Rh1BG123300

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
Physical Location & Seq
Forward (+)
20819432 .. 20820561
1130 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG123300.1

Sequence Viewer

Length: 312 bp
ATGCGAAGCTGGATTTATGTGGTGCTGCCACCAGAAAGAACCCCCAAAGGGTCCCTGTTGTCTGCTGATTGGAATTGTCACTTGGTTCATGTTTATCAAGAGCCCCATATTCTTCAGGATCCCCATTGTCTATCCCAGGGTTACTTGCTGGTGCTTCTGCTGGTGCCTCCCAAGTGTAGAGATTTATTTTTATTTTTAATTTGTTGTGTTTGGGTCTTTTACCCTCTTTGTACCAAGAAACAAAAAAGTGAGGTAAATCCTACTGACCAAGTCTTGTTTAATTTATTATTGAAACATTCCAATCATTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

103

Amino Acids

12.04

Weight (kDa)

8.19

Isoelectric Point (pI)

50.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0024729)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0337381
rosa_samantha Rh1BG123300 Rh1CG144800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 163
AclWI GGATC 2 cut(s) 113, 126
AcuI CTGAAG 1 cut(s) 98
AfaI GTAC 1 cut(s) 232
AfiI CCNNNNNNNGG 1 cut(s) 48
AgsI TTSAA 1 cut(s) 292
AjnI CCWGG 1 cut(s) 135
AjuI GAANNNNNNNTTGG 2 cut(s) 65, 97
AluBI AGCT 1 cut(s) 9
AluI AGCT 1 cut(s) 9
AlwI GGATC 2 cut(s) 113, 126
ApeKI GCWGC 1 cut(s) 25
AspS9I GGNCC 1 cut(s) 51
AvaII GGWCC 1 cut(s) 51
BamHI GGATCC 1 cut(s) 118
BanI GGYRCC 1 cut(s) 163
BanII GRGCYC 1 cut(s) 105
BbvI GCAGC 1 cut(s) 12
BciT130I CCWGG 1 cut(s) 137
BisI GCNGC 1 cut(s) 26
BlsI GCNGC 1 cut(s) 27
Bme1390I CCNGG 1 cut(s) 137
Bme18I GGWCC 1 cut(s) 51
BmgT120I GGNCC 1 cut(s) 51
BmiI GGNNCC 4 cut(s) 52, 53, 120, 165
BmrFI CCNGG 1 cut(s) 137
BsaJI CCNNGG 2 cut(s) 135, 136
Bsc4I CCNNNNNNNGG 1 cut(s) 48
BseBI CCWGG 1 cut(s) 137
BseDI CCNNGG 2 cut(s) 135, 136
BseLI CCNNNNNNNGG 1 cut(s) 48
BseXI GCAGC 1 cut(s) 12
BshNI GGYRCC 1 cut(s) 163
BslFI GGGAC 1 cut(s) 37
BslI CCNNNNNNNGG 1 cut(s) 48
BsmFI GGGAC 1 cut(s) 37
Bsp1286I GDGCHC 1 cut(s) 105
Bsp143I GATC 1 cut(s) 118
BspLI GGNNCC 4 cut(s) 52, 53, 120, 165
BspPI GGATC 2 cut(s) 113, 126
BspT107I GGYRCC 1 cut(s) 163
BssECI CCNNGG 2 cut(s) 135, 136
BssMI GATC 1 cut(s) 118
Bst2UI CCWGG 1 cut(s) 137
BstKTI GATC 1 cut(s) 121
BstMBI GATC 1 cut(s) 118
BstNI CCWGG 1 cut(s) 137
BstSCI CCNGG 1 cut(s) 135
BstV1I GCAGC 1 cut(s) 12
BstX2I RGATCY 1 cut(s) 118
BstYI RGATCY 1 cut(s) 118
Cfr13I GGNCC 1 cut(s) 51
Csp6I GTAC 1 cut(s) 231
CviAII CATG 1 cut(s) 89
CviJI RGCY 2 cut(s) 9, 103
CviKI_1 RGCY 2 cut(s) 9, 103
CviQI GTAC 1 cut(s) 231
DpnI GATC 1 cut(s) 120
DpnII GATC 1 cut(s) 118
Eco24I GRGCYC 1 cut(s) 105
Eco47I GGWCC 1 cut(s) 51
Eco57I CTGAAG 1 cut(s) 98
EcoO109I RGGNCCY 1 cut(s) 51
EcoRII CCWGG 1 cut(s) 135
EcoT38I GRGCYC 1 cut(s) 105
FaeI CATG 1 cut(s) 92
FaiI YATR 3 cut(s) 18, 90, 108
FaqI GGGAC 1 cut(s) 37
FatI CATG 1 cut(s) 88
Fnu4HI GCNGC 1 cut(s) 26
FriOI GRGCYC 1 cut(s) 105
Fsp4HI GCNGC 1 cut(s) 26
GluI GCNGC 1 cut(s) 26
Hin1II CATG 1 cut(s) 92
Hpy188III TCNNGA 2 cut(s) 98, 116
Hsp92II CATG 1 cut(s) 92
KflI GGGWCCC 1 cut(s) 51
Kzo9I GATC 1 cut(s) 118
LpnPI CCDG 7 cut(s) 45, 68, 101, 122, 134, 146, 149
Lsp1109I GCAGC 1 cut(s) 12
MaeIII GTNAC 2 cut(s) 77, 140
MalI GATC 1 cut(s) 120
MboI GATC 1 cut(s) 118
MboII GAAGA 1 cut(s) 104
MflI RGATCY 1 cut(s) 118
MhlI GDGCHC 1 cut(s) 105
MluCI AATT 3 cut(s) 73, 198, 280
MnlI CCTC 3 cut(s) 177, 234, 244
MseI TTAA 3 cut(s) 197, 279, 310
MspR9I CCNGG 1 cut(s) 137
MvaI CCWGG 1 cut(s) 137
NdeII GATC 1 cut(s) 118
NlaIII CATG 1 cut(s) 92
NlaIV GGNNCC 4 cut(s) 52, 53, 120, 165
NmuCI GTSAC 1 cut(s) 77
PasI CCCWGGG 1 cut(s) 136
PflFI GACNNNGTC 1 cut(s) 269
PkrI GCNGC 1 cut(s) 27
PpuMI RGGWCCY 1 cut(s) 51
Psp5II RGGWCCY 1 cut(s) 51
Psp6I CCWGG 1 cut(s) 135
PspGI CCWGG 1 cut(s) 135
PspN4I GGNNCC 4 cut(s) 52, 53, 120, 165
PspPI GGNCC 1 cut(s) 51
PspPPI RGGWCCY 1 cut(s) 51
PsuI RGATCY 1 cut(s) 118
PsyI GACNNNGTC 1 cut(s) 269
RsaI GTAC 1 cut(s) 232
RsaNI GTAC 1 cut(s) 231
SaqAI TTAA 3 cut(s) 197, 279, 310
SatI GCNGC 1 cut(s) 26
Sau3AI GATC 1 cut(s) 118
Sau96I GGNCC 1 cut(s) 51
ScrFI CCNGG 1 cut(s) 137
SduI GDGCHC 1 cut(s) 105
SetI ASST 2 cut(s) 11, 255
SinI GGWCC 1 cut(s) 51
Sse9I AATT 3 cut(s) 73, 198, 280
StyD4I CCNGG 1 cut(s) 135
TasI AATT 3 cut(s) 73, 198, 280
Tru1I TTAA 3 cut(s) 197, 279, 310
Tru9I TTAA 3 cut(s) 197, 279, 310
TseFI GTSAC 1 cut(s) 77
TseI GCWGC 1 cut(s) 25
Tsp45I GTSAC 1 cut(s) 77
TspDTI ATGAA 1 cut(s) 77
Tth111I GACNNNGTC 1 cut(s) 269
VpaK11BI GGWCC 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.