut(s) 112
PvuII CAGCTG 1 cut(s) 107
RsaI GTAC 1 cut(s) 214
RsaNI GTAC 1 cut(s) 213
SaqAI TTAA 1 cut(s) 219
SatI GCNGC 3 cut(s) 105, 108, 111
SetI ASST 2 cut(s) 109, 131
SfcI CTRYAG 1 cut(s) 108
SfuI TTCGAA 1 cut(s) 29
SgeI CNNG 5 cut(s) 97, 104, 126, 199, 209
Sse9I AATT 1 cut(s) 48
SsiI CCGC 1 cut(s) 156
TaqI TCGA 1 cut(s) 29
TasI AATT 1 cut(s) 48
TatI WGTACW 1 cut(s) 212
Tru1I TTAA 1 cut(s) 219
Tru9I TTAA 1 cut(s) 219
TscAI CASTG 1 cut(s) 48
TseI GCWGC 3 cut(s) 104, 107, 110
TspRI CASTG 1 cut(s) 48
XcmI CCANNNNNNNNNTGG 1 cut(s) 91
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.