Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0022584

Physical Location & Seq

Genomic Coordinates Reverse (-)

31438095 .. 31438904

Gene Structure 810 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGTGCTGCGCCATCAAGACGGCAAGGTCTGCATCAAGTTCAAAGACTCTGACGCTGAGTTGCTCATCCCGAGCTTTGTCAATCCCTTGCCAGCTGCTAAAGTCCTACCTGGCAGGGTATTCGTGAAGGAGGAAGCGGAATCATTTCTCAACATAATAAAAAAGTTTAGAGATACCAAGGGTATTTTAGTGAACACGTTCACAAACCTAGAATCGCATGCCCCTCATGCTCATTCATCTGATGCCGAGATCCCTCCCGTATATTCCGTAGGACCCCAAACAGTGATGAAAGTCGTGTGGATTCCGATGAGGCCAAGCAGAATGTTCTTGTGCTTTGGAAGCATGGGAAGCTTTGACAAGGACCAGGTGAAAGAGAACGCCCACGCCCAAGACCACGCGACGCATAGATTCTTATGGTCCTTACGCCGGCCTCCACCCATAGGAAGAATTCCTTCACCCATAGGAAGAATTACTTTTCCAAGTGACTACGATGACCACATAGAAGTCTTGCCTAAAGGGTTCCTCGATCAAACATTTGGGATTGGAAACGTCATAGGTTGGGCCCCACAAGTTGCCGTCTCAGCTCACCCATTTGTGGGAGGATTTGTATTCCATTGTGGCTGGAATTCCACGCTTGAGAGTCTTAGGCACGGTGTGCCGGTTGCCCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008194 GO:0008300 GO:0009056 GO:0009628 GO:0009651 GO:0009687 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016042 GO:0016054 GO:0016107 GO:0016115 GO:0016740 GO:0016757 GO:0016758 GO:0019752 GO:0032787 GO:0033993 GO:0035251 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043290 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046164 GO:0046345 GO:0046395 GO:0046527 GO:0050896 GO:0071704 GO:0072329 GO:0080043 GO:0080044 GO:0080046 GO:0097305 GO:1901575 GO:1901615 GO:1901616 GO:1901700 GO:1902644

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

223

Amino Acids

24.8

Weight (kDa)

8.46

Isoelectric Point (pI)

48.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPGT	PF00201	110 - 222	4.8e-10	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022584)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0339961
rosa_multiflora	Rmu_co8066380.1_g000001 Rmu_sc0000234.1_g000013
rosa_rugosa	Rorug01G0138200.1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	26
AccII	CGCG	1 cut(s)	398
AciI	CCGC	1 cut(s)	137
AclWI	GGATC	1 cut(s)	244
AcsI	RAATTY	2 cut(s)	447, 625
AdeI	CACNNNGTG	1 cut(s)	655
AfiI	CCNNNNNNNGG	4 cut(s)	426, 440, 595, 596
AflIII	ACRYGT	1 cut(s)	195
AgsI	TTSAA	1 cut(s)	43
AjnI	CCWGG	2 cut(s)	109, 363
AluBI	AGCT	4 cut(s)	75, 95, 351, 584
AluI	AGCT	4 cut(s)	75, 95, 351, 584
Alw26I	GTCTC	1 cut(s)	583
AlwI	GGATC	1 cut(s)	244
Ama87I	CYCGRG	1 cut(s)	70
AoxI	GGCC	3 cut(s)	311, 428, 561
ApaI	GGGCCC	1 cut(s)	565
ApeKI	GCWGC	2 cut(s)	7, 95
ApoI	RAATTY	2 cut(s)	447, 625
Asp700I	GAANNNNTTC	3 cut(s)	144, 197, 451
AspLEI	GCGC	1 cut(s)	12
AspS9I	GGNCC	5 cut(s)	272, 361, 417, 561, 562
AsuHPI	GGTGA	3 cut(s)	379, 447, 578
AvaI	CYCGRG	1 cut(s)	70
AvaII	GGWCC	3 cut(s)	272, 361, 417
BaeGI	GKGCMC	1 cut(s)	565
BanII	GRGCYC	1 cut(s)	565
BbvI	GCAGC	1 cut(s)	82
BccI	CCATC	1 cut(s)	21
BceAI	ACGGC	2 cut(s)	37, 560
BcgI	CGANNNNNNTGC	2 cut(s)	103, 137
BciT130I	CCWGG	2 cut(s)	111, 365
BcoDI	GTCTC	1 cut(s)	583
BfaI	CTAG	1 cut(s)	209
BisI	GCNGC	2 cut(s)	8, 96
BlsI	GCNGC	2 cut(s)	9, 97
Bme1390I	CCNGG	2 cut(s)	111, 365
Bme18I	GGWCC	3 cut(s)	272, 361, 417
BmeT110I	CYCGRG	1 cut(s)	70
BmgT120I	GGNCC	5 cut(s)	272, 361, 417, 561, 562
BmiI	GGNNCC	4 cut(s)	274, 521, 563, 564
BmrFI	CCNGG	2 cut(s)	111, 365
BmsI	GCATC	2 cut(s)	42, 232
BpuEI	CTTGAG	1 cut(s)	656
BsaJI	CCNNGG	1 cut(s)	177
BsaXI	ACNNNNNCTCC	2 cut(s)	591, 621
Bsc4I	CCNNNNNNNGG	4 cut(s)	426, 440, 595, 596
Bse118I	RCCGGY	2 cut(s)	426, 658
BseBI	CCWGG	2 cut(s)	111, 365
BseDI	CCNNGG	1 cut(s)	177
BseGI	GGATG	1 cut(s)	66
BseLI	CCNNNNNNNGG	4 cut(s)	426, 440, 595, 596
BseMII	CTCAG	2 cut(s)	48, 594
BseSI	GKGCMC	1 cut(s)	565
BseXI	GCAGC	1 cut(s)	82
Bsh1236I	CGCG	1 cut(s)	398
BshFI	GGCC	3 cut(s)	313, 430, 563
BsiHKCI	CYCGRG	1 cut(s)	70
BsiSI	CCGG	2 cut(s)	427, 659
BslI	CCNNNNNNNGG	4 cut(s)	426, 440, 595, 596
BsmAI	GTCTC	1 cut(s)	583
BsmBI	CGTCTC	1 cut(s)	583
BsnI	GGCC	3 cut(s)	313, 430, 563
BsoBI	CYCGRG	1 cut(s)	70
Bsp120I	GGGCCC	1 cut(s)	561
Bsp1286I	GDGCHC	1 cut(s)	565
Bsp143I	GATC	2 cut(s)	249, 526
BspACI	CCGC	1 cut(s)	137
BspANI	GGCC	3 cut(s)	313, 430, 563
BspCNI	CTCAG	2 cut(s)	49, 593
BspFNI	CGCG	1 cut(s)	398
BspLI	GGNNCC	4 cut(s)	274, 521, 563, 564
BspPI	GGATC	1 cut(s)	244
BsrFI	RCCGGY	2 cut(s)	426, 658
BssAI	RCCGGY	2 cut(s)	426, 658
BssECI	CCNNGG	1 cut(s)	177
BssMI	GATC	2 cut(s)	249, 526
BssT1I	CCWWGG	1 cut(s)	177
Bst2UI	CCWGG	2 cut(s)	111, 365
Bst4CI	ACNGT	2 cut(s)	283, 653
BstAPI	GCANNNNNTGC	2 cut(s)	30, 655
BstC8I	GCNNGC	3 cut(s)	93, 219, 428
BstDEI	CTNAG	3 cut(s)	57, 580, 644
BstF5I	GGATG	1 cut(s)	66
BstFNI	CGCG	1 cut(s)	398
BstHHI	GCGC	1 cut(s)	12
BstKTI	GATC	2 cut(s)	252, 529
BstMAI	GTCTC	1 cut(s)	583
BstMBI	GATC	2 cut(s)	249, 526
BstMWI	GCNNNNNNNGC	6 cut(s)	30, 227, 339, 348, 581, 655
BstNI	CCWGG	2 cut(s)	111, 365
BstNSI	RCATGY	1 cut(s)	221
BstSCI	CCNGG	2 cut(s)	109, 363
BstSLI	GKGCMC	1 cut(s)	565
BstUI	CGCG	1 cut(s)	398
BstV1I	GCAGC	1 cut(s)	82
BstX2I	RGATCY	1 cut(s)	249
BstYI	RGATCY	1 cut(s)	249
BsuRI	GGCC	3 cut(s)	313, 430, 563
BtsCI	GGATG	1 cut(s)	66
BtsIMutI	CAGTG	1 cut(s)	288
Cac8I	GCNNGC	3 cut(s)	93, 219, 428
CfoI	GCGC	1 cut(s)	12
Cfr10I	RCCGGY	2 cut(s)	426, 658
Cfr13I	GGNCC	5 cut(s)	272, 361, 417, 561, 562
CseI	GACGC	2 cut(s)	62, 409
CsiI	ACCWGGT	1 cut(s)	363
CviAII	CATG	3 cut(s)	218, 227, 343
CviJI	RGCY	8 cut(s)	75, 95, 313, 351, 430, 563, 584, 621
CviKI_1	RGCY	8 cut(s)	75, 95, 313, 351, 430, 563, 584, 621
DdeI	CTNAG	3 cut(s)	57, 580, 644
DpnI	GATC	2 cut(s)	251, 528
DpnII	GATC	2 cut(s)	249, 526
DraIII	CACNNNGTG	1 cut(s)	655
DrdI	GACNNNNNNGTC	1 cut(s)	26
DseDI	GACNNNNNNGTC	1 cut(s)	26
Eco130I	CCWWGG	1 cut(s)	177
Eco24I	GRGCYC	1 cut(s)	565
Eco47I	GGWCC	3 cut(s)	272, 361, 417
Eco88I	CYCGRG	1 cut(s)	70
EcoO109I	RGGNCCY	2 cut(s)	272, 562
EcoRI	GAATTC	2 cut(s)	447, 625
EcoRII	CCWGG	2 cut(s)	109, 363
EcoT14I	CCWWGG	1 cut(s)	177
EcoT38I	GRGCYC	1 cut(s)	565
ErhI	CCWWGG	1 cut(s)	177
Esp3I	CGTCTC	1 cut(s)	583
FaeI	CATG	3 cut(s)	221, 230, 346
FalI	AAGNNNNNCTT	4 cut(s)	436, 468, 457, 489
FatI	CATG	3 cut(s)	217, 226, 342
Fnu4HI	GCNGC	2 cut(s)	8, 96
FokI	GGATG	1 cut(s)	53
FriOI	GRGCYC	1 cut(s)	565
Fsp4HI	GCNGC	2 cut(s)	8, 96
FspBI	CTAG	1 cut(s)	209
GlaI	GCGC	1 cut(s)	11
GluI	GCNGC	2 cut(s)	8, 96
HaeIII	GGCC	3 cut(s)	313, 430, 563
HapII	CCGG	2 cut(s)	427, 659
HgaI	GACGC	2 cut(s)	62, 409
HhaI	GCGC	1 cut(s)	12
Hin1II	CATG	3 cut(s)	221, 230, 346
Hin6I	GCGC	1 cut(s)	10
HinP1I	GCGC	1 cut(s)	10
HindIII	AAGCTT	1 cut(s)	349
HinfI	GANTC	6 cut(s)	47, 140, 212, 301, 408, 640
HpaII	CCGG	2 cut(s)	427, 659
HphI	GGTGA	3 cut(s)	379, 447, 578
Hpy166II	GTNNAC	2 cut(s)	193, 201
Hpy188I	TCNGA	3 cut(s)	52, 241, 306
Hpy188III	TCNNGA	3 cut(s)	17, 70, 124
Hpy8I	GTNNAC	2 cut(s)	193, 201
Hpy99I	CGWCG	1 cut(s)	403
HpyAV	CCTTC	2 cut(s)	121, 462
HpyCH4III	ACNGT	2 cut(s)	283, 653
HpyCH4IV	ACGT	2 cut(s)	197, 549
HpyCH4V	TGCA	1 cut(s)	33
HpyF10VI	GCNNNNNNNGC	6 cut(s)	30, 227, 339, 348, 581, 655
HpyF3I	CTNAG	3 cut(s)	57, 580, 644
HpySE526I	ACGT	2 cut(s)	197, 549
Hsp92II	CATG	3 cut(s)	221, 230, 346
HspAI	GCGC	1 cut(s)	10
KroI	GCCGGC	1 cut(s)	426
KroNI	GCCGGC	1 cut(s)	428
Kzo9I	GATC	2 cut(s)	249, 526
LpnPI	CCDG	8 cut(s)	96, 100, 105, 123, 350, 377, 440, 607
Lsp1109I	GCAGC	1 cut(s)	82
LweI	GCATC	2 cut(s)	42, 232
MabI	ACCWGGT	1 cut(s)	363
MaeI	CTAG	1 cut(s)	209
MaeII	ACGT	2 cut(s)	197, 549
MaeIII	GTNAC	1 cut(s)	482
MalI	GATC	2 cut(s)	251, 528
MboI	GATC	2 cut(s)	249, 526
MboII	GAAGA	2 cut(s)	456, 477
MflI	RGATCY	1 cut(s)	249
MhlI	GDGCHC	1 cut(s)	565
MluCI	AATT	3 cut(s)	447, 468, 625
MlyI	GAGTC	2 cut(s)	41, 649
MnlI	CCTC	7 cut(s)	124, 234, 264, 303, 441, 533, 593
MroNI	GCCGGC	1 cut(s)	426
MroXI	GAANNNNTTC	3 cut(s)	144, 197, 451
MspA1I	CMGCKG	1 cut(s)	95
MspI	CCGG	2 cut(s)	427, 659
MspR9I	CCNGG	2 cut(s)	111, 365
MvaI	CCWGG	2 cut(s)	111, 365
MvnI	CGCG	1 cut(s)	398
MwoI	GCNNNNNNNGC	6 cut(s)	30, 227, 339, 348, 581, 655
NaeI	GCCGGC	1 cut(s)	428
NdeII	GATC	2 cut(s)	249, 526
NgoMIV	GCCGGC	1 cut(s)	426
NlaIII	CATG	3 cut(s)	221, 230, 346
NlaIV	GGNNCC	4 cut(s)	274, 521, 563, 564
NmeAIII	GCCGAG	1 cut(s)	271
NmuCI	GTSAC	1 cut(s)	482
NspI	RCATGY	1 cut(s)	221
PaeI	GCATGC	1 cut(s)	221
PdiI	GCCGGC	1 cut(s)	428
PdmI	GAANNNNTTC	3 cut(s)	144, 197, 451
PfeI	GAWTC	4 cut(s)	140, 212, 301, 408
PkrI	GCNGC	2 cut(s)	9, 97
PleI	GAGTC	2 cut(s)	41, 648
PpsI	GAGTC	2 cut(s)	41, 648
PpuMI	RGGWCCY	1 cut(s)	272
Psp5II	RGGWCCY	1 cut(s)	272
Psp6I	CCWGG	2 cut(s)	109, 363
PspGI	CCWGG	2 cut(s)	109, 363
PspN4I	GGNNCC	4 cut(s)	274, 521, 563, 564
PspOMI	GGGCCC	1 cut(s)	561
PspPI	GGNCC	5 cut(s)	272, 361, 417, 561, 562
PspPPI	RGGWCCY	1 cut(s)	272
PsuI	RGATCY	1 cut(s)	249
PvuII	CAGCTG	1 cut(s)	95
SatI	GCNGC	2 cut(s)	8, 96
Sau3AI	GATC	2 cut(s)	249, 526
Sau96I	GGNCC	5 cut(s)	272, 361, 417, 561, 562
SchI	GAGTC	2 cut(s)	41, 649
ScrFI	CCNGG	2 cut(s)	111, 365
SduI	GDGCHC	1 cut(s)	565
SexAI	ACCWGGT	1 cut(s)	363
SfaNI	GCATC	2 cut(s)	42, 232
SinI	GGWCC	3 cut(s)	272, 361, 417
SmlI	CTYRAG	1 cut(s)	635
SmoI	CTYRAG	1 cut(s)	635
SphI	GCATGC	1 cut(s)	221
Sse9I	AATT	3 cut(s)	447, 468, 625
SsiI	CCGC	1 cut(s)	137
SspMI	CTAG	1 cut(s)	209
StyD4I	CCNGG	2 cut(s)	109, 363
StyI	CCWWGG	1 cut(s)	177
TaaI	ACNGT	2 cut(s)	283, 653
TaiI	ACGT	2 cut(s)	200, 552
TaqI	TCGA	1 cut(s)	525
TasI	AATT	3 cut(s)	447, 468, 625
TfiI	GAWTC	4 cut(s)	140, 212, 301, 408
TscAI	CASTG	1 cut(s)	288
TseFI	GTSAC	1 cut(s)	482
TseI	GCWGC	2 cut(s)	7, 95
Tsp45I	GTSAC	1 cut(s)	482
TspDTI	ATGAA	2 cut(s)	225, 302
TspGWI	ACGGA	1 cut(s)	256
TspRI	CASTG	1 cut(s)	288
VpaK11BI	GGWCC	3 cut(s)	272, 361, 417
XapI	RAATTY	2 cut(s)	447, 625
XceI	RCATGY	1 cut(s)	221
XmnI	GAANNNNTTC	3 cut(s)	144, 197, 451
XspI	CTAG	1 cut(s)	209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.