Rh1CG144800

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
Physical Location & Seq
Forward (+)
31239445 .. 31246121
6677 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG144800.1

Sequence Viewer

Length: 306 bp
ATGGGAAGCTGGATTTATATGTTGCTGCCACCAGAAAGAACCCCCAAAGGGAGAAAATTAGGCAGAAAATATGGTGCTGTTGAAATCAGAGCAGGGCGACTCGTGAAGGTTTTGGTGGGTGATTCAGTAACCTGTTTGATAAAAGCCATCTTAAGATGTGTCTTAAGAACAGGCGCTCCATTCAGAACTCTGCAAACAATGGAGTTTTATATAATCAAAGATGTGTCGGACTCACCAAATAGTGAAAGTGGGTTTATCCGTGGCTCTATGTTGGACTCTCCCACAACAAATCATTGGGGTGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

101

Amino Acids

11.21

Weight (kDa)

9.93

Isoelectric Point (pI)

45.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0024729)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0337381
rosa_samantha Rh1BG123300 Rh1CG144800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 48
AflII CTTAAG 2 cut(s) 151, 163
AgsI TTSAA 1 cut(s) 83
AloI GAACNNNNNNTCC 2 cut(s) 160, 192
AluBI AGCT 1 cut(s) 9
AluI AGCT 1 cut(s) 9
ApeKI GCWGC 1 cut(s) 25
AspLEI GCGC 1 cut(s) 176
AsuHPI GGTGA 2 cut(s) 131, 225
BauI CACGAG 1 cut(s) 101
BbvI GCAGC 1 cut(s) 12
BccI CCATC 1 cut(s) 155
BfoI RGCGCY 1 cut(s) 177
BfrI CTTAAG 2 cut(s) 151, 163
BisI GCNGC 1 cut(s) 26
BlsI GCNGC 1 cut(s) 27
BsaJI CCNNGG 1 cut(s) 259
BsaXI ACNNNNNCTCC 2 cut(s) 160, 190
Bsc4I CCNNNNNNNGG 1 cut(s) 48
BseDI CCNNGG 1 cut(s) 259
BseLI CCNNNNNNNGG 1 cut(s) 48
BseXI GCAGC 1 cut(s) 12
BslI CCNNNNNNNGG 1 cut(s) 48
BspTI CTTAAG 2 cut(s) 151, 163
BssECI CCNNGG 1 cut(s) 259
BssSI CACGAG 1 cut(s) 101
Bst2BI CACGAG 1 cut(s) 101
BstAFI CTTAAG 2 cut(s) 151, 163
BstDSI CCRYGG 1 cut(s) 259
BstH2I RGCGCY 1 cut(s) 177
BstHHI GCGC 1 cut(s) 176
BstV1I GCAGC 1 cut(s) 12
BtgI CCRYGG 1 cut(s) 259
CfoI GCGC 1 cut(s) 176
CviJI RGCY 4 cut(s) 9, 146, 264, 303
CviKI_1 RGCY 4 cut(s) 9, 146, 264, 303
FaiI YATR 6 cut(s) 18, 20, 72, 210, 212, 269
Fnu4HI GCNGC 1 cut(s) 26
Fsp4HI GCNGC 1 cut(s) 26
GlaI GCGC 1 cut(s) 175
GluI GCNGC 1 cut(s) 26
HaeII RGCGCY 1 cut(s) 177
HhaI GCGC 1 cut(s) 176
Hin6I GCGC 1 cut(s) 174
HinP1I GCGC 1 cut(s) 174
HinfI GANTC 4 cut(s) 99, 122, 230, 275
HphI GGTGA 2 cut(s) 131, 225
Hpy188I TCNGA 3 cut(s) 89, 185, 229
Hpy188III TCNNGA 1 cut(s) 103
HpyAV CCTTC 1 cut(s) 100
HpyCH4V TGCA 1 cut(s) 193
HspAI GCGC 1 cut(s) 174
LmnI GCTCC 1 cut(s) 181
LpnPI CCDG 4 cut(s) 45, 78, 145, 156
Lsp1109I GCAGC 1 cut(s) 12
MaeIII GTNAC 1 cut(s) 127
MluCI AATT 1 cut(s) 56
MlyI GAGTC 3 cut(s) 93, 224, 269
MmeI TCCRAC 2 cut(s) 207, 252
MseI TTAA 2 cut(s) 152, 164
MslI CAYNNNNRTG 1 cut(s) 297
MspCI CTTAAG 2 cut(s) 151, 163
PfeI GAWTC 1 cut(s) 122
PkrI GCNGC 1 cut(s) 27
PleI GAGTC 3 cut(s) 93, 224, 269
PpsI GAGTC 3 cut(s) 93, 224, 269
RseI CAYNNNNRTG 1 cut(s) 297
SaqAI TTAA 2 cut(s) 152, 164
SatI GCNGC 1 cut(s) 26
SchI GAGTC 3 cut(s) 93, 224, 269
SetI ASST 3 cut(s) 11, 111, 134
SgeI CNNG 8 cut(s) 22, 44, 105, 113, 115, 144, 183, 272
SmiMI CAYNNNNRTG 1 cut(s) 297
SmlI CTYRAG 2 cut(s) 151, 163
SmoI CTYRAG 2 cut(s) 151, 163
Sse9I AATT 1 cut(s) 56
TasI AATT 1 cut(s) 56
TfiI GAWTC 1 cut(s) 122
Tru1I TTAA 2 cut(s) 152, 164
Tru9I TTAA 2 cut(s) 152, 164
TseI GCWGC 1 cut(s) 25
TspGWI ACGGA 1 cut(s) 248
Vha464I CTTAAG 2 cut(s) 151, 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.