Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0021303

Physical Location & Seq

Genomic Coordinates Reverse (-)

20800968 .. 20813233

Gene Structure 12266 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG113200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGAAACTAATGATGATGATACTAATATTGGGAGGAGACCTGCAAGGGTTGAAGAGGGTGGAGGACGTGGATGGCACAACAAGAGTGAACTGCAAAAAGGAAGGAAAAATGAAAGAGATGAAGAGGATCATGATTATAGAAGGCCCAGGGAAGGTCTGGAATAGGAACTTGGAAATAGAAAGCATGGTACTAGAGAGGAAGAAGGGGCAAATGAGGATATTGAGAGGGATAGACATATCGATTACAGAAGAGCAAAATATGATGGAGTCTAGAGCAAGTGAGAGGAGAAGGCATGAAACTAACATAATGAAGAGGAGCGTAAGTCTAGAAGATGGAAAAGAGTATCTCATCCAGAAACTGCTGAAGCATCAGAGAGTAACAGCCAAGATATCATTGCAGCTCCAAATGAAAATGCACGCTGAAAAGCAGCTGAGCTCTAGTTGGATTCTCATACGAGCTAGTAGTCTCGGAGTACCTACAACTATTGAATGGCTGAATGATGTTTTGGCCCCTGGTGGGAGAGTTGGCATTGACCCTGTATGGGATGTGATTTCGAACGAAGAAGCAGTGGAAATTGTGGGTTCAACAGCAGAGAGGGAAAAGTGTGCCAAGCGACTGGTGGAATGTGCAGCTGCAACATGGAGGAAGAAGAGGTGGGGTTGTGCAATGGATGACATTTCCGCTATTTGCCTCTTTTTTCACTCTTCCTCTTTGTCTCAGCAAGTTCACCCCATTAGTACACTTAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0001101 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009819 GO:0009987 GO:0010035 GO:0016020 GO:0016043 GO:0016311 GO:0019538 GO:0036211 GO:0040008 GO:0042221 GO:0043170 GO:0043393 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045926 GO:0048519 GO:0050789 GO:0050896 GO:0051098 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0071944 GO:1901564 GO:1901700 GO:1904526

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

249

Amino Acids

28.37

Weight (kDa)

9.38

Isoelectric Point (pI)

59.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021303)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0330621
rosa_multiflora	Rmu_sc0000167.1_g000004
rosa_rugosa	Rorug01G0089900
rosa_samantha	Rh1AG109500 Rh1DG113200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	48
AciI	CCGC	1 cut(s)	681
AclWI	GGATC	1 cut(s)	134
AcuI	CTGAAG	1 cut(s)	383
AfaI	GTAC	3 cut(s)	189, 474, 739
AfiI	CCNNNNNNNGG	3 cut(s)	151, 516, 541
AgsI	TTSAA	3 cut(s)	52, 488, 585
AjiI	CACGTC	1 cut(s)	67
AjnI	CCWGG	2 cut(s)	145, 511
AjuI	GAANNNNNNNTTGG	4 cut(s)	152, 184, 488, 520
AluBI	AGCT	5 cut(s)	400, 430, 435, 458, 632
AluI	AGCT	5 cut(s)	400, 430, 435, 458, 632
Alw21I	GWGCWC	1 cut(s)	437
Alw26I	GTCTC	3 cut(s)	30, 470, 720
AlwI	GGATC	1 cut(s)	134
AlwNI	CAGNNNCTG	1 cut(s)	358
AoxI	GGCC	2 cut(s)	142, 507
ApeKI	GCWGC	4 cut(s)	397, 427, 629, 632
AspS9I	GGNCC	2 cut(s)	143, 508
AsuHPI	GGTGA	1 cut(s)	719
AsuII	TTCGAA	1 cut(s)	554
BanII	GRGCYC	1 cut(s)	437
Bbv12I	GWGCWC	1 cut(s)	437
BbvI	GCAGC	4 cut(s)	409, 439, 619, 641
BccI	CCATC	3 cut(s)	65, 256, 326
BciT130I	CCWGG	2 cut(s)	147, 513
BcoDI	GTCTC	3 cut(s)	30, 470, 720
BfaI	CTAG	5 cut(s)	191, 270, 326, 438, 459
BfuAI	ACCTGC	1 cut(s)	48
BisI	GCNGC	4 cut(s)	398, 428, 630, 633
BlpI	GCTNAGC	1 cut(s)	431
BlsI	GCNGC	4 cut(s)	399, 429, 631, 634
Bme1390I	CCNGG	2 cut(s)	147, 513
BmgBI	CACGTC	1 cut(s)	67
BmgT120I	GGNCC	2 cut(s)	143, 508
BmiI	GGNNCC	1 cut(s)	510
BmrFI	CCNGG	2 cut(s)	147, 513
BmsI	GCATC	1 cut(s)	376
Bpu1102I	GCTNAGC	1 cut(s)	431
Bpu14I	TTCGAA	1 cut(s)	554
Bsa29I	ATCGAT	1 cut(s)	239
BsaI	GGTCTC	1 cut(s)	30
BsaJI	CCNNGG	3 cut(s)	145, 146, 511
BsaXI	ACNNNNNCTCC	2 cut(s)	307, 337
Bsc4I	CCNNNNNNNGG	3 cut(s)	151, 516, 541
Bse1I	ACTGG	1 cut(s)	621
Bse3DI	GCAATG	2 cut(s)	392, 672
BseBI	CCWGG	2 cut(s)	147, 513
BseCI	ATCGAT	1 cut(s)	239
BseDI	CCNNGG	3 cut(s)	145, 146, 511
BseGI	GGATG	4 cut(s)	76, 348, 550, 676
BseLI	CCNNNNNNNGG	3 cut(s)	151, 516, 541
BseMI	GCAATG	2 cut(s)	392, 672
BseMII	CTCAG	2 cut(s)	422, 731
BseNI	ACTGG	1 cut(s)	621
BseRI	GAGGAG	3 cut(s)	48, 298, 328
BseXI	GCAGC	4 cut(s)	409, 439, 619, 641
BsgI	GTGCAG	1 cut(s)	648
BshFI	GGCC	2 cut(s)	144, 509
BshVI	ATCGAT	1 cut(s)	239
BsiHKAI	GWGCWC	1 cut(s)	437
BslI	CCNNNNNNNGG	3 cut(s)	151, 516, 541
BsmAI	GTCTC	3 cut(s)	30, 470, 720
BsnI	GGCC	2 cut(s)	144, 509
Bso31I	GGTCTC	1 cut(s)	30
Bsp119I	TTCGAA	1 cut(s)	554
Bsp1286I	GDGCHC	1 cut(s)	437
Bsp143I	GATC	1 cut(s)	126
Bsp1720I	GCTNAGC	1 cut(s)	431
BspACI	CCGC	1 cut(s)	681
BspANI	GGCC	2 cut(s)	144, 509
BspCNI	CTCAG	2 cut(s)	423, 730
BspDI	ATCGAT	1 cut(s)	239
BspHI	TCATGA	1 cut(s)	129
BspLI	GGNNCC	1 cut(s)	510
BspMI	ACCTGC	1 cut(s)	48
BspPI	GGATC	1 cut(s)	134
BspQI	GCTCTTC	1 cut(s)	243
BspT104I	TTCGAA	1 cut(s)	554
BspTNI	GGTCTC	1 cut(s)	30
BsrDI	GCAATG	2 cut(s)	392, 672
BsrI	ACTGG	1 cut(s)	621
BssECI	CCNNGG	3 cut(s)	145, 146, 511
BssMI	GATC	1 cut(s)	126
Bst2UI	CCWGG	2 cut(s)	147, 513
Bst6I	CTCTTC	6 cut(s)	47, 116, 243, 305, 644, 709
BstBI	TTCGAA	1 cut(s)	554
BstC8I	GCNNGC	1 cut(s)	417
BstDEI	CTNAG	2 cut(s)	431, 717
BstF5I	GGATG	4 cut(s)	76, 348, 550, 676
BstKTI	GATC	1 cut(s)	129
BstMAI	GTCTC	3 cut(s)	30, 470, 720
BstMBI	GATC	1 cut(s)	126
BstNI	CCWGG	2 cut(s)	147, 513
BstSCI	CCNGG	2 cut(s)	145, 511
BstV1I	GCAGC	4 cut(s)	409, 439, 619, 641
BstXI	CCANNNNNNTGG	1 cut(s)	616
Bsu15I	ATCGAT	1 cut(s)	239
BsuRI	GGCC	2 cut(s)	144, 509
BsuTUI	ATCGAT	1 cut(s)	239
BtrI	CACGTC	1 cut(s)	67
BtsCI	GGATG	4 cut(s)	76, 348, 550, 676
BtsI	GCAGTG	1 cut(s)	573
BtsIMutI	CAGTG	1 cut(s)	573
BveI	ACCTGC	1 cut(s)	48
Cac8I	GCNNGC	1 cut(s)	417
CaiI	CAGNNNCTG	1 cut(s)	358
CciI	TCATGA	1 cut(s)	129
Cfr13I	GGNCC	2 cut(s)	143, 508
ClaI	ATCGAT	1 cut(s)	239
Csp6I	GTAC	3 cut(s)	188, 473, 738
CviAII	CATG	4 cut(s)	130, 184, 293, 639
CviJI	RGCY	9 cut(s)	144, 383, 400, 430, 435, 458, 493, 509, 632
CviKI_1	RGCY	9 cut(s)	144, 383, 400, 430, 435, 458, 493, 509, 632
CviQI	GTAC	3 cut(s)	188, 473, 738
DdeI	CTNAG	2 cut(s)	431, 717
DpnI	GATC	1 cut(s)	128
DpnII	GATC	1 cut(s)	126
Eam1104I	CTCTTC	6 cut(s)	47, 116, 243, 305, 644, 709
EarI	CTCTTC	6 cut(s)	47, 116, 243, 305, 644, 709
Ecl136II	GAGCTC	1 cut(s)	435
Eco24I	GRGCYC	1 cut(s)	437
Eco31I	GGTCTC	1 cut(s)	30
Eco32I	GATATC	1 cut(s)	390
Eco53kI	GAGCTC	1 cut(s)	435
Eco57I	CTGAAG	1 cut(s)	383
EcoICRI	GAGCTC	1 cut(s)	435
EcoRII	CCWGG	2 cut(s)	145, 511
EcoRV	GATATC	1 cut(s)	390
EcoT38I	GRGCYC	1 cut(s)	437
FaeI	CATG	4 cut(s)	133, 187, 296, 642
FatI	CATG	4 cut(s)	129, 183, 292, 638
Fnu4HI	GCNGC	4 cut(s)	398, 428, 630, 633
FokI	GGATG	4 cut(s)	83, 335, 557, 683
FriOI	GRGCYC	1 cut(s)	437
Fsp4HI	GCNGC	4 cut(s)	398, 428, 630, 633
FspBI	CTAG	5 cut(s)	191, 270, 326, 438, 459
GluI	GCNGC	4 cut(s)	398, 428, 630, 633
HaeIII	GGCC	2 cut(s)	144, 509
Hin1II	CATG	4 cut(s)	133, 187, 296, 642
HinfI	GANTC	2 cut(s)	266, 445
HphI	GGTGA	1 cut(s)	719
Hpy166II	GTNNAC	3 cut(s)	88, 727, 740
Hpy188I	TCNGA	2 cut(s)	372, 470
Hpy188III	TCNNGA	5 cut(s)	130, 157, 270, 326, 352
Hpy8I	GTNNAC	3 cut(s)	88, 727, 740
HpyAV	CCTTC	5 cut(s)	95, 134, 145, 196, 282
HpyCH4IV	ACGT	1 cut(s)	66
HpyCH4V	TGCA	7 cut(s)	43, 93, 397, 415, 629, 635, 665
HpyF3I	CTNAG	2 cut(s)	431, 717
HpySE526I	ACGT	1 cut(s)	66
Hsp92II	CATG	4 cut(s)	133, 187, 296, 642
Kzo9I	GATC	1 cut(s)	126
LguI	GCTCTTC	1 cut(s)	243
LmnI	GCTCC	2 cut(s)	315, 405
LpnPI	CCDG	9 cut(s)	53, 132, 142, 159, 365, 498, 525, 549, 602
Lsp1109I	GCAGC	4 cut(s)	409, 439, 619, 641
LweI	GCATC	1 cut(s)	376
MaeI	CTAG	5 cut(s)	191, 270, 326, 438, 459
MaeII	ACGT	1 cut(s)	66
MaeIII	GTNAC	1 cut(s)	376
MalI	GATC	1 cut(s)	128
MboI	GATC	1 cut(s)	126
MhlI	GDGCHC	1 cut(s)	437
MluCI	AATT	1 cut(s)	573
MlyI	GAGTC	1 cut(s)	275
MmeI	TCCRAC	1 cut(s)	422
MseI	TTAA	1 cut(s)	744
MspA1I	CMGCKG	2 cut(s)	430, 632
MspR9I	CCNGG	2 cut(s)	147, 513
MvaI	CCWGG	2 cut(s)	147, 513
NdeII	GATC	1 cut(s)	126
NlaIII	CATG	4 cut(s)	133, 187, 296, 642
NlaIV	GGNNCC	1 cut(s)	510
NspV	TTCGAA	1 cut(s)	554
PagI	TCATGA	1 cut(s)	129
PasI	CCCWGGG	1 cut(s)	146
PciSI	GCTCTTC	1 cut(s)	243
PfeI	GAWTC	1 cut(s)	445
PkrI	GCNGC	4 cut(s)	399, 429, 631, 634
PleI	GAGTC	1 cut(s)	274
PpsI	GAGTC	1 cut(s)	274
Psp124BI	GAGCTC	1 cut(s)	437
Psp6I	CCWGG	2 cut(s)	145, 511
PspGI	CCWGG	2 cut(s)	145, 511
PspN4I	GGNNCC	1 cut(s)	510
PspPI	GGNCC	2 cut(s)	143, 508
PstNI	CAGNNNCTG	1 cut(s)	358
PvuII	CAGCTG	2 cut(s)	430, 632
RsaI	GTAC	3 cut(s)	189, 474, 739
RsaNI	GTAC	3 cut(s)	188, 473, 738
SacI	GAGCTC	1 cut(s)	437
SapI	GCTCTTC	1 cut(s)	243
SaqAI	TTAA	1 cut(s)	744
SatI	GCNGC	4 cut(s)	398, 428, 630, 633
Sau3AI	GATC	1 cut(s)	126
Sau96I	GGNCC	2 cut(s)	143, 508
SchI	GAGTC	1 cut(s)	275
ScrFI	CCNGG	2 cut(s)	147, 513
SduI	GDGCHC	1 cut(s)	437
SfaNI	GCATC	1 cut(s)	376
SfuI	TTCGAA	1 cut(s)	554
Sse9I	AATT	1 cut(s)	573
SsiI	CCGC	1 cut(s)	681
SspI	AATATT	1 cut(s)	27
SspMI	CTAG	5 cut(s)	191, 270, 326, 438, 459
SstI	GAGCTC	1 cut(s)	437
StyD4I	CCNGG	2 cut(s)	145, 511
TaiI	ACGT	1 cut(s)	69
TaqI	TCGA	2 cut(s)	239, 554
TasI	AATT	1 cut(s)	573
TatI	WGTACW	1 cut(s)	737
TfiI	GAWTC	1 cut(s)	445
Tru1I	TTAA	1 cut(s)	744
Tru9I	TTAA	1 cut(s)	744
TscAI	CASTG	1 cut(s)	573
TseI	GCWGC	4 cut(s)	397, 427, 629, 632
TspDTI	ATGAA	6 cut(s)	17, 125, 134, 309, 323, 422
TspRI	CASTG	1 cut(s)	573
XbaI	TCTAGA	2 cut(s)	269, 325
XcmI	CCANNNNNNNNNTGG	2 cut(s)	153, 616
XspI	CTAG	5 cut(s)	191, 270, 326, 438, 459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.