Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000234.1

Orthogroup ID

OG0022584

Physical Location & Seq

Genomic Coordinates Forward (+)

61128 .. 61598

Gene Structure 471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000234.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

atgcatatctgtatatatggtaggaccctgaacagtgatgaaagtagtgtggattccgatgaggccaagcagaagtatgatatcttgaaatggctatatgatcagcctctattgtctgtagtgttcttgtgctttggaagcatgggaagctttgacgaggaccaggtgaaagagaacgcccacgcccaagagcacgcgacccatagattcttatggtccttacgccggcctccacccataggaagaattccttcacccataggaagaattacttttccaagtgactacgatgaccacacagaagtcttgcctaaagggttcctcgatcaaacatttgggattggaaacgtcataggctgggccccacaagttgccgtatcggctcacccatttgtgggaggatttgtattccattgtggctggaattccatgcttgagagtctttggcacggtgtgccggttgccccttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008194 GO:0008300 GO:0009056 GO:0009628 GO:0009651 GO:0009687 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016042 GO:0016054 GO:0016107 GO:0016115 GO:0016740 GO:0016757 GO:0016758 GO:0019752 GO:0032787 GO:0033993 GO:0035251 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043290 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046164 GO:0046345 GO:0046395 GO:0046527 GO:0050896 GO:0071704 GO:0072329 GO:0080043 GO:0080044 GO:0080046 GO:0097305 GO:1901575 GO:1901615 GO:1901616 GO:1901700 GO:1902644

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

156

Amino Acids

17.53

Weight (kDa)

5.49

Isoelectric Point (pI)

58.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022584)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0339961
rosa_multiflora	Rmu_co8066380.1_g000001 Rmu_sc0000234.1_g000013
rosa_rugosa	Rorug01G0138200.1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	197
AcsI	RAATTY	2 cut(s)	246, 424
AdeI	CACNNNGTG	1 cut(s)	454
AfiI	CCNNNNNNNGG	4 cut(s)	225, 239, 394, 395
AgsI	TTSAA	1 cut(s)	88
AjnI	CCWGG	1 cut(s)	162
AluBI	AGCT	1 cut(s)	150
AluI	AGCT	1 cut(s)	150
Alw21I	GWGCWC	1 cut(s)	195
AoxI	GGCC	3 cut(s)	63, 227, 360
ApaI	GGGCCC	1 cut(s)	364
ApoI	RAATTY	2 cut(s)	246, 424
Asp700I	GAANNNNTTC	1 cut(s)	250
AspS9I	GGNCC	5 cut(s)	24, 160, 216, 360, 361
AsuHPI	GGTGA	3 cut(s)	178, 246, 377
AvaII	GGWCC	3 cut(s)	24, 160, 216
BaeGI	GKGCMC	1 cut(s)	364
BanII	GRGCYC	1 cut(s)	364
Bbv12I	GWGCWC	1 cut(s)	195
BceAI	ACGGC	1 cut(s)	359
BciT130I	CCWGG	1 cut(s)	164
BclI	TGATCA	1 cut(s)	100
BfmI	CTRYAG	1 cut(s)	117
BglI	GCCNNNNNGGC	1 cut(s)	380
Bme1390I	CCNGG	1 cut(s)	164
Bme18I	GGWCC	3 cut(s)	24, 160, 216
BmgT120I	GGNCC	5 cut(s)	24, 160, 216, 360, 361
BmiI	GGNNCC	4 cut(s)	26, 320, 362, 363
BmrFI	CCNGG	1 cut(s)	164
BpuEI	CTTGAG	1 cut(s)	455
BsaXI	ACNNNNNCTCC	2 cut(s)	390, 420
Bsc4I	CCNNNNNNNGG	4 cut(s)	225, 239, 394, 395
Bse118I	RCCGGY	2 cut(s)	225, 457
BseBI	CCWGG	1 cut(s)	164
BseLI	CCNNNNNNNGG	4 cut(s)	225, 239, 394, 395
BseSI	GKGCMC	1 cut(s)	364
BseYI	CCCAGC	1 cut(s)	357
Bsh1236I	CGCG	1 cut(s)	197
BshFI	GGCC	3 cut(s)	65, 229, 362
BsiHKAI	GWGCWC	1 cut(s)	195
BsiSI	CCGG	2 cut(s)	226, 458
BslI	CCNNNNNNNGG	4 cut(s)	225, 239, 394, 395
BsnI	GGCC	3 cut(s)	65, 229, 362
Bsp120I	GGGCCC	1 cut(s)	360
Bsp1286I	GDGCHC	2 cut(s)	195, 364
Bsp143I	GATC	2 cut(s)	100, 325
BspANI	GGCC	3 cut(s)	65, 229, 362
BspFNI	CGCG	1 cut(s)	197
BspLI	GGNNCC	4 cut(s)	26, 320, 362, 363
BsrFI	RCCGGY	2 cut(s)	225, 457
BssAI	RCCGGY	2 cut(s)	225, 457
BssMI	GATC	2 cut(s)	100, 325
Bst2UI	CCWGG	1 cut(s)	164
Bst4CI	ACNGT	2 cut(s)	35, 452
BstAPI	GCANNNNNTGC	1 cut(s)	454
BstC8I	GCNNGC	2 cut(s)	195, 227
BstFNI	CGCG	1 cut(s)	197
BstKTI	GATC	2 cut(s)	103, 328
BstMBI	GATC	2 cut(s)	100, 325
BstMWI	GCNNNNNNNGC	4 cut(s)	138, 147, 380, 454
BstNI	CCWGG	1 cut(s)	164
BstSCI	CCNGG	1 cut(s)	162
BstSFI	CTRYAG	1 cut(s)	117
BstSLI	GKGCMC	1 cut(s)	364
BstUI	CGCG	1 cut(s)	197
BsuRI	GGCC	3 cut(s)	65, 229, 362
BtsIMutI	CAGTG	1 cut(s)	40
Cac8I	GCNNGC	2 cut(s)	195, 227
Cfr10I	RCCGGY	2 cut(s)	225, 457
Cfr13I	GGNCC	5 cut(s)	24, 160, 216, 360, 361
CsiI	ACCWGGT	1 cut(s)	162
CviAII	CATG	2 cut(s)	142, 430
CviJI	RGCY	9 cut(s)	65, 94, 106, 150, 229, 357, 362, 383, 420
CviKI_1	RGCY	9 cut(s)	65, 94, 106, 150, 229, 357, 362, 383, 420
DpnI	GATC	2 cut(s)	102, 327
DpnII	GATC	2 cut(s)	100, 325
DraIII	CACNNNGTG	1 cut(s)	454
Eco24I	GRGCYC	1 cut(s)	364
Eco32I	GATATC	1 cut(s)	82
Eco47I	GGWCC	3 cut(s)	24, 160, 216
EcoO109I	RGGNCCY	2 cut(s)	24, 361
EcoRI	GAATTC	2 cut(s)	246, 424
EcoRII	CCWGG	1 cut(s)	162
EcoRV	GATATC	1 cut(s)	82
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	364
FaeI	CATG	2 cut(s)	145, 433
FalI	AAGNNNNNCTT	4 cut(s)	235, 267, 256, 288
FatI	CATG	2 cut(s)	141, 429
FbaI	TGATCA	1 cut(s)	100
FriOI	GRGCYC	1 cut(s)	364
GsaI	CCCAGC	1 cut(s)	361
HaeIII	GGCC	3 cut(s)	65, 229, 362
HapII	CCGG	2 cut(s)	226, 458
Hin1II	CATG	2 cut(s)	145, 433
HindIII	AAGCTT	1 cut(s)	148
HinfI	GANTC	3 cut(s)	53, 207, 439
HpaII	CCGG	2 cut(s)	226, 458
HphI	GGTGA	3 cut(s)	178, 246, 377
Hpy188I	TCNGA	1 cut(s)	58
Hpy188III	TCNNGA	1 cut(s)	85
HpyAV	CCTTC	1 cut(s)	261
HpyCH4III	ACNGT	2 cut(s)	35, 452
HpyCH4IV	ACGT	1 cut(s)	348
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	4 cut(s)	138, 147, 380, 454
HpySE526I	ACGT	1 cut(s)	348
Hsp92II	CATG	2 cut(s)	145, 433
KroI	GCCGGC	1 cut(s)	225
KroNI	GCCGGC	1 cut(s)	227
Ksp22I	TGATCA	1 cut(s)	100
Kzo9I	GATC	2 cut(s)	100, 325
LpnPI	CCDG	6 cut(s)	41, 149, 176, 239, 343, 406
MabI	ACCWGGT	1 cut(s)	162
MaeII	ACGT	1 cut(s)	348
MaeIII	GTNAC	1 cut(s)	281
MalI	GATC	2 cut(s)	102, 327
MboI	GATC	2 cut(s)	100, 325
MboII	GAAGA	2 cut(s)	255, 276
MhlI	GDGCHC	2 cut(s)	195, 364
MluCI	AATT	3 cut(s)	246, 267, 424
MlyI	GAGTC	1 cut(s)	448
MnlI	CCTC	6 cut(s)	55, 117, 151, 240, 332, 392
Mph1103I	ATGCAT	1 cut(s)	6
MroNI	GCCGGC	1 cut(s)	225
MroXI	GAANNNNTTC	1 cut(s)	250
MspI	CCGG	2 cut(s)	226, 458
MspR9I	CCNGG	1 cut(s)	164
MvaI	CCWGG	1 cut(s)	164
MvnI	CGCG	1 cut(s)	197
MwoI	GCNNNNNNNGC	4 cut(s)	138, 147, 380, 454
NaeI	GCCGGC	1 cut(s)	227
NdeII	GATC	2 cut(s)	100, 325
NgoMIV	GCCGGC	1 cut(s)	225
NlaIII	CATG	2 cut(s)	145, 433
NlaIV	GGNNCC	4 cut(s)	26, 320, 362, 363
NmuCI	GTSAC	1 cut(s)	281
NsiI	ATGCAT	1 cut(s)	6
PdiI	GCCGGC	1 cut(s)	227
PdmI	GAANNNNTTC	1 cut(s)	250
PfeI	GAWTC	2 cut(s)	53, 207
PleI	GAGTC	1 cut(s)	447
PpsI	GAGTC	1 cut(s)	447
PpuMI	RGGWCCY	1 cut(s)	24
Psp5II	RGGWCCY	1 cut(s)	24
Psp6I	CCWGG	1 cut(s)	162
PspFI	CCCAGC	1 cut(s)	357
PspGI	CCWGG	1 cut(s)	162
PspN4I	GGNNCC	4 cut(s)	26, 320, 362, 363
PspOMI	GGGCCC	1 cut(s)	360
PspPI	GGNCC	5 cut(s)	24, 160, 216, 360, 361
PspPPI	RGGWCCY	1 cut(s)	24
Sau3AI	GATC	2 cut(s)	100, 325
Sau96I	GGNCC	5 cut(s)	24, 160, 216, 360, 361
SchI	GAGTC	1 cut(s)	448
ScrFI	CCNGG	1 cut(s)	164
SduI	GDGCHC	2 cut(s)	195, 364
SetI	ASST	3 cut(s)	152, 168, 351
SexAI	ACCWGGT	1 cut(s)	162
SfcI	CTRYAG	1 cut(s)	117
SinI	GGWCC	3 cut(s)	24, 160, 216
SmlI	CTYRAG	1 cut(s)	434
SmoI	CTYRAG	1 cut(s)	434
Sse9I	AATT	3 cut(s)	246, 267, 424
StyD4I	CCNGG	1 cut(s)	162
TaaI	ACNGT	2 cut(s)	35, 452
TaiI	ACGT	1 cut(s)	351
TaqI	TCGA	1 cut(s)	324
TasI	AATT	3 cut(s)	246, 267, 424
TfiI	GAWTC	2 cut(s)	53, 207
TscAI	CASTG	1 cut(s)	40
TseFI	GTSAC	1 cut(s)	281
Tsp45I	GTSAC	1 cut(s)	281
TspDTI	ATGAA	1 cut(s)	54
TspRI	CASTG	1 cut(s)	40
VpaK11BI	GGWCC	3 cut(s)	24, 160, 216
XapI	RAATTY	2 cut(s)	246, 424
XmnI	GAANNNNTTC	1 cut(s)	250
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.