Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8066380.1

Orthogroup ID

OG0022584

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 453

Gene Structure 453 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8066380.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ggtaggaccctgaacagtgatgaaagtagtgtggattccgatgaggccaagcagaagtatgatatcttgaaatggctatatgatcagcctctattgtctgtagtgttcttgtgctttggaagcatgggaagctttgacgaggaccaggtgaaagagaacgcccacgcccaagagcacgcgacccatagattcttatggtccttacgccggcctccacccataggaagaattccttcacccataggaagaattacttttccaagtgactacgatgaccacacagaagtcttgcctaaagggttcctcgatcaaacatttgggattggaaacgtcataggctgggccccacaagttgccgtatcggctcacccatttgtgggaggatttgtattccattgtggctggaattccatgcttgagagtctttggcacggtgtgccggttgccccttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008194 GO:0008300 GO:0009056 GO:0009628 GO:0009651 GO:0009687 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016042 GO:0016054 GO:0016107 GO:0016115 GO:0016740 GO:0016757 GO:0016758 GO:0019752 GO:0032787 GO:0033993 GO:0035251 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043290 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046164 GO:0046345 GO:0046395 GO:0046527 GO:0050896 GO:0071704 GO:0072329 GO:0080043 GO:0080044 GO:0080046 GO:0097305 GO:1901575 GO:1901615 GO:1901616 GO:1901700 GO:1902644

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

150

Amino Acids

16.76

Weight (kDa)

5.35

Isoelectric Point (pI)

54.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022584)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0339961
rosa_multiflora	Rmu_co8066380.1_g000001 Rmu_sc0000234.1_g000013
rosa_rugosa	Rorug01G0138200.1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	179
AcsI	RAATTY	2 cut(s)	228, 406
AdeI	CACNNNGTG	1 cut(s)	436
AfiI	CCNNNNNNNGG	4 cut(s)	207, 221, 376, 377
AgsI	TTSAA	1 cut(s)	70
AjnI	CCWGG	1 cut(s)	144
AluBI	AGCT	1 cut(s)	132
AluI	AGCT	1 cut(s)	132
Alw21I	GWGCWC	1 cut(s)	177
AoxI	GGCC	3 cut(s)	45, 209, 342
ApaI	GGGCCC	1 cut(s)	346
ApoI	RAATTY	2 cut(s)	228, 406
Asp700I	GAANNNNTTC	1 cut(s)	232
AspS9I	GGNCC	5 cut(s)	6, 142, 198, 342, 343
AsuHPI	GGTGA	3 cut(s)	160, 228, 359
AvaII	GGWCC	3 cut(s)	6, 142, 198
BaeGI	GKGCMC	1 cut(s)	346
BanII	GRGCYC	1 cut(s)	346
Bbv12I	GWGCWC	1 cut(s)	177
BceAI	ACGGC	1 cut(s)	341
BciT130I	CCWGG	1 cut(s)	146
BclI	TGATCA	1 cut(s)	82
BfmI	CTRYAG	1 cut(s)	99
BglI	GCCNNNNNGGC	1 cut(s)	362
Bme1390I	CCNGG	1 cut(s)	146
Bme18I	GGWCC	3 cut(s)	6, 142, 198
BmgT120I	GGNCC	5 cut(s)	6, 142, 198, 342, 343
BmiI	GGNNCC	4 cut(s)	8, 302, 344, 345
BmrFI	CCNGG	1 cut(s)	146
BpuEI	CTTGAG	1 cut(s)	437
BsaXI	ACNNNNNCTCC	2 cut(s)	372, 402
Bsc4I	CCNNNNNNNGG	4 cut(s)	207, 221, 376, 377
Bse118I	RCCGGY	2 cut(s)	207, 439
BseBI	CCWGG	1 cut(s)	146
BseLI	CCNNNNNNNGG	4 cut(s)	207, 221, 376, 377
BseSI	GKGCMC	1 cut(s)	346
BseYI	CCCAGC	1 cut(s)	339
Bsh1236I	CGCG	1 cut(s)	179
BshFI	GGCC	3 cut(s)	47, 211, 344
BsiHKAI	GWGCWC	1 cut(s)	177
BsiSI	CCGG	2 cut(s)	208, 440
BslI	CCNNNNNNNGG	4 cut(s)	207, 221, 376, 377
BsnI	GGCC	3 cut(s)	47, 211, 344
Bsp120I	GGGCCC	1 cut(s)	342
Bsp1286I	GDGCHC	2 cut(s)	177, 346
Bsp143I	GATC	2 cut(s)	82, 307
BspANI	GGCC	3 cut(s)	47, 211, 344
BspFNI	CGCG	1 cut(s)	179
BspLI	GGNNCC	4 cut(s)	8, 302, 344, 345
BsrFI	RCCGGY	2 cut(s)	207, 439
BssAI	RCCGGY	2 cut(s)	207, 439
BssMI	GATC	2 cut(s)	82, 307
Bst2UI	CCWGG	1 cut(s)	146
Bst4CI	ACNGT	2 cut(s)	17, 434
BstAPI	GCANNNNNTGC	1 cut(s)	436
BstC8I	GCNNGC	2 cut(s)	177, 209
BstFNI	CGCG	1 cut(s)	179
BstKTI	GATC	2 cut(s)	85, 310
BstMBI	GATC	2 cut(s)	82, 307
BstMWI	GCNNNNNNNGC	4 cut(s)	120, 129, 362, 436
BstNI	CCWGG	1 cut(s)	146
BstSCI	CCNGG	1 cut(s)	144
BstSFI	CTRYAG	1 cut(s)	99
BstSLI	GKGCMC	1 cut(s)	346
BstUI	CGCG	1 cut(s)	179
BsuRI	GGCC	3 cut(s)	47, 211, 344
BtsIMutI	CAGTG	1 cut(s)	22
Cac8I	GCNNGC	2 cut(s)	177, 209
Cfr10I	RCCGGY	2 cut(s)	207, 439
Cfr13I	GGNCC	5 cut(s)	6, 142, 198, 342, 343
CsiI	ACCWGGT	1 cut(s)	144
CviAII	CATG	2 cut(s)	124, 412
CviJI	RGCY	9 cut(s)	47, 76, 88, 132, 211, 339, 344, 365, 402
CviKI_1	RGCY	9 cut(s)	47, 76, 88, 132, 211, 339, 344, 365, 402
DpnI	GATC	2 cut(s)	84, 309
DpnII	GATC	2 cut(s)	82, 307
DraIII	CACNNNGTG	1 cut(s)	436
Eco24I	GRGCYC	1 cut(s)	346
Eco32I	GATATC	1 cut(s)	64
Eco47I	GGWCC	3 cut(s)	6, 142, 198
EcoO109I	RGGNCCY	2 cut(s)	6, 343
EcoRI	GAATTC	2 cut(s)	228, 406
EcoRII	CCWGG	1 cut(s)	144
EcoRV	GATATC	1 cut(s)	64
EcoT38I	GRGCYC	1 cut(s)	346
FaeI	CATG	2 cut(s)	127, 415
FalI	AAGNNNNNCTT	4 cut(s)	217, 249, 238, 270
FatI	CATG	2 cut(s)	123, 411
FbaI	TGATCA	1 cut(s)	82
FriOI	GRGCYC	1 cut(s)	346
GsaI	CCCAGC	1 cut(s)	343
HaeIII	GGCC	3 cut(s)	47, 211, 344
HapII	CCGG	2 cut(s)	208, 440
Hin1II	CATG	2 cut(s)	127, 415
HindIII	AAGCTT	1 cut(s)	130
HinfI	GANTC	3 cut(s)	35, 189, 421
HpaII	CCGG	2 cut(s)	208, 440
HphI	GGTGA	3 cut(s)	160, 228, 359
Hpy188I	TCNGA	1 cut(s)	40
Hpy188III	TCNNGA	1 cut(s)	67
HpyAV	CCTTC	1 cut(s)	243
HpyCH4III	ACNGT	2 cut(s)	17, 434
HpyCH4IV	ACGT	1 cut(s)	330
HpyF10VI	GCNNNNNNNGC	4 cut(s)	120, 129, 362, 436
HpySE526I	ACGT	1 cut(s)	330
Hsp92II	CATG	2 cut(s)	127, 415
KroI	GCCGGC	1 cut(s)	207
KroNI	GCCGGC	1 cut(s)	209
Ksp22I	TGATCA	1 cut(s)	82
Kzo9I	GATC	2 cut(s)	82, 307
LpnPI	CCDG	6 cut(s)	23, 131, 158, 221, 325, 388
MabI	ACCWGGT	1 cut(s)	144
MaeII	ACGT	1 cut(s)	330
MaeIII	GTNAC	1 cut(s)	263
MalI	GATC	2 cut(s)	84, 309
MboI	GATC	2 cut(s)	82, 307
MboII	GAAGA	2 cut(s)	237, 258
MhlI	GDGCHC	2 cut(s)	177, 346
MluCI	AATT	3 cut(s)	228, 249, 406
MlyI	GAGTC	1 cut(s)	430
MnlI	CCTC	6 cut(s)	37, 99, 133, 222, 314, 374
MroNI	GCCGGC	1 cut(s)	207
MroXI	GAANNNNTTC	1 cut(s)	232
MspI	CCGG	2 cut(s)	208, 440
MspR9I	CCNGG	1 cut(s)	146
MvaI	CCWGG	1 cut(s)	146
MvnI	CGCG	1 cut(s)	179
MwoI	GCNNNNNNNGC	4 cut(s)	120, 129, 362, 436
NaeI	GCCGGC	1 cut(s)	209
NdeII	GATC	2 cut(s)	82, 307
NgoMIV	GCCGGC	1 cut(s)	207
NlaIII	CATG	2 cut(s)	127, 415
NlaIV	GGNNCC	4 cut(s)	8, 302, 344, 345
NmuCI	GTSAC	1 cut(s)	263
PdiI	GCCGGC	1 cut(s)	209
PdmI	GAANNNNTTC	1 cut(s)	232
PfeI	GAWTC	2 cut(s)	35, 189
PleI	GAGTC	1 cut(s)	429
PpsI	GAGTC	1 cut(s)	429
PpuMI	RGGWCCY	1 cut(s)	6
Psp5II	RGGWCCY	1 cut(s)	6
Psp6I	CCWGG	1 cut(s)	144
PspFI	CCCAGC	1 cut(s)	339
PspGI	CCWGG	1 cut(s)	144
PspN4I	GGNNCC	4 cut(s)	8, 302, 344, 345
PspOMI	GGGCCC	1 cut(s)	342
PspPI	GGNCC	5 cut(s)	6, 142, 198, 342, 343
PspPPI	RGGWCCY	1 cut(s)	6
Sau3AI	GATC	2 cut(s)	82, 307
Sau96I	GGNCC	5 cut(s)	6, 142, 198, 342, 343
SchI	GAGTC	1 cut(s)	430
ScrFI	CCNGG	1 cut(s)	146
SduI	GDGCHC	2 cut(s)	177, 346
SetI	ASST	3 cut(s)	134, 150, 333
SexAI	ACCWGGT	1 cut(s)	144
SfcI	CTRYAG	1 cut(s)	99
SinI	GGWCC	3 cut(s)	6, 142, 198
SmlI	CTYRAG	1 cut(s)	416
SmoI	CTYRAG	1 cut(s)	416
Sse9I	AATT	3 cut(s)	228, 249, 406
StyD4I	CCNGG	1 cut(s)	144
TaaI	ACNGT	2 cut(s)	17, 434
TaiI	ACGT	1 cut(s)	333
TaqI	TCGA	1 cut(s)	306
TasI	AATT	3 cut(s)	228, 249, 406
TfiI	GAWTC	2 cut(s)	35, 189
TscAI	CASTG	1 cut(s)	22
TseFI	GTSAC	1 cut(s)	263
Tsp45I	GTSAC	1 cut(s)	263
TspDTI	ATGAA	1 cut(s)	36
TspRI	CASTG	1 cut(s)	22
VpaK11BI	GGWCC	3 cut(s)	6, 142, 198
XapI	RAATTY	2 cut(s)	228, 406
XmnI	GAANNNNTTC	1 cut(s)	232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.