Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000167.1

Orthogroup ID

OG0021303

Physical Location & Seq

Genomic Coordinates Forward (+)

15221 .. 17448

Gene Structure 2228 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000167.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

atggcccagactcctactggaggcagtggtggggaattttctgcaatgggcgaaagcctgacggagcaatgccgcatggaggtagaaggcctacggctcatgaacttcttttcccggagaagaagcaatgacggtggctttttaagtccgccgtcaaatcccagggctcaaccctggacaggcggtggaaactaccaagctggagtacgtaacacttttgcgcaaagcgcattggttacaactcaccagtttgtcaaaactacttctgggaaattcacttggaaagtacctgtatgggatgtgatttcgaacgaagaagcagtggaaattgtgggttcaacagcagagagggaaaagtgtgccaagcgactggtggaatgtgcagctgcagcatggaggaagaagaggtggggttgtgcaatggatgacatttccgctatttgcctcttctttcactcttcctctttgtctcagcaagttcaccccattagtacacttaaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0001101 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009819 GO:0009987 GO:0010035 GO:0016020 GO:0016043 GO:0016311 GO:0019538 GO:0036211 GO:0040008 GO:0042221 GO:0043170 GO:0043393 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045926 GO:0048519 GO:0050789 GO:0050896 GO:0051098 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0071944 GO:1901564 GO:1901700 GO:1904526

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

167

Amino Acids

18.32

Weight (kDa)

8.93

Isoelectric Point (pI)

49.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021303)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0330621
rosa_multiflora	Rmu_sc0000167.1_g000004
rosa_rugosa	Rorug01G0089900
rosa_samantha	Rh1AG109500 Rh1DG113200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	222
AciI	CCGC	4 cut(s)	73, 149, 183, 435
AcsI	RAATTY	2 cut(s)	35, 272
AfaI	GTAC	3 cut(s)	207, 288, 493
AfiI	CCNNNNNNNGG	3 cut(s)	20, 79, 179
AgsI	TTSAA	1 cut(s)	339
AjnI	CCWGG	2 cut(s)	161, 173
AloI	GAACNNNNNNTCC	2 cut(s)	95, 127
AluBI	AGCT	2 cut(s)	200, 386
AluI	AGCT	2 cut(s)	200, 386
Alw26I	GTCTC	1 cut(s)	474
AoxI	GGCC	2 cut(s)	3, 88
ApeKI	GCWGC	3 cut(s)	383, 386, 389
ApoI	RAATTY	2 cut(s)	35, 272
AspLEI	GCGC	2 cut(s)	223, 230
AspS9I	GGNCC	1 cut(s)	4
AsuC2I	CCSGG	1 cut(s)	115
AsuHPI	GGTGA	2 cut(s)	236, 473
AsuII	TTCGAA	1 cut(s)	308
BanII	GRGCYC	1 cut(s)	169
BbvI	GCAGC	3 cut(s)	373, 395, 401
BceAI	ACGGC	2 cut(s)	110, 136
BciT130I	CCWGG	2 cut(s)	163, 175
BcnI	CCSGG	1 cut(s)	115
BcoDI	GTCTC	1 cut(s)	474
BfmI	CTRYAG	1 cut(s)	387
BisI	GCNGC	4 cut(s)	73, 384, 387, 390
BlsI	GCNGC	4 cut(s)	74, 385, 388, 391
Bme1390I	CCNGG	3 cut(s)	115, 163, 175
BmgT120I	GGNCC	1 cut(s)	4
BmrFI	CCNGG	3 cut(s)	115, 163, 175
BpmI	CTGGAG	2 cut(s)	39, 222
Bpu14I	TTCGAA	1 cut(s)	308
BpuMI	CCSGG	1 cut(s)	115
BsaAI	YACGTR	1 cut(s)	209
BsaJI	CCNNGG	3 cut(s)	161, 162, 173
Bsc4I	CCNNNNNNNGG	3 cut(s)	20, 79, 179
Bse1I	ACTGG	3 cut(s)	22, 247, 375
Bse3DI	GCAATG	4 cut(s)	51, 74, 133, 426
BseBI	CCWGG	2 cut(s)	163, 175
BseDI	CCNNGG	3 cut(s)	161, 162, 173
BseGI	GGATG	2 cut(s)	304, 430
BseLI	CCNNNNNNNGG	3 cut(s)	20, 79, 179
BseMI	GCAATG	4 cut(s)	51, 74, 133, 426
BseMII	CTCAG	1 cut(s)	485
BseNI	ACTGG	3 cut(s)	22, 247, 375
BseXI	GCAGC	3 cut(s)	373, 395, 401
BsgI	GTGCAG	1 cut(s)	402
BshFI	GGCC	2 cut(s)	5, 90
BsiSI	CCGG	1 cut(s)	115
BslI	CCNNNNNNNGG	3 cut(s)	20, 79, 179
BsmAI	GTCTC	1 cut(s)	474
BsnI	GGCC	2 cut(s)	5, 90
Bsp119I	TTCGAA	1 cut(s)	308
Bsp1286I	GDGCHC	1 cut(s)	169
BspACI	CCGC	4 cut(s)	73, 149, 183, 435
BspANI	GGCC	2 cut(s)	5, 90
BspCNI	CTCAG	1 cut(s)	484
BspHI	TCATGA	1 cut(s)	99
BspMAI	CTGCAG	1 cut(s)	391
BspT104I	TTCGAA	1 cut(s)	308
BsrDI	GCAATG	4 cut(s)	51, 74, 133, 426
BsrI	ACTGG	3 cut(s)	22, 247, 375
BssECI	CCNNGG	3 cut(s)	161, 162, 173
Bst2UI	CCWGG	2 cut(s)	163, 175
Bst4CI	ACNGT	1 cut(s)	134
Bst6I	CTCTTC	3 cut(s)	398, 452, 463
BstBAI	YACGTR	1 cut(s)	209
BstBI	TTCGAA	1 cut(s)	308
BstDEI	CTNAG	1 cut(s)	471
BstENI	CCTNNNNNAGG	1 cut(s)	18
BstF5I	GGATG	2 cut(s)	304, 430
BstHHI	GCGC	2 cut(s)	223, 230
BstMAI	GTCTC	1 cut(s)	474
BstMWI	GCNNNNNNNGC	2 cut(s)	227, 389
BstNI	CCWGG	2 cut(s)	163, 175
BstSCI	CCNGG	3 cut(s)	113, 161, 173
BstSFI	CTRYAG	1 cut(s)	387
BstSNI	TACGTA	1 cut(s)	209
BstV1I	GCAGC	3 cut(s)	373, 395, 401
BstXI	CCANNNNNNTGG	1 cut(s)	370
BsuRI	GGCC	2 cut(s)	5, 90
BtsCI	GGATG	2 cut(s)	304, 430
BtsI	GCAGTG	2 cut(s)	31, 327
BtsIMutI	CAGTG	2 cut(s)	31, 327
CciI	TCATGA	1 cut(s)	99
CfoI	GCGC	2 cut(s)	223, 230
Cfr13I	GGNCC	1 cut(s)	4
Csp6I	GTAC	3 cut(s)	206, 287, 492
CspCI	CAANNNNNGTGG	2 cut(s)	115, 150
CviAII	CATG	3 cut(s)	76, 100, 393
CviJI	RGCY	8 cut(s)	5, 57, 90, 97, 138, 167, 200, 386
CviKI_1	RGCY	8 cut(s)	5, 57, 90, 97, 138, 167, 200, 386
CviQI	GTAC	3 cut(s)	206, 287, 492
DdeI	CTNAG	1 cut(s)	471
Eam1104I	CTCTTC	3 cut(s)	398, 452, 463
EarI	CTCTTC	3 cut(s)	398, 452, 463
EciI	GGCGGA	1 cut(s)	138
Eco105I	TACGTA	1 cut(s)	209
Eco147I	AGGCCT	1 cut(s)	90
Eco24I	GRGCYC	1 cut(s)	169
EcoNI	CCTNNNNNAGG	1 cut(s)	18
EcoRII	CCWGG	2 cut(s)	161, 173
EcoT38I	GRGCYC	1 cut(s)	169
FaeI	CATG	3 cut(s)	79, 103, 396
FaiI	YATR	4 cut(s)	77, 101, 295, 394
FatI	CATG	3 cut(s)	75, 99, 392
Fnu4HI	GCNGC	4 cut(s)	73, 384, 387, 390
FokI	GGATG	2 cut(s)	311, 437
FriOI	GRGCYC	1 cut(s)	169
Fsp4HI	GCNGC	4 cut(s)	73, 384, 387, 390
FspI	TGCGCA	1 cut(s)	222
GlaI	GCGC	2 cut(s)	222, 229
GluI	GCNGC	4 cut(s)	73, 384, 387, 390
GsuI	CTGGAG	2 cut(s)	39, 222
HaeIII	GGCC	2 cut(s)	5, 90
HapII	CCGG	1 cut(s)	115
HhaI	GCGC	2 cut(s)	223, 230
Hin1II	CATG	3 cut(s)	79, 103, 396
Hin6I	GCGC	2 cut(s)	221, 228
HinP1I	GCGC	2 cut(s)	221, 228
HinfI	GANTC	1 cut(s)	10
HpaII	CCGG	1 cut(s)	115
HphI	GGTGA	2 cut(s)	236, 473
Hpy166II	GTNNAC	2 cut(s)	481, 494
Hpy188III	TCNNGA	1 cut(s)	100
Hpy8I	GTNNAC	2 cut(s)	481, 494
HpyAV	CCTTC	1 cut(s)	80
HpyCH4III	ACNGT	1 cut(s)	134
HpyCH4IV	ACGT	1 cut(s)	208
HpyCH4V	TGCA	4 cut(s)	44, 383, 389, 419
HpyF10VI	GCNNNNNNNGC	2 cut(s)	227, 389
HpyF3I	CTNAG	1 cut(s)	471
HpySE526I	ACGT	1 cut(s)	208
Hsp92II	CATG	3 cut(s)	79, 103, 396
HspAI	GCGC	2 cut(s)	221, 228
LmnI	GCTCC	1 cut(s)	64
Lsp1109I	GCAGC	3 cut(s)	373, 395, 401
MaeII	ACGT	1 cut(s)	208
MaeIII	GTNAC	2 cut(s)	209, 235
MboII	GAAGA	6 cut(s)	132, 326, 412, 415, 439, 450
MhlI	GDGCHC	1 cut(s)	169
MluCI	AATT	3 cut(s)	35, 272, 327
MlyI	GAGTC	1 cut(s)	4
MnlI	CCTC	7 cut(s)	14, 73, 342, 390, 399, 455, 472
MseI	TTAA	2 cut(s)	143, 498
MspA1I	CMGCKG	1 cut(s)	386
MspI	CCGG	1 cut(s)	115
MspR9I	CCNGG	3 cut(s)	115, 163, 175
MvaI	CCWGG	2 cut(s)	163, 175
MwoI	GCNNNNNNNGC	2 cut(s)	227, 389
NciI	CCSGG	1 cut(s)	115
NlaIII	CATG	3 cut(s)	79, 103, 396
NsbI	TGCGCA	1 cut(s)	222
NspV	TTCGAA	1 cut(s)	308
PagI	TCATGA	1 cut(s)	99
PasI	CCCWGGG	1 cut(s)	162
PceI	AGGCCT	1 cut(s)	90
PfoI	TCCNGGA	1 cut(s)	113
PkrI	GCNGC	4 cut(s)	74, 385, 388, 391
PleI	GAGTC	1 cut(s)	4
PpsI	GAGTC	1 cut(s)	4
Ppu21I	YACGTR	1 cut(s)	209
Psp6I	CCWGG	2 cut(s)	161, 173
PspGI	CCWGG	2 cut(s)	161, 173
PspPI	GGNCC	1 cut(s)	4
PstI	CTGCAG	1 cut(s)	391
PvuII	CAGCTG	1 cut(s)	386
RsaI	GTAC	3 cut(s)	207, 288, 493
RsaNI	GTAC	3 cut(s)	206, 287, 492
SaqAI	TTAA	2 cut(s)	143, 498
SatI	GCNGC	4 cut(s)	73, 384, 387, 390
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	1 cut(s)	4
ScrFI	CCNGG	3 cut(s)	115, 163, 175
SduI	GDGCHC	1 cut(s)	169
SetI	ASST	6 cut(s)	84, 202, 211, 292, 388, 410
SfcI	CTRYAG	1 cut(s)	387
SfuI	TTCGAA	1 cut(s)	308
SnaBI	TACGTA	1 cut(s)	209
Sse9I	AATT	3 cut(s)	35, 272, 327
SseBI	AGGCCT	1 cut(s)	90
SsiI	CCGC	4 cut(s)	73, 149, 183, 435
StuI	AGGCCT	1 cut(s)	90
StyD4I	CCNGG	3 cut(s)	113, 161, 173
TaaI	ACNGT	1 cut(s)	134
TaiI	ACGT	1 cut(s)	211
TaqI	TCGA	1 cut(s)	308
TasI	AATT	3 cut(s)	35, 272, 327
TatI	WGTACW	1 cut(s)	491
TauI	GCSGC	1 cut(s)	75
Tru1I	TTAA	2 cut(s)	143, 498
Tru9I	TTAA	2 cut(s)	143, 498
TscAI	CASTG	2 cut(s)	31, 327
TseI	GCWGC	3 cut(s)	383, 386, 389
TspDTI	ATGAA	1 cut(s)	116
TspGWI	ACGGA	1 cut(s)	77
TspRI	CASTG	2 cut(s)	31, 327
XagI	CCTNNNNNAGG	1 cut(s)	18
XapI	RAATTY	2 cut(s)	35, 272
XcmI	CCANNNNNNNNNTGG	2 cut(s)	14, 370

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.