RchiOBHm_Chr1g0337381

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0024729
Physical Location & Seq
Forward (+)
29116914 .. 29126726
9813 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 330 bp
ATGATTGTCCACCAAGCTGGGAGTATGGGTTTTACTATTGAATATGATTCTAGTCCCCTGGTGGAGTTGGTCTCGAAACTTATAAGCGAGTCTCACCCTCTATATACCTTAATCAATGGCTGCAGGTCCCTGTTGTCTGCTGATTGGAATTGTCAATTGGTTCATGTTTATCAAGAGCCCCATATTCTTCAAGATCCCCATTGTCTATCCCAGGGTTACTTGCTGCTGCTTCTGCTGGTGCCTCCCAAGTGTGGAGATTTATTTTTATTTTTAATTTGTTGTGTTTGGGTCTTTTACCCTCTTTGTATCAAGAAAGAAAAATTGAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MATH RVT_3 zf-RVT

Protein Analysis

109

Amino Acids

12.45

Weight (kDa)

6.15

Isoelectric Point (pI)

49.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024729)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0337381
rosa_samantha Rh1BG123300 Rh1CG144800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 83
Acc36I ACCTGC 1 cut(s) 114
AccB1I GGYRCC 1 cut(s) 238
AclWI GGATC 1 cut(s) 188
AfiI CCNNNNNNNGG 1 cut(s) 251
AgsI TTSAA 2 cut(s) 41, 191
AjnI CCWGG 2 cut(s) 57, 210
AjuI GAANNNNNNNTTGG 2 cut(s) 140, 172
AluBI AGCT 1 cut(s) 17
AluI AGCT 1 cut(s) 17
Alw26I GTCTC 2 cut(s) 76, 96
AlwI GGATC 1 cut(s) 188
ApeKI GCWGC 3 cut(s) 120, 223, 226
AspS9I GGNCC 1 cut(s) 126
AsuHPI GGTGA 1 cut(s) 86
AvaII GGWCC 1 cut(s) 126
BanI GGYRCC 1 cut(s) 238
BanII GRGCYC 1 cut(s) 180
BbvI GCAGC 3 cut(s) 107, 210, 213
BciT130I CCWGG 2 cut(s) 59, 212
BcoDI GTCTC 2 cut(s) 76, 96
BfaI CTAG 1 cut(s) 51
BfmI CTRYAG 1 cut(s) 121
BfuAI ACCTGC 1 cut(s) 114
BisI GCNGC 3 cut(s) 121, 224, 227
BlsI GCNGC 3 cut(s) 122, 225, 228
Bme1390I CCNGG 2 cut(s) 59, 212
Bme18I GGWCC 1 cut(s) 126
BmgT120I GGNCC 1 cut(s) 126
BmiI GGNNCC 2 cut(s) 128, 240
BmrFI CCNGG 2 cut(s) 59, 212
BplI GAGNNNNNCTC 2 cut(s) 56, 88
BsaI GGTCTC 1 cut(s) 76
BsaJI CCNNGG 3 cut(s) 57, 210, 211
BsaXI ACNNNNNCTCC 2 cut(s) 13, 43
Bsc4I CCNNNNNNNGG 1 cut(s) 251
BseBI CCWGG 2 cut(s) 59, 212
BseDI CCNNGG 3 cut(s) 57, 210, 211
BseLI CCNNNNNNNGG 1 cut(s) 251
BseXI GCAGC 3 cut(s) 107, 210, 213
BseYI CCCAGC 1 cut(s) 17
BshNI GGYRCC 1 cut(s) 238
BslFI GGGAC 2 cut(s) 39, 112
BslI CCNNNNNNNGG 1 cut(s) 251
BsmAI GTCTC 2 cut(s) 76, 96
BsmFI GGGAC 2 cut(s) 39, 112
Bso31I GGTCTC 1 cut(s) 76
Bsp1286I GDGCHC 1 cut(s) 180
Bsp143I GATC 1 cut(s) 193
BspLI GGNNCC 2 cut(s) 128, 240
BspMAI CTGCAG 1 cut(s) 125
BspMI ACCTGC 1 cut(s) 114
BspPI GGATC 1 cut(s) 188
BspT107I GGYRCC 1 cut(s) 238
BspTNI GGTCTC 1 cut(s) 76
BssECI CCNNGG 3 cut(s) 57, 210, 211
BssMI GATC 1 cut(s) 193
Bst2UI CCWGG 2 cut(s) 59, 212
BstKTI GATC 1 cut(s) 196
BstMAI GTCTC 2 cut(s) 76, 96
BstMBI GATC 1 cut(s) 193
BstMWI GCNNNNNNNGC 1 cut(s) 232
BstNI CCWGG 2 cut(s) 59, 212
BstSCI CCNGG 2 cut(s) 57, 210
BstSFI CTRYAG 1 cut(s) 121
BstV1I GCAGC 3 cut(s) 107, 210, 213
BstX2I RGATCY 1 cut(s) 193
BstXI CCANNNNNNTGG 1 cut(s) 17
BstYI RGATCY 1 cut(s) 193
BveI ACCTGC 1 cut(s) 114
Cfr13I GGNCC 1 cut(s) 126
CviAII CATG 1 cut(s) 164
CviJI RGCY 3 cut(s) 17, 120, 178
CviKI_1 RGCY 3 cut(s) 17, 120, 178
DpnI GATC 1 cut(s) 195
DpnII GATC 1 cut(s) 193
Eco24I GRGCYC 1 cut(s) 180
Eco31I GGTCTC 1 cut(s) 76
Eco47I GGWCC 1 cut(s) 126
EcoO109I RGGNCCY 1 cut(s) 126
EcoRII CCWGG 2 cut(s) 57, 210
EcoT38I GRGCYC 1 cut(s) 180
FaeI CATG 1 cut(s) 167
FaiI YATR 7 cut(s) 26, 45, 83, 103, 105, 165, 183
FaqI GGGAC 2 cut(s) 39, 112
FatI CATG 1 cut(s) 163
Fnu4HI GCNGC 3 cut(s) 121, 224, 227
FriOI GRGCYC 1 cut(s) 180
Fsp4HI GCNGC 3 cut(s) 121, 224, 227
FspBI CTAG 1 cut(s) 51
GluI GCNGC 3 cut(s) 121, 224, 227
GsaI CCCAGC 1 cut(s) 21
Hin1II CATG 1 cut(s) 167
HinfI GANTC 2 cut(s) 47, 89
HphI GGTGA 1 cut(s) 86
Hpy166II GTNNAC 1 cut(s) 10
Hpy188III TCNNGA 4 cut(s) 73, 173, 191, 310
Hpy8I GTNNAC 1 cut(s) 10
HpyCH4V TGCA 1 cut(s) 123
HpyF10VI GCNNNNNNNGC 1 cut(s) 232
Hsp92II CATG 1 cut(s) 167
Kzo9I GATC 1 cut(s) 193
LpnPI CCDG 8 cut(s) 3, 44, 71, 109, 143, 197, 221, 224
Lsp1109I GCAGC 3 cut(s) 107, 210, 213
MaeI CTAG 1 cut(s) 51
MaeIII GTNAC 1 cut(s) 215
MalI GATC 1 cut(s) 195
MboI GATC 1 cut(s) 193
MboII GAAGA 1 cut(s) 179
MfeI CAATTG 1 cut(s) 155
MflI RGATCY 1 cut(s) 193
MhlI GDGCHC 1 cut(s) 180
MluCI AATT 4 cut(s) 148, 155, 273, 320
MlyI GAGTC 1 cut(s) 98
MnlI CCTC 4 cut(s) 108, 252, 309, 318
MseI TTAA 2 cut(s) 110, 272
MspR9I CCNGG 2 cut(s) 59, 212
MunI CAATTG 1 cut(s) 155
MvaI CCWGG 2 cut(s) 59, 212
MwoI GCNNNNNNNGC 1 cut(s) 232
NdeII GATC 1 cut(s) 193
NlaIII CATG 1 cut(s) 167
NlaIV GGNNCC 2 cut(s) 128, 240
PasI CCCWGGG 1 cut(s) 211
PfeI GAWTC 1 cut(s) 47
PkrI GCNGC 3 cut(s) 122, 225, 228
PleI GAGTC 1 cut(s) 97
PpsI GAGTC 1 cut(s) 97
PpuMI RGGWCCY 1 cut(s) 126
PsiI TTATAA 1 cut(s) 83
Psp5II RGGWCCY 1 cut(s) 126
Psp6I CCWGG 2 cut(s) 57, 210
PspFI CCCAGC 1 cut(s) 17
PspGI CCWGG 2 cut(s) 57, 210
PspN4I GGNNCC 2 cut(s) 128, 240
PspPI GGNCC 1 cut(s) 126
PspPPI RGGWCCY 1 cut(s) 126
PstI CTGCAG 1 cut(s) 125
PsuI RGATCY 1 cut(s) 193
SaqAI TTAA 2 cut(s) 110, 272
SatI GCNGC 3 cut(s) 121, 224, 227
Sau3AI GATC 1 cut(s) 193
Sau96I GGNCC 1 cut(s) 126
SchI GAGTC 1 cut(s) 98
ScrFI CCNGG 2 cut(s) 59, 212
SduI GDGCHC 1 cut(s) 180
SetI ASST 4 cut(s) 19, 110, 128, 329
SfcI CTRYAG 1 cut(s) 121
SinI GGWCC 1 cut(s) 126
Sse9I AATT 4 cut(s) 148, 155, 273, 320
SspMI CTAG 1 cut(s) 51
StyD4I CCNGG 2 cut(s) 57, 210
TaqI TCGA 1 cut(s) 74
TasI AATT 4 cut(s) 148, 155, 273, 320
TfiI GAWTC 1 cut(s) 47
Tru1I TTAA 2 cut(s) 110, 272
Tru9I TTAA 2 cut(s) 110, 272
TseI GCWGC 3 cut(s) 120, 223, 226
TspDTI ATGAA 1 cut(s) 152
VpaK11BI GGWCC 1 cut(s) 126
XspI CTAG 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.